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The map label for this gene is rpoS [H]

Identifier: 238027063

GI number: 238027063

Start: 1587228

End: 1588322

Strand: Direct

Name: rpoS [H]

Synonym: bglu_1g14420

Alternate gene names: 238027063

Gene position: 1587228-1588322 (Clockwise)

Preceding gene: 238027062

Following gene: 238027064

Centisome position: 40.63

GC content: 65.3

Gene sequence:

>1095_bases
ATGCCGAAATCGAAGCGCCACGAGCCGCAAGCCGAATCTGAGAAGATCAGTCGTGCCACGCAAGCATCGATGGGGCGCGC
TGGCGCTTCGAAGGACGACGATGACGACACCGCCGAGAGCGAGCGTGAGTACGAGGCGCGTGAATCCGATGCGGAGGAGT
CCGACGGCGAGCGCGAAGGGCGGGGCGGCAGCGAGAGCGCGCCCGAGCCCGACGATTTCCGCGCGGTGCTGCAGGCGGAA
CTGACCGCCGACACGATCCAGCACTATCTGAACCGCATCAGCGTCAAGCCGCTCCTGACCGTCGAGGAGGAGCAGCGATA
TTCGCGGCTCGCGAAGGCGGGCGAGTTCGAGGCGCGGCAGGTGATGATCGAGCGCAATCTGCGGCTCGTGGTCAGTATCG
CAAAGGGCTATCTGAATCGTGGCGTGCCCCTGCTCGACCTGATCGAGGAAGGCAACCTCGGCCTGATGCATGCGATCGAG
AAATTCGATCCCACGCGCGGCTTCCGCTTTTCGACCTATGCCACTTGGTGGATCCGGCAGAGCATCGAGCGCGCGATCAT
GAACCAGGCGCGCACCGTGCGGCTGCCGGTGCACGTGATCCGCGAACTGAACCAGGTGCTGCGTGCCAAGCGTCATCTGG
AAAAGAATTCGATGTCGACGGGCGAGGCCGCCGAGCGCCGCGAAGCCGGCATCGACGATATCGCCTACCTCACCGGCAAG
ACGGCCGAGGAGGTGACCGACATCCTTGCGCTCAACGAGCATACCGCCTCGCTCGACGCGCCACTCGACCTCGATCCGGC
GAGCAGCCTGCTCGATCTGCTGCCCGACGACCAGAGCCAGTCGCCCGACGCGGAGGTCCAGCACCGCGAGCTCGAAACGC
TGACGCGCGCCTGGCTGTCGCGGCTGTCCGACAAGCATCGCCACGTGATCGAGCGACGCTTCGGGCTCAACCACATCGAA
CCCGCGACGCTCGAGGAACTGGCCGACGAGATGGGCCTGACCCGCGAGCGCGTCCGGCAGATCCAGCAGGAAGCGCTGGT
ACGCCTGAAGCGGTTCTTCGCCTCCAATGGCGTTCGCAAGGACGCCGTTCTGTAA

Upstream 100 bases:

>100_bases
ATAGCGACTCCGACCGCGTGATGTTGCATTTCGAGGTCCGCCGGCAGGGCAAACCTGTCGATCCGCTGAAGTATCTGCCG
CCTCAATAGACGAGACGACC

Downstream 100 bases:

>100_bases
CCGATTGATGACTCCGATTCTGGTATTTGACATCGAGACGATTCCCGATGTCGACGGCATCCGCCGTCTTGAAGACCTGC
CGTCCGACCTCTCCGACGCG

Product: RNA polymerase sigma factor RpoS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 363

Protein sequence:

>364_residues
MPKSKRHEPQAESEKISRATQASMGRAGASKDDDDDTAESEREYEARESDAEESDGEREGRGGSESAPEPDDFRAVLQAE
LTADTIQHYLNRISVKPLLTVEEEQRYSRLAKAGEFEARQVMIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIE
KFDPTRGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKNSMSTGEAAERREAGIDDIAYLTGK
TAEEVTDILALNEHTASLDAPLDLDPASSLLDLLPDDQSQSPDAEVQHRELETLTRAWLSRLSDKHRHVIERRFGLNHIE
PATLEELADEMGLTRERVRQIQQEALVRLKRFFASNGVRKDAVL

Sequences:

>Translated_364_residues
MPKSKRHEPQAESEKISRATQASMGRAGASKDDDDDTAESEREYEARESDAEESDGEREGRGGSESAPEPDDFRAVLQAE
LTADTIQHYLNRISVKPLLTVEEEQRYSRLAKAGEFEARQVMIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIE
KFDPTRGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKNSMSTGEAAERREAGIDDIAYLTGK
TAEEVTDILALNEHTASLDAPLDLDPASSLLDLLPDDQSQSPDAEVQHRELETLTRAWLSRLSDKHRHVIERRFGLNHIE
PATLEELADEMGLTRERVRQIQQEALVRLKRFFASNGVRKDAVL
>Mature_363_residues
PKSKRHEPQAESEKISRATQASMGRAGASKDDDDDTAESEREYEARESDAEESDGEREGRGGSESAPEPDDFRAVLQAEL
TADTIQHYLNRISVKPLLTVEEEQRYSRLAKAGEFEARQVMIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIEK
FDPTRGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKNSMSTGEAAERREAGIDDIAYLTGKT
AEEVTDILALNEHTASLDAPLDLDPASSLLDLLPDDQSQSPDAEVQHRELETLTRAWLSRLSDKHRHVIERRFGLNHIEP
ATLEELADEMGLTRERVRQIQQEALVRLKRFFASNGVRKDAVL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in acid resistance [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1789098, Length=284, Percent_Identity=50, Blast_Score=264, Evalue=7e-72,
Organism=Escherichia coli, GI1789448, Length=264, Percent_Identity=37.8787878787879, Blast_Score=175, Evalue=5e-45,
Organism=Escherichia coli, GI1789871, Length=286, Percent_Identity=27.6223776223776, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: <10 (log phase) 250 (stationary phase) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 41283; Mature: 41151

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKSKRHEPQAESEKISRATQASMGRAGASKDDDDDTAESEREYEARESDAEESDGEREG
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCCCCC
RGGSESAPEPDDFRAVLQAELTADTIQHYLNRISVKPLLTVEEEQRYSRLAKAGEFEARQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHCCCHHHHH
VMIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPTRGFRFSTYATWWIRQ
HHHHHCHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCCCCCEEHHHHHHHHHH
SIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKNSMSTGEAAERREAGIDDIAYLTGK
HHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHCCC
TAEEVTDILALNEHTASLDAPLDLDPASSLLDLLPDDQSQSPDAEVQHRELETLTRAWLS
CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
RLSDKHRHVIERRFGLNHIEPATLEELADEMGLTRERVRQIQQEALVRLKRFFASNGVRK
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
DAVL
HCCC
>Mature Secondary Structure 
PKSKRHEPQAESEKISRATQASMGRAGASKDDDDDTAESEREYEARESDAEESDGEREG
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCCCCC
RGGSESAPEPDDFRAVLQAELTADTIQHYLNRISVKPLLTVEEEQRYSRLAKAGEFEARQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHCCCHHHHH
VMIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPTRGFRFSTYATWWIRQ
HHHHHCHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCCCCCEEHHHHHHHHHH
SIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKNSMSTGEAAERREAGIDDIAYLTGK
HHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHCCC
TAEEVTDILALNEHTASLDAPLDLDPASSLLDLLPDDQSQSPDAEVQHRELETLTRAWLS
CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
RLSDKHRHVIERRFGLNHIEPATLEELADEMGLTRERVRQIQQEALVRLKRFFASNGVRK
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
DAVL
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]