| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027244
Identifier: 238027244
GI number: 238027244
Start: 1788134
End: 1790899
Strand: Direct
Name: 238027244
Synonym: bglu_1g16310
Alternate gene names: NA
Gene position: 1788134-1790899 (Clockwise)
Preceding gene: 238027242
Following gene: 238027245
Centisome position: 45.77
GC content: 55.93
Gene sequence:
>2766_bases ATGAACATGACCGAAGTGGCTCAGGCGATTCGTGGCGGCCTGATTCAGCAAGATCGCCTGCTCAAGGCGAGCATCCCATC GCTGCCGGAGAATGCGCTTGTCCCGCGTCGGGCGGTGACTTATTCCGAGCTTGGCCGTGACTTCAGTGTCAAGCTCGACA TGGTGTCCACAGCGGGCGATATTGAGCTTAAAACATTGATCGCTCAACCGATGACCCTTTGGTTGCAGCAAGCGAACAAG TCCTATTTACCGATCAACGGATACATCCATACAGCTCGTAGGCTTGGTTCTGACGGAAGCCTTTCAAGTTACCAATTGGC TTTCGCTTCGTGGATGCATTTCTTAAAGTTCCGCAGCGATATGCGGTACTGGCAGAACCAGAGTGTTGACGCCATCCTCA GCGATGTATTTAATGCGCATCCACAAGCGCGGGGGCAATTCGAATTCGCCTTGCTGAAGCCGTTACCCTCGCGCTCGTAT TGCCGTCAGAGTGAGACTGATTGGAATTTCGTTCATCGATTGATGGAAGAAGAAGGCTTGTTCGGTTTTTGGCGTCAGGA CAATGAAGGCAAGTCGCACAAACTCGTCGTGACCGATAACATTTACTCGCTTGACGAACTATCTCCCAATCCGGTCGAAT TTTCCAGATCAGGCGCCCGTAGCGAAACGGATGCATTTACGCAATGGGCAGGCTCGCGGACATTGCAGAGTACCGTACAT ACGACGCGTACCTTTGACTACAAGGCACCATCGCCCATTACCAACCCCAGAGGTACGACGCTGCCAACGATGGCCGGTCA AGGGAATTTGCCGGAACAGACGGAAGTCTACGAATATACCGGCGCCTACACGTATCTGAGCCGGGATCGCGGTGAACATC TCTCGAAGATTCATCTAGAGGAATGGGAATCGAGGGCGAAGAGATTTCTTGGCGTGGGAGGTGTTCGGGCCATTGATGCC GGCCGCCGCTTCGTACTGACTGGGCATCCTGAGCACGATCGTGATCCGGCCGGGCACCGAGAATTCGCATCGATAAAAGT GCGTCGGTACGTCGAAAACAATCTGCCGCTATCGAGTCACGAAGCGAGCTTCCCATATAGCTTGCAGAGCGAAGTAGCAC AGGCAAAGTTTGAGCAATCGGGTGAGATCGTCACTCATGAAGATGGCTCGGCCGGTTTTTATCTGGTCGAAGTCGAGGCA CAGCGTGTCACTGTTCCGTATCGGAGTCCGTTCGAACACAAGAAGCCGACGATGGAGTTGGAGACGGCGATTGTCGTGGG GCCGCAGGGTGAAGAGGTGTATACGGACGCATTGAACCGCGTCAAGATCATGTTCGTATGGGACCGCCAAAGTTCGGGGG ACGCGAATGCCTCGTGCTGGGTGAGAGTTGCGCAGTCGGATACAGGCGGGGGGTACGGAAGCGTACACGTTCCGAGGATC GGAGAAGAAGTACTGGTTGGTTATGTCGGGGGAGACTGTGACAGGCCCATCGTGCTACATCGCGTTTACAACGGACGCGT TCAGCCGCAATGGCATAGTAATGGCATCCTGTCGGGCTATCGATCGAAAGAGTATGCCGGTGCTGGCTACAACGAGATGG TCCTGGACGACGCTACTGCGCAGAATCGTGTTCGACTGTTCAGCAGCAGTTCGAACACGCTTCTTCATCTCGGCTATCTC ATCGATCAGGACGGTAACACCCGTGGCCCCTATCTCGGCAGCGGTTTCGATTTGAAATCGGATGCTCACGGGGCAATTCG TGCGGCGCAGGGGCTTTTCGTCTCAAGCTACGACGCATCGGTCAAACAGCCCATGGATGCGCGTCACGCGACTGGCCAAC TCGCTAACGCGCAAAGCGTTGTCCAGTCGCTTTCTGACGCAAGTGCAGGGCATCGCGCTGAGAGTCTCAGCGCAGGTTAT GATGCGTTGCGTGCATTTACCGACGCGACGCAGGCAAGCGTCGCTGGCATTTCTACCGGAGGTCGCACCGCCGGTGGCGG TGCCGGGAGTGCGAACGGTTTCAAGGCCCCGATCATGTTGTTTGCAAGCCCGGCCGGTATCGCGACATCAACGCAGCAGT CGACACAGATCACGGCTGACCAGCACGTAAATATCGTCAGCGGTGAAAGTACGCATCTGGCTGCTGGGAAATCGTTGGTC GCGAGCGTGGCCGAAAAAGTCAGCTTGTTCGTCAAGAATGCGGGGATGAAGCTATTCGCAGCAAAGGGCAAGGTCGAAAT CCAGGCGCAGTCGGATAATGTCGAAATAATCGCCGATCAGGTTCTGAAACTGATCAGCGCAAAGCGTCGGATCGAGATCA CCGCCGCCGAGGAAATACTGCTCAACGCGCGCGGTAGTTATATCCGGATCAACGGTGCAGGAATCGAGCATGGTACGCCC GCGCAATGGATCGCCTATGCGGGCAACCATGCGCTGCCGGGTCCCAAGTCGCTACCTGTCGTCGTACCCGGCTTTGACAT GCCGAAAGCGTTCAGCAATCGACTCGACGTCTATGATGTCTACTGGCAAAGAGAGTTCGGCGAGGTCGAATATACGGCGC GACGAGAGAATGGTGAGGTGATGGCTCAGGGTACTCTCGATGAGCATGGCCGCACGCCACGCCTGACGACCGACCAACCC GAGACCCTTCAGGTGCTCGTCGGCACGCAAGGGTCGTGGCTAGTCGAATCGGTAGCCTCATCGTCCAGCGATTCCGGCGA AGCCACTCCAGACGACCCGGACCATTACGTTAATCACAGCGCCTGA
Upstream 100 bases:
>100_bases CGACCTGTCAACGGCGCTAAAATTGCGGCGATATACGGGGACGCCGTTCCCGCGAGAGCGTAGGCCGTTGAGCCTGCAAA AACAAGAAGATGGATAACGC
Downstream 100 bases:
>100_bases ACGCCGTTCGAGCCAATCCAAAAAATCATGACCGCTCCGAATACCAACACTGATCCTCTGTCCGCCGTAACGGTTTATTT CAAGGATCATTTTGGCCGAC
Product: Rhs element Vgr protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Vgr-Related Protein; Rhs Element Vgr Family Protein; Rhs-Family Protein; Rhs Element Vgr Family; VGR-Like Protein; VgrG Protein; VGR-Related Type VI Secretion System Protein; Vgr Related Protein; Rhs Element Vgr Related Protein; Replication/Virulence Associated Protein; Two Component LuxR Family Transcriptional Regulator; Conserved Hypothethical Protein; Rhs Element Vgr ProteinGp5-Like; Type VI Secretion System VgrG Family Protein; Rhs Family Protein; Rhs Element Vgr-Related Protein; VgrG Family T6SS G
Number of amino acids: Translated: 921; Mature: 921
Protein sequence:
>921_residues MNMTEVAQAIRGGLIQQDRLLKASIPSLPENALVPRRAVTYSELGRDFSVKLDMVSTAGDIELKTLIAQPMTLWLQQANK SYLPINGYIHTARRLGSDGSLSSYQLAFASWMHFLKFRSDMRYWQNQSVDAILSDVFNAHPQARGQFEFALLKPLPSRSY CRQSETDWNFVHRLMEEEGLFGFWRQDNEGKSHKLVVTDNIYSLDELSPNPVEFSRSGARSETDAFTQWAGSRTLQSTVH TTRTFDYKAPSPITNPRGTTLPTMAGQGNLPEQTEVYEYTGAYTYLSRDRGEHLSKIHLEEWESRAKRFLGVGGVRAIDA GRRFVLTGHPEHDRDPAGHREFASIKVRRYVENNLPLSSHEASFPYSLQSEVAQAKFEQSGEIVTHEDGSAGFYLVEVEA QRVTVPYRSPFEHKKPTMELETAIVVGPQGEEVYTDALNRVKIMFVWDRQSSGDANASCWVRVAQSDTGGGYGSVHVPRI GEEVLVGYVGGDCDRPIVLHRVYNGRVQPQWHSNGILSGYRSKEYAGAGYNEMVLDDATAQNRVRLFSSSSNTLLHLGYL IDQDGNTRGPYLGSGFDLKSDAHGAIRAAQGLFVSSYDASVKQPMDARHATGQLANAQSVVQSLSDASAGHRAESLSAGY DALRAFTDATQASVAGISTGGRTAGGGAGSANGFKAPIMLFASPAGIATSTQQSTQITADQHVNIVSGESTHLAAGKSLV ASVAEKVSLFVKNAGMKLFAAKGKVEIQAQSDNVEIIADQVLKLISAKRRIEITAAEEILLNARGSYIRINGAGIEHGTP AQWIAYAGNHALPGPKSLPVVVPGFDMPKAFSNRLDVYDVYWQREFGEVEYTARRENGEVMAQGTLDEHGRTPRLTTDQP ETLQVLVGTQGSWLVESVASSSSDSGEATPDDPDHYVNHSA
Sequences:
>Translated_921_residues MNMTEVAQAIRGGLIQQDRLLKASIPSLPENALVPRRAVTYSELGRDFSVKLDMVSTAGDIELKTLIAQPMTLWLQQANK SYLPINGYIHTARRLGSDGSLSSYQLAFASWMHFLKFRSDMRYWQNQSVDAILSDVFNAHPQARGQFEFALLKPLPSRSY CRQSETDWNFVHRLMEEEGLFGFWRQDNEGKSHKLVVTDNIYSLDELSPNPVEFSRSGARSETDAFTQWAGSRTLQSTVH TTRTFDYKAPSPITNPRGTTLPTMAGQGNLPEQTEVYEYTGAYTYLSRDRGEHLSKIHLEEWESRAKRFLGVGGVRAIDA GRRFVLTGHPEHDRDPAGHREFASIKVRRYVENNLPLSSHEASFPYSLQSEVAQAKFEQSGEIVTHEDGSAGFYLVEVEA QRVTVPYRSPFEHKKPTMELETAIVVGPQGEEVYTDALNRVKIMFVWDRQSSGDANASCWVRVAQSDTGGGYGSVHVPRI GEEVLVGYVGGDCDRPIVLHRVYNGRVQPQWHSNGILSGYRSKEYAGAGYNEMVLDDATAQNRVRLFSSSSNTLLHLGYL IDQDGNTRGPYLGSGFDLKSDAHGAIRAAQGLFVSSYDASVKQPMDARHATGQLANAQSVVQSLSDASAGHRAESLSAGY DALRAFTDATQASVAGISTGGRTAGGGAGSANGFKAPIMLFASPAGIATSTQQSTQITADQHVNIVSGESTHLAAGKSLV ASVAEKVSLFVKNAGMKLFAAKGKVEIQAQSDNVEIIADQVLKLISAKRRIEITAAEEILLNARGSYIRINGAGIEHGTP AQWIAYAGNHALPGPKSLPVVVPGFDMPKAFSNRLDVYDVYWQREFGEVEYTARRENGEVMAQGTLDEHGRTPRLTTDQP ETLQVLVGTQGSWLVESVASSSSDSGEATPDDPDHYVNHSA >Mature_921_residues MNMTEVAQAIRGGLIQQDRLLKASIPSLPENALVPRRAVTYSELGRDFSVKLDMVSTAGDIELKTLIAQPMTLWLQQANK SYLPINGYIHTARRLGSDGSLSSYQLAFASWMHFLKFRSDMRYWQNQSVDAILSDVFNAHPQARGQFEFALLKPLPSRSY CRQSETDWNFVHRLMEEEGLFGFWRQDNEGKSHKLVVTDNIYSLDELSPNPVEFSRSGARSETDAFTQWAGSRTLQSTVH TTRTFDYKAPSPITNPRGTTLPTMAGQGNLPEQTEVYEYTGAYTYLSRDRGEHLSKIHLEEWESRAKRFLGVGGVRAIDA GRRFVLTGHPEHDRDPAGHREFASIKVRRYVENNLPLSSHEASFPYSLQSEVAQAKFEQSGEIVTHEDGSAGFYLVEVEA QRVTVPYRSPFEHKKPTMELETAIVVGPQGEEVYTDALNRVKIMFVWDRQSSGDANASCWVRVAQSDTGGGYGSVHVPRI GEEVLVGYVGGDCDRPIVLHRVYNGRVQPQWHSNGILSGYRSKEYAGAGYNEMVLDDATAQNRVRLFSSSSNTLLHLGYL IDQDGNTRGPYLGSGFDLKSDAHGAIRAAQGLFVSSYDASVKQPMDARHATGQLANAQSVVQSLSDASAGHRAESLSAGY DALRAFTDATQASVAGISTGGRTAGGGAGSANGFKAPIMLFASPAGIATSTQQSTQITADQHVNIVSGESTHLAAGKSLV ASVAEKVSLFVKNAGMKLFAAKGKVEIQAQSDNVEIIADQVLKLISAKRRIEITAAEEILLNARGSYIRINGAGIEHGTP AQWIAYAGNHALPGPKSLPVVVPGFDMPKAFSNRLDVYDVYWQREFGEVEYTARRENGEVMAQGTLDEHGRTPRLTTDQP ETLQVLVGTQGSWLVESVASSSSDSGEATPDDPDHYVNHSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100839; Mature: 100839
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMTEVAQAIRGGLIQQDRLLKASIPSLPENALVPRRAVTYSELGRDFSVKLDMVSTAGD CCHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCHHCCHHHHCCCEEEEEEEEECCCC IELKTLIAQPMTLWLQQANKSYLPINGYIHTARRLGSDGSLSSYQLAFASWMHFLKFRSD EEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH MRYWQNQSVDAILSDVFNAHPQARGQFEFALLKPLPSRSYCRQSETDWNFVHRLMEEEGL HHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHCCC FGFWRQDNEGKSHKLVVTDNIYSLDELSPNPVEFSRSGARSETDAFTQWAGSRTLQSTVH EEEEECCCCCCCEEEEEECCCEEHHCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH TTRTFDYKAPSPITNPRGTTLPTMAGQGNLPEQTEVYEYTGAYTYLSRDRGEHLSKIHLE HHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCCHHHHHHHH EWESRAKRFLGVGGVRAIDAGRRFVLTGHPEHDRDPAGHREFASIKVRRYVENNLPLSSH HHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHEEEHHHCCCCCCCC EASFPYSLQSEVAQAKFEQSGEIVTHEDGSAGFYLVEVEAQRVTVPYRSPFEHKKPTMEL CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEE ETAIVVGPQGEEVYTDALNRVKIMFVWDRQSSGDANASCWVRVAQSDTGGGYGSVHVPRI EEEEEECCCCCHHHHHHHCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEECCCC GEEVLVGYVGGDCDRPIVLHRVYNGRVQPQWHSNGILSGYRSKEYAGAGYNEMVLDDATA CCEEEEEEECCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC QNRVRLFSSSSNTLLHLGYLIDQDGNTRGPYLGSGFDLKSDAHGAIRAAQGLFVSSYDAS CCEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEECCCCH VKQPMDARHATGQLANAQSVVQSLSDASAGHRAESLSAGYDALRAFTDATQASVAGISTG HCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCC GRTAGGGAGSANGFKAPIMLFASPAGIATSTQQSTQITADQHVNIVSGESTHLAAGKSLV CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCEEEECCCCCEEHHHHHHH ASVAEKVSLFVKNAGMKLFAAKGKVEIQAQSDNVEIIADQVLKLISAKRRIEITAAEEIL HHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCEEHHHHHHHHHHHCCCEEEEEEHHHHH LNARGSYIRINGAGIEHGTPAQWIAYAGNHALPGPKSLPVVVPGFDMPKAFSNRLDVYDV EECCCCEEEEECCCCCCCCCCHHEEECCCCCCCCCCCCCEEECCCCCCHHHHCCCCEEEE YWQREFGEVEYTARRENGEVMAQGTLDEHGRTPRLTTDQPETLQVLVGTQGSWLVESVAS EEECCCCCEEEEEECCCCCEEEECCHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHC SSSDSGEATPDDPDHYVNHSA CCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNMTEVAQAIRGGLIQQDRLLKASIPSLPENALVPRRAVTYSELGRDFSVKLDMVSTAGD CCHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCHHCCHHHHCCCEEEEEEEEECCCC IELKTLIAQPMTLWLQQANKSYLPINGYIHTARRLGSDGSLSSYQLAFASWMHFLKFRSD EEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH MRYWQNQSVDAILSDVFNAHPQARGQFEFALLKPLPSRSYCRQSETDWNFVHRLMEEEGL HHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHCCC FGFWRQDNEGKSHKLVVTDNIYSLDELSPNPVEFSRSGARSETDAFTQWAGSRTLQSTVH EEEEECCCCCCCEEEEEECCCEEHHCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH TTRTFDYKAPSPITNPRGTTLPTMAGQGNLPEQTEVYEYTGAYTYLSRDRGEHLSKIHLE HHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCCHHHHHHHH EWESRAKRFLGVGGVRAIDAGRRFVLTGHPEHDRDPAGHREFASIKVRRYVENNLPLSSH HHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHEEEHHHCCCCCCCC EASFPYSLQSEVAQAKFEQSGEIVTHEDGSAGFYLVEVEAQRVTVPYRSPFEHKKPTMEL CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEE ETAIVVGPQGEEVYTDALNRVKIMFVWDRQSSGDANASCWVRVAQSDTGGGYGSVHVPRI EEEEEECCCCCHHHHHHHCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEECCCC GEEVLVGYVGGDCDRPIVLHRVYNGRVQPQWHSNGILSGYRSKEYAGAGYNEMVLDDATA CCEEEEEEECCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC QNRVRLFSSSSNTLLHLGYLIDQDGNTRGPYLGSGFDLKSDAHGAIRAAQGLFVSSYDAS CCEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEECCCCH VKQPMDARHATGQLANAQSVVQSLSDASAGHRAESLSAGYDALRAFTDATQASVAGISTG HCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCC GRTAGGGAGSANGFKAPIMLFASPAGIATSTQQSTQITADQHVNIVSGESTHLAAGKSLV CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCEEEECCCCCEEHHHHHHH ASVAEKVSLFVKNAGMKLFAAKGKVEIQAQSDNVEIIADQVLKLISAKRRIEITAAEEIL HHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCEEHHHHHHHHHHHCCCEEEEEEHHHHH LNARGSYIRINGAGIEHGTPAQWIAYAGNHALPGPKSLPVVVPGFDMPKAFSNRLDVYDV EECCCCEEEEECCCCCCCCCCHHEEECCCCCCCCCCCCCEEECCCCCCHHHHCCCCEEEE YWQREFGEVEYTARRENGEVMAQGTLDEHGRTPRLTTDQPETLQVLVGTQGSWLVESVAS EEECCCCCEEEEEECCCCCEEEECCHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHC SSSDSGEATPDDPDHYVNHSA CCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA