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The map label for this gene is nlpD [C]

Identifier: 238027062

GI number: 238027062

Start: 1586308

End: 1587216

Strand: Direct

Name: nlpD [C]

Synonym: bglu_1g14410

Alternate gene names: 238027062

Gene position: 1586308-1587216 (Clockwise)

Preceding gene: 339905964

Following gene: 238027063

Centisome position: 40.61

GC content: 67.77

Gene sequence:

>909_bases
ATGATTATGTTGCGCGCGATGCAAAACAATCGATCGACTATTCCGCTGACATACGGCCAGCGAATCGGCCAGCGCGCGAT
TTGTGCAGCTGCACTCCTGCTCGTCGCCGCCTGCGCGTCGCGACTCGATCAGGCGCCCGTCGTTGACCGCTCCGGCGCGC
TCGGCACCACCGCCTCGGCGCCCGCCGCGCCGGCGGCGGCGCCCGTACCGCTCGGCCCGCCGCCGCCCGGCTATTACCGG
GTGAAACCGGGCGACACGCTGTATCGCATCGCTCTCGAGAACGGCCAGAACTACCGCGACATCGCCGCGTGGAACAATCT
CGCGAACCCGAACCAGATCGAGGTCGATCAGCTGCTGCGCGTGGCGCCGCCGAACGGCGCGACCGCCTCGGTGCAGCCGG
GGGCGGTGCCGCCGCTGTCGAGCGGTCCCGCGATGCCGCCGATCTACGGTGCCAACGGCGCGAGCACCGGTGCCGGCACG
GCGGCGCCCGCCGCGGCGCCGGCGCCGGCACCGGTCGCGAACGACAAGGCTGCCGGCCCGAGCAGCGTGACGTTCGCATG
GCCGGTGCGCGGCCCGATCCTCAACACGTTCGACGATTCGAGGAACAAGGGCATCAATATCGGCGGGGCGGCCGGCACGC
CCGTGAAGGCCGCCGCCGATGGCCGCGTGGTCTACGCCGGCAACGGTCTGCGCGGTTACGGCAACCTCATTATCGTCAAG
CACGACGCAACCTATCTCACTGCGTATGCACACAACCGCGCTTTGATGGTAAAAGAGGGGGATTCCGTCACGAAAGGCCA
GAAGATCGCCGAGATGGGCAATAGCGACTCCGACCGCGTGATGTTGCATTTCGAGGTCCGCCGGCAGGGCAAACCTGTCG
ATCCGCTGAAGTATCTGCCGCCTCAATAG

Upstream 100 bases:

>100_bases
TGCTGACGCTCGTCGAGCGGGTCGGGCCGACGCAATGGCGGGAGTCCCGGCTTGATCGCGTTTTCTTTGTCCCCTTAAAA
TCCGGAGTGATTTGACACAG

Downstream 100 bases:

>100_bases
ACGAGACGACCATGCCGAAATCGAAGCGCCACGAGCCGCAAGCCGAATCTGAGAAGATCAGTCGTGCCACGCAAGCATCG
ATGGGGCGCGCTGGCGCTTC

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MIMLRAMQNNRSTIPLTYGQRIGQRAICAAALLLVAACASRLDQAPVVDRSGALGTTASAPAAPAAAPVPLGPPPPGYYR
VKPGDTLYRIALENGQNYRDIAAWNNLANPNQIEVDQLLRVAPPNGATASVQPGAVPPLSSGPAMPPIYGANGASTGAGT
AAPAAAPAPAPVANDKAAGPSSVTFAWPVRGPILNTFDDSRNKGINIGGAAGTPVKAAADGRVVYAGNGLRGYGNLIIVK
HDATYLTAYAHNRALMVKEGDSVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ

Sequences:

>Translated_302_residues
MIMLRAMQNNRSTIPLTYGQRIGQRAICAAALLLVAACASRLDQAPVVDRSGALGTTASAPAAPAAAPVPLGPPPPGYYR
VKPGDTLYRIALENGQNYRDIAAWNNLANPNQIEVDQLLRVAPPNGATASVQPGAVPPLSSGPAMPPIYGANGASTGAGT
AAPAAAPAPAPVANDKAAGPSSVTFAWPVRGPILNTFDDSRNKGINIGGAAGTPVKAAADGRVVYAGNGLRGYGNLIIVK
HDATYLTAYAHNRALMVKEGDSVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ
>Mature_302_residues
MIMLRAMQNNRSTIPLTYGQRIGQRAICAAALLLVAACASRLDQAPVVDRSGALGTTASAPAAPAAAPVPLGPPPPGYYR
VKPGDTLYRIALENGQNYRDIAAWNNLANPNQIEVDQLLRVAPPNGATASVQPGAVPPLSSGPAMPPIYGANGASTGAGT
AAPAAAPAPAPVANDKAAGPSSVTFAWPVRGPILNTFDDSRNKGINIGGAAGTPVKAAADGRVVYAGNGLRGYGNLIIVK
HDATYLTAYAHNRALMVKEGDSVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=265, Percent_Identity=36.9811320754717, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI87082174, Length=239, Percent_Identity=38.9121338912134, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=42.8571428571429, Blast_Score=92, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 31211; Mature: 31211

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMLRAMQNNRSTIPLTYGQRIGQRAICAAALLLVAACASRLDQAPVVDRSGALGTTASA
CEEEEEECCCCCEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PAAPAAAPVPLGPPPPGYYRVKPGDTLYRIALENGQNYRDIAAWNNLANPNQIEVDQLLR
CCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCHHHHHCCCCCCCEECHHHHHE
VAPPNGATASVQPGAVPPLSSGPAMPPIYGANGASTGAGTAAPAAAPAPAPVANDKAAGP
ECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSVTFAWPVRGPILNTFDDSRNKGINIGGAAGTPVKAAADGRVVYAGNGLRGYGNLIIVK
CCEEEEECCCCCEECCCCCCCCCCEEECCCCCCCEEECCCCEEEEECCCCCCCCCEEEEE
HDATYLTAYAHNRALMVKEGDSVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLP
ECCEEEEEEECCEEEEEECCCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCC
PQ
CC
>Mature Secondary Structure
MIMLRAMQNNRSTIPLTYGQRIGQRAICAAALLLVAACASRLDQAPVVDRSGALGTTASA
CEEEEEECCCCCEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PAAPAAAPVPLGPPPPGYYRVKPGDTLYRIALENGQNYRDIAAWNNLANPNQIEVDQLLR
CCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCHHHHHCCCCCCCEECHHHHHE
VAPPNGATASVQPGAVPPLSSGPAMPPIYGANGASTGAGTAAPAAAPAPAPVANDKAAGP
ECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSVTFAWPVRGPILNTFDDSRNKGINIGGAAGTPVKAAADGRVVYAGNGLRGYGNLIIVK
CCEEEEECCCCCEECCCCCCCCCCEEECCCCCCCEEECCCCEEEEECCCCCCCCCEEEEE
HDATYLTAYAHNRALMVKEGDSVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLP
ECCEEEEEEECCEEEEEECCCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCC
PQ
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]