| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027246
Identifier: 238027246
GI number: 238027246
Start: 1792650
End: 1793468
Strand: Direct
Name: 238027246
Synonym: bglu_1g16330
Alternate gene names: NA
Gene position: 1792650-1793468 (Clockwise)
Preceding gene: 238027245
Following gene: 238027247
Centisome position: 45.89
GC content: 48.35
Gene sequence:
>819_bases ATGTCCTTTACTTTCATGAAGAAACTAGCACAGATTTTACTCCTTCTAGTGTCTGCGGTCTTTATGCCGGTGTATGCTTC GGCCCAGGAAACATATCGAATGACAGGTGCAGCACAGTTCGAACAGGGCCATGATACTCACAAGTTGCCCTTTCCGGTCA ACCCACAGACCGCAGCCTTTCTCACTTTCGATGACAGTGCGTTTTCATTTCATTACGCCGGGCATAGTTGCAACGTAAAG ATCGGCAAGAAAATGAAATTCTATGTCGACCCGGTCATCTCTCATTCGTTCGGTTCCAGGGATAAATTCAATGCTTTTCT GAGCACGAAATTCCATGCGAAAGGCGCGGCGCTGACTGACACCTATATCCTGGGTGATGTAGACGCGCCGCTATGCTCGG GCTTTCGGTCAGCGATGATCTATCGATCGCCGGACGAGATGGTGCTGCTCGACGGTTCGTGGGCGTACGCCTTCGAGCGT CAGAGCCATGCGCCGATAAACGCGGAGCAAAGTTTCGACTGCAATAAAGCGGCAACGAATGTCGAGCACCTTATATGCAA GAATCCGGATCTGATTAAGCTTGATGCAACCGTCAATCGTGGCTACGTAGCGATGATGCTGACCAATTCGAAAGAAATTT CATACCAAGATCCAGTGAGACTGAATCAAATCAATTGGATCAAGACAGTGCGGAATTCCTGCGGCGATAATGCTTGCTTG ATGAAAGCATATAACGATCGCATAGCTTACATAAAAGGCAGGATAGCAAGCACCTACCCGTCTTATCCAGAAGAAGACTC CAATCAAGAAGGCGATTGA
Upstream 100 bases:
>100_bases GCGCCCGTCGAATTCTTGGATATCGAGAACAAGACACGCCGTGAACGAGAGCACGACATGTTTTGTCTAGGTACTTACAA TTCCAATCATTGAACGAAGG
Downstream 100 bases:
>100_bases TGTACGCGTGCGTCTATCCAGGCAACACGCGTAAATTTGTTCTCAATTTTGTCGAGGGGTAAGATGGCACTACCTATCAT CGTGGTCGGAGATACGACAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MSFTFMKKLAQILLLLVSAVFMPVYASAQETYRMTGAAQFEQGHDTHKLPFPVNPQTAAFLTFDDSAFSFHYAGHSCNVK IGKKMKFYVDPVISHSFGSRDKFNAFLSTKFHAKGAALTDTYILGDVDAPLCSGFRSAMIYRSPDEMVLLDGSWAYAFER QSHAPINAEQSFDCNKAATNVEHLICKNPDLIKLDATVNRGYVAMMLTNSKEISYQDPVRLNQINWIKTVRNSCGDNACL MKAYNDRIAYIKGRIASTYPSYPEEDSNQEGD
Sequences:
>Translated_272_residues MSFTFMKKLAQILLLLVSAVFMPVYASAQETYRMTGAAQFEQGHDTHKLPFPVNPQTAAFLTFDDSAFSFHYAGHSCNVK IGKKMKFYVDPVISHSFGSRDKFNAFLSTKFHAKGAALTDTYILGDVDAPLCSGFRSAMIYRSPDEMVLLDGSWAYAFER QSHAPINAEQSFDCNKAATNVEHLICKNPDLIKLDATVNRGYVAMMLTNSKEISYQDPVRLNQINWIKTVRNSCGDNACL MKAYNDRIAYIKGRIASTYPSYPEEDSNQEGD >Mature_271_residues SFTFMKKLAQILLLLVSAVFMPVYASAQETYRMTGAAQFEQGHDTHKLPFPVNPQTAAFLTFDDSAFSFHYAGHSCNVKI GKKMKFYVDPVISHSFGSRDKFNAFLSTKFHAKGAALTDTYILGDVDAPLCSGFRSAMIYRSPDEMVLLDGSWAYAFERQ SHAPINAEQSFDCNKAATNVEHLICKNPDLIKLDATVNRGYVAMMLTNSKEISYQDPVRLNQINWIKTVRNSCGDNACLM KAYNDRIAYIKGRIASTYPSYPEEDSNQEGD
Specific function: Unknown
COG id: COG4461
COG function: function code S; Uncharacterized protein conserved in bacteria, putative lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30489; Mature: 30358
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFTFMKKLAQILLLLVSAVFMPVYASAQETYRMTGAAQFEQGHDTHKLPFPVNPQTAAF CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCEEE LTFDDSAFSFHYAGHSCNVKIGKKMKFYVDPVISHSFGSRDKFNAFLSTKFHAKGAALTD EEECCCCEEEEECCCEEEEEECCEEEEEECHHHHCCCCCCCHHHHEEEEEEECCCCEEEE TYILGDVDAPLCSGFRSAMIYRSPDEMVLLDGSWAYAFERQSHAPINAEQSFDCNKAATN EEEEECCCCHHHHHHHHCEEEECCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCHHHCC VEHLICKNPDLIKLDATVNRGYVAMMLTNSKEISYQDPVRLNQINWIKTVRNSCGDNACL HHHEEECCCCEEEEEEEECCCEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHCCCCEEE MKAYNDRIAYIKGRIASTYPSYPEEDSNQEGD EEECCCEEEEEECEEECCCCCCCCCCCCCCCC >Mature Secondary Structure SFTFMKKLAQILLLLVSAVFMPVYASAQETYRMTGAAQFEQGHDTHKLPFPVNPQTAAF CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCEEE LTFDDSAFSFHYAGHSCNVKIGKKMKFYVDPVISHSFGSRDKFNAFLSTKFHAKGAALTD EEECCCCEEEEECCCEEEEEECCEEEEEECHHHHCCCCCCCHHHHEEEEEEECCCCEEEE TYILGDVDAPLCSGFRSAMIYRSPDEMVLLDGSWAYAFERQSHAPINAEQSFDCNKAATN EEEEECCCCHHHHHHHHCEEEECCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCHHHCC VEHLICKNPDLIKLDATVNRGYVAMMLTNSKEISYQDPVRLNQINWIKTVRNSCGDNACL HHHEEECCCCEEEEEEEECCCEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHCCCCEEE MKAYNDRIAYIKGRIASTYPSYPEEDSNQEGD EEECCCEEEEEECEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA