| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027196
Identifier: 238027196
GI number: 238027196
Start: 1731349
End: 1733301
Strand: Direct
Name: 238027196
Synonym: bglu_1g15820
Alternate gene names: NA
Gene position: 1731349-1733301 (Clockwise)
Preceding gene: 238027195
Following gene: 238027197
Centisome position: 44.32
GC content: 61.8
Gene sequence:
>1953_bases ATGAAGAAGATCGTCTTCACCCTGACGGCAGCGTTCGCGCTGCTTTTTTCGTTTGTGCCTCGCCTGGCCGTCGCGCAGTT CGTCCCAGGTCAGATACTGACCGCGCAGCAACTGAATTCCGCATTCGCCGCCGTAACTGCGAATGCGTTGCCGTTGTCAG GTGGGACGCTGACAGGGCCACTGCAGGGCACCGCAGCGACATTCAACTCGGGTAGCTTCGCGAGCCTATCGAGCAGCGGC CCGGTGACGTTCTCGTCGCCCCTCGCGTTTTCCTCTGGCGGCACCGGCGCGACGACGGCGCTCGGCGCAACCAGCAACCT GCAGTTCCAGGCGTCGCTGTCCGGCGCCAGCGGCCGCTCGGTCGCAAGCAAGCTGAGCGACGTCGTGAGCATTCTCGACT TCCCGGGTTGCGACAAGACCGGGGTGGTCGATAGCACGGCTTGCATTCAGGCCGCGCTAAACTCCGGCGCGCGTACCGTC TACATCCCGGCGGGTCAGTACCGCGAAAGCGGCTTGGTCTTGCCGCAGACCGTCGGATTCACGCTCTACGGAGACGGTCC AAACAGCGTGTTGATCCAGACGGGCGGACCGATCCGCTATCCGACTATCAGCAGCAACTCGACGTTCGATTCGCATTCGA CGATTCGTGACTTGAAGTTCGACGGCACGGCCGGCACCGGCAACACCATCGATACGTCCTACGCCCAGACGCTCGACCTG CTCAATCTGGCGTTCAACAACGTACCCGTCGGCTACTCGTCGATCAAGCTTGATGGCAACCCGACGACGGGCATCTACAT GCACGACGTCCGAGCCAAAAATATCCGCGTCTACTCGACGACGGCGGGCAAGGCCGGCATCGAGCTCGGCGCCTACGCGT CTGACTCGACCATCGACGGCTTCATCATGAACGGCGGGTTCATCGTGAACTACTGCCTCTACGCGAATGTCGGCGCGCAG ACGACGATGATTCAAAACTCGCACCCGTACAACGCTGCGATCAACGTCATTCGATTGGCCGGAAATAACAACGATTTCGG TTTCGTCGGTAACACGATCGACAACGCGCTCGGCGATCTGTTCTACGTGAAAGGATCGGCGCGCACGCGCATCAGCTCGA TATGGCTTGAGGCTATTGCGAGCGGGCAACGCGGCCTAGTGCTCGACGCGTCGACCAATACGAACGTGATGGGCATATCG TGCGAGGCCGCCAGCGTTACGGCGACGTCTTGCGTGGCTGAGATCAACGGAGCGTCAGCGAATCGCGTATTCGCGGGGCA AGTCGATTCGGCATCGAACTATGCGACACCCTTCAATTTGAACGGGACCGGAAGCCTATATCAAGCGACGAACAGCGGCA ATTCTCTGAACGCGATGAGCGCGGCGGCAGGTAATTCGCCGTCGCTGAGCGCGTCCGGGGCAGATAGCTCGATTCCGATC ACGCTGAACCCGAAGGGGAGCGGCGGCGTGGTTCTGAACTTCAGCAACTCGGTCACGGCTGCGTACTACTCGGACACGGC CGGCGAGTTGGCACTCGAGGTCTATAACATCTCGACGCCGAGCACGAAATACAACCTGAATCTCGTGAAGTACGGAGGGC GCTTGCTGCTTGGCGGCGTCGACGACGGAGCGAACAAGTTGCAGGTCGGCGGCTCCGCTGCGGTGTACGGGAACCTGACC GTAACCGGCGCTGGCGCGATGCCCTTGTACTCGACGGCTGGCGCGGCTGCCAACGCACCGCACATGGTGAAGGGGACGGC GACGCTCGCCTCGGGCGCGGCCACGGTCGCGCTTTCGGGCGCTGCTGCCTATACCTCGTCAACCAGCTACGCGTGCACGG CAACCGACACGACCGCGGCAAACGCGGTGCGAGTCTCGCAGACATCAGGAACCTCGTTCGCCTTGAGTGGCACTGGAACC GATGTGGTGCAGTTCCTGTGCGCGGGAAACTGA
Upstream 100 bases:
>100_bases TGCGAACGACGGGCAACAGTGGTACGTCGTCAACGGAGCGCTGACGAAAACTACGCCGACGCCGGATGTTCCGGACACCA CCACCTGACTCGAGTCCCAC
Downstream 100 bases:
>100_bases TTACACGCTGTACCAGCAGCCAGCCGCCCGCGAGGCGGCTTTTTCATTTCGGGGGATTGATGGCTGATATGCCAACCAAC GACGTCGTCGAGCGCCGCCT
Product: outer membrane autotransporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 650; Mature: 650
Protein sequence:
>650_residues MKKIVFTLTAAFALLFSFVPRLAVAQFVPGQILTAQQLNSAFAAVTANALPLSGGTLTGPLQGTAATFNSGSFASLSSSG PVTFSSPLAFSSGGTGATTALGATSNLQFQASLSGASGRSVASKLSDVVSILDFPGCDKTGVVDSTACIQAALNSGARTV YIPAGQYRESGLVLPQTVGFTLYGDGPNSVLIQTGGPIRYPTISSNSTFDSHSTIRDLKFDGTAGTGNTIDTSYAQTLDL LNLAFNNVPVGYSSIKLDGNPTTGIYMHDVRAKNIRVYSTTAGKAGIELGAYASDSTIDGFIMNGGFIVNYCLYANVGAQ TTMIQNSHPYNAAINVIRLAGNNNDFGFVGNTIDNALGDLFYVKGSARTRISSIWLEAIASGQRGLVLDASTNTNVMGIS CEAASVTATSCVAEINGASANRVFAGQVDSASNYATPFNLNGTGSLYQATNSGNSLNAMSAAAGNSPSLSASGADSSIPI TLNPKGSGGVVLNFSNSVTAAYYSDTAGELALEVYNISTPSTKYNLNLVKYGGRLLLGGVDDGANKLQVGGSAAVYGNLT VTGAGAMPLYSTAGAAANAPHMVKGTATLASGAATVALSGAAAYTSSTSYACTATDTTAANAVRVSQTSGTSFALSGTGT DVVQFLCAGN
Sequences:
>Translated_650_residues MKKIVFTLTAAFALLFSFVPRLAVAQFVPGQILTAQQLNSAFAAVTANALPLSGGTLTGPLQGTAATFNSGSFASLSSSG PVTFSSPLAFSSGGTGATTALGATSNLQFQASLSGASGRSVASKLSDVVSILDFPGCDKTGVVDSTACIQAALNSGARTV YIPAGQYRESGLVLPQTVGFTLYGDGPNSVLIQTGGPIRYPTISSNSTFDSHSTIRDLKFDGTAGTGNTIDTSYAQTLDL LNLAFNNVPVGYSSIKLDGNPTTGIYMHDVRAKNIRVYSTTAGKAGIELGAYASDSTIDGFIMNGGFIVNYCLYANVGAQ TTMIQNSHPYNAAINVIRLAGNNNDFGFVGNTIDNALGDLFYVKGSARTRISSIWLEAIASGQRGLVLDASTNTNVMGIS CEAASVTATSCVAEINGASANRVFAGQVDSASNYATPFNLNGTGSLYQATNSGNSLNAMSAAAGNSPSLSASGADSSIPI TLNPKGSGGVVLNFSNSVTAAYYSDTAGELALEVYNISTPSTKYNLNLVKYGGRLLLGGVDDGANKLQVGGSAAVYGNLT VTGAGAMPLYSTAGAAANAPHMVKGTATLASGAATVALSGAAAYTSSTSYACTATDTTAANAVRVSQTSGTSFALSGTGT DVVQFLCAGN >Mature_650_residues MKKIVFTLTAAFALLFSFVPRLAVAQFVPGQILTAQQLNSAFAAVTANALPLSGGTLTGPLQGTAATFNSGSFASLSSSG PVTFSSPLAFSSGGTGATTALGATSNLQFQASLSGASGRSVASKLSDVVSILDFPGCDKTGVVDSTACIQAALNSGARTV YIPAGQYRESGLVLPQTVGFTLYGDGPNSVLIQTGGPIRYPTISSNSTFDSHSTIRDLKFDGTAGTGNTIDTSYAQTLDL LNLAFNNVPVGYSSIKLDGNPTTGIYMHDVRAKNIRVYSTTAGKAGIELGAYASDSTIDGFIMNGGFIVNYCLYANVGAQ TTMIQNSHPYNAAINVIRLAGNNNDFGFVGNTIDNALGDLFYVKGSARTRISSIWLEAIASGQRGLVLDASTNTNVMGIS CEAASVTATSCVAEINGASANRVFAGQVDSASNYATPFNLNGTGSLYQATNSGNSLNAMSAAAGNSPSLSASGADSSIPI TLNPKGSGGVVLNFSNSVTAAYYSDTAGELALEVYNISTPSTKYNLNLVKYGGRLLLGGVDDGANKLQVGGSAAVYGNLT VTGAGAMPLYSTAGAAANAPHMVKGTATLASGAATVALSGAAAYTSSTSYACTATDTTAANAVRVSQTSGTSFALSGTGT DVVQFLCAGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65706; Mature: 65706
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: PS00800 PECTINESTERASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIVFTLTAAFALLFSFVPRLAVAQFVPGQILTAQQLNSAFAAVTANALPLSGGTLTGP CCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCEEEEEECCEECCCCEEECC LQGTAATFNSGSFASLSSSGPVTFSSPLAFSSGGTGATTALGATSNLQFQASLSGASGRS CCCCEEEECCCCEEEECCCCCEEEECCEEECCCCCCCEEEECCCCCEEEEEEECCCCCHH VASKLSDVVSILDFPGCDKTGVVDSTACIQAALNSGARTVYIPAGQYRESGLVLPQTVGF HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCE TLYGDGPNSVLIQTGGPIRYPTISSNSTFDSHSTIRDLKFDGTAGTGNTIDTSYAQTLDL EEECCCCCEEEEECCCCEECCEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH LNLAFNNVPVGYSSIKLDGNPTTGIYMHDVRAKNIRVYSTTAGKAGIELGAYASDSTIDG HHHHHCCCCCCCEEEEECCCCCCCEEEEEEEECEEEEEEECCCCCCEEEECCCCCCCCCE FIMNGGFIVNYCLYANVGAQTTMIQNSHPYNAAINVIRLAGNNNDFGFVGNTIDNALGDL EEECCCEEEEEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCCCEECCHHHHHCCCE FYVKGSARTRISSIWLEAIASGQRGLVLDASTNTNVMGISCEAASVTATSCVAEINGASA EEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCCEEHHHHHEECCCCCC NRVFAGQVDSASNYATPFNLNGTGSLYQATNSGNSLNAMSAAAGNSPSLSASGADSSIPI CEEEEECCCCCCCCCCCEECCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCEE TLNPKGSGGVVLNFSNSVTAAYYSDTAGELALEVYNISTPSTKYNLNLVKYGGRLLLGGV EECCCCCCCEEEEECCCEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEECCEEEEECC DDGANKLQVGGSAAVYGNLTVTGAGAMPLYSTAGAAANAPHMVKGTATLASGAATVALSG CCCCCEEEECCCEEEEEEEEEECCCCCCEEECCCCCCCCCEEEECCCHHCCCCEEEEEEC AAAYTSSTSYACTATDTTAANAVRVSQTSGTSFALSGTGTDVVQFLCAGN CEEECCCCCEEEEECCCCCCCEEEEEECCCCEEEEECCCHHHHHHEECCC >Mature Secondary Structure MKKIVFTLTAAFALLFSFVPRLAVAQFVPGQILTAQQLNSAFAAVTANALPLSGGTLTGP CCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCEEEEEECCEECCCCEEECC LQGTAATFNSGSFASLSSSGPVTFSSPLAFSSGGTGATTALGATSNLQFQASLSGASGRS CCCCEEEECCCCEEEECCCCCEEEECCEEECCCCCCCEEEECCCCCEEEEEEECCCCCHH VASKLSDVVSILDFPGCDKTGVVDSTACIQAALNSGARTVYIPAGQYRESGLVLPQTVGF HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCE TLYGDGPNSVLIQTGGPIRYPTISSNSTFDSHSTIRDLKFDGTAGTGNTIDTSYAQTLDL EEECCCCCEEEEECCCCEECCEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH LNLAFNNVPVGYSSIKLDGNPTTGIYMHDVRAKNIRVYSTTAGKAGIELGAYASDSTIDG HHHHHCCCCCCCEEEEECCCCCCCEEEEEEEECEEEEEEECCCCCCEEEECCCCCCCCCE FIMNGGFIVNYCLYANVGAQTTMIQNSHPYNAAINVIRLAGNNNDFGFVGNTIDNALGDL EEECCCEEEEEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCCCEECCHHHHHCCCE FYVKGSARTRISSIWLEAIASGQRGLVLDASTNTNVMGISCEAASVTATSCVAEINGASA EEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCCEEHHHHHEECCCCCC NRVFAGQVDSASNYATPFNLNGTGSLYQATNSGNSLNAMSAAAGNSPSLSASGADSSIPI CEEEEECCCCCCCCCCCEECCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCEE TLNPKGSGGVVLNFSNSVTAAYYSDTAGELALEVYNISTPSTKYNLNLVKYGGRLLLGGV EECCCCCCCEEEEECCCEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEECCEEEEECC DDGANKLQVGGSAAVYGNLTVTGAGAMPLYSTAGAAANAPHMVKGTATLASGAATVALSG CCCCCEEEECCCEEEEEEEEEECCCCCCEEECCCCCCCCCEEEECCCHHCCCCEEEEEEC AAAYTSSTSYACTATDTTAANAVRVSQTSGTSFALSGTGTDVVQFLCAGN CEEECCCCCEEEEECCCCCCCEEEEEECCCCEEEEECCCHHHHHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA