| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027064
Identifier: 238027064
GI number: 238027064
Start: 1588330
End: 1589106
Strand: Direct
Name: 238027064
Synonym: bglu_1g14430
Alternate gene names: NA
Gene position: 1588330-1589106 (Clockwise)
Preceding gene: 238027063
Following gene: 238027066
Centisome position: 40.66
GC content: 65.25
Gene sequence:
>777_bases ATGACTCCGATTCTGGTATTTGACATCGAGACGATTCCCGATGTCGACGGCATCCGCCGTCTTGAAGACCTGCCGTCCGA CCTCTCCGACGCGGAAGTGGCCGAGCATGCATTCGATGCGCGCCGCGAGAAGACCGGCAGCGATTTCCTGCCGCATCATC TGCAGCGCGTTGCGGCGATTTCCTGCGTGTTCCGCGACAAGGGCGGGTTCCGCGTCCGCTCGCTCGGCACCGCGCAGGAC GGCGAGGCCGCGCTGATCCAGTCGTTCTACCGCACCATCGAGAAATACACGCCGCAACTCGTCTCGTGGAACGGCGGCGG CTTCGACCTGCCGGTGCTTCACTACCGCGCGCTGGTGCACGGCATCGCGGCGCCGCGCTACTGGGACATGGGCGAGGACG ATCGCGAGTTCAAGTGGAACAACTACCTGTCGCGCTATCACAGCCGGCATACCGACCTGATGGACCTGCTCGCGCTCTAC CAGCCGCGCGCGAGCGCCCCGCTCGATGCAATGGCCAGGCTGTGCGGCTTTCCGGGCAAGCTCGGGATGGACGGCGGCCA GGTATGGGAGGCTTATCGCGACGGCCAGATCGACGACATCCGTCATTATTGCGAGACCGACGTCGTCAATACCTACCTGC TGTACTGCCGCTTTCAGATGATGCGCGGCGGGCTCACGCCCCCCGAGTATGCCGACGAGATCCGGCTCGTGAAGGAGGCG CTCGCGGCCGAGCCGGCGCCGCATTGGGCCCAGTACCTGGCGGCGTTCCCCAAGTAG
Upstream 100 bases:
>100_bases CGCGAGCGCGTCCGGCAGATCCAGCAGGAAGCGCTGGTACGCCTGAAGCGGTTCTTCGCCTCCAATGGCGTTCGCAAGGA CGCCGTTCTGTAACCGATTG
Downstream 100 bases:
>100_bases GCGGCAGCGCGTTTGTCCGGGCCGCCCGCGCGCCGGCCCGGCGTGAACCGCGCGGCAGCGCCCTGGTCAGTCGCGCAGTT CGAGCAGGATCGGCTGGTGA
Product: 3'-5' exonuclease
Products: NA
Alternate protein names: 3-5' Exonuclease PolB-Like Protein; Polysaccharide Biosynthesis Protein; Propable PolB; Polysaccharide Biosynthesis Protein WlaX; Lipoprotein SmpA/OmlA Family; 3&Apos; Large-Conductance Mechanosensitive Channel
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MTPILVFDIETIPDVDGIRRLEDLPSDLSDAEVAEHAFDARREKTGSDFLPHHLQRVAAISCVFRDKGGFRVRSLGTAQD GEAALIQSFYRTIEKYTPQLVSWNGGGFDLPVLHYRALVHGIAAPRYWDMGEDDREFKWNNYLSRYHSRHTDLMDLLALY QPRASAPLDAMARLCGFPGKLGMDGGQVWEAYRDGQIDDIRHYCETDVVNTYLLYCRFQMMRGGLTPPEYADEIRLVKEA LAAEPAPHWAQYLAAFPK
Sequences:
>Translated_258_residues MTPILVFDIETIPDVDGIRRLEDLPSDLSDAEVAEHAFDARREKTGSDFLPHHLQRVAAISCVFRDKGGFRVRSLGTAQD GEAALIQSFYRTIEKYTPQLVSWNGGGFDLPVLHYRALVHGIAAPRYWDMGEDDREFKWNNYLSRYHSRHTDLMDLLALY QPRASAPLDAMARLCGFPGKLGMDGGQVWEAYRDGQIDDIRHYCETDVVNTYLLYCRFQMMRGGLTPPEYADEIRLVKEA LAAEPAPHWAQYLAAFPK >Mature_257_residues TPILVFDIETIPDVDGIRRLEDLPSDLSDAEVAEHAFDARREKTGSDFLPHHLQRVAAISCVFRDKGGFRVRSLGTAQDG EAALIQSFYRTIEKYTPQLVSWNGGGFDLPVLHYRALVHGIAAPRYWDMGEDDREFKWNNYLSRYHSRHTDLMDLLALYQ PRASAPLDAMARLCGFPGKLGMDGGQVWEAYRDGQIDDIRHYCETDVVNTYLLYCRFQMMRGGLTPPEYADEIRLVKEAL AAEPAPHWAQYLAAFPK
Specific function: Unknown
COG id: COG3298
COG function: function code L; Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29372; Mature: 29240
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPILVFDIETIPDVDGIRRLEDLPSDLSDAEVAEHAFDARREKTGSDFLPHHLQRVAAI CCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH SCVFRDKGGFRVRSLGTAQDGEAALIQSFYRTIEKYTPQLVSWNGGGFDLPVLHYRALVH HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHH GIAAPRYWDMGEDDREFKWNNYLSRYHSRHTDLMDLLALYQPRASAPLDAMARLCGFPGK HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC LGMDGGQVWEAYRDGQIDDIRHYCETDVVNTYLLYCRFQMMRGGLTPPEYADEIRLVKEA CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LAAEPAPHWAQYLAAFPK HHCCCCHHHHHHHHHCCC >Mature Secondary Structure TPILVFDIETIPDVDGIRRLEDLPSDLSDAEVAEHAFDARREKTGSDFLPHHLQRVAAI CCEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH SCVFRDKGGFRVRSLGTAQDGEAALIQSFYRTIEKYTPQLVSWNGGGFDLPVLHYRALVH HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHH GIAAPRYWDMGEDDREFKWNNYLSRYHSRHTDLMDLLALYQPRASAPLDAMARLCGFPGK HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC LGMDGGQVWEAYRDGQIDDIRHYCETDVVNTYLLYCRFQMMRGGLTPPEYADEIRLVKEA CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LAAEPAPHWAQYLAAFPK HHCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA