| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ucpA [C]
Identifier: 238026329
GI number: 238026329
Start: 713227
End: 714018
Strand: Direct
Name: ucpA [C]
Synonym: bglu_1g06630
Alternate gene names: 238026329
Gene position: 713227-714018 (Clockwise)
Preceding gene: 238026328
Following gene: 238026330
Centisome position: 18.26
GC content: 75.25
Gene sequence:
>792_bases ATGGCTGAGCCGAGCGCCCGCCACGTGGTGATCAGCGGCGCGAGCGCCGGGCTGGGGCGCGCGCTCGCGCTCGCCTACGC CCGGCCCGGCGTCACGCTCGGCCTGATCGGGCGCGACCGCGAACGCATCGAGGCCGCCGCCGCCGCCTGTCGCGCGCGCG GCGCCGAGGTGCAGACGGGGGTGCTGGACGTGCGCGAGGCGGCCGCGACCGCTGCCTGGCTCGACGCGTTCGACGCGCGC CATCCGATCGGGCTGCTGATCGCGAATGCCGGCGTGGCCAGCACGATCGGCTCGGCGGACGACTGGGAAGGGCTCGAGCG CACCGCGCGGGTGGTCGACACCAACTTCTACGGCGCGCTCCACACCGTGCTGCCGGTGCTCGAGCGCATGCGCGCGCGCC GCGCCGGCCGGGTGGTGCTGGTCAGTTCGCTGGCCGCGCTGCGCGGCATGGCGATCTCGCCCGCCTACTGCGCGAGCAAG GCGGCGATCAAGGCCTGGGGCGATTCGGTGCGGCCGCTGCTGGCGCGCGACGGGGTGCGCGTGACGGTGGTGCTGCCCGG CTTCGTGAAGACCGCGATGAGCGACGTGTTTCCCGGCGACAAACCGTTCCTGTGGAGCGCCGAGCGCGCCGCCGCCCATA TCCGCCGCGGTCTGGACGCGGGCCGCAGCGAGATCGCCTTCCCGGCGCTGCTCGCGTTCGGCATGCGCCTGCTGCCGCTG CTGCCGGCCGCGCTGGCCGACGCGATCCTGGGCCGCCTGTCGTACCTGCCTGCCGAGGACGCGGCCAATTGA
Upstream 100 bases:
>100_bases GACTACGTGATGCACCACACCCAGATCAACGGCGATTTCTACACGCGCACCGGCATCGCGATGGCGGTGGCGGGCGCGGC CGACCGCCTGGAGCGCGCCG
Downstream 100 bases:
>100_bases GCCTGCTGCCCGGTCTCATGTTCGCGCTCACCGCGGCGCCGTCGTTCGCGCTCGAGCGCATCGCGCTGCCGCGCGGGCCG TGGCGCCGGCCGTGGCGGTC
Product: short-chain dehydrogenase/reductase family oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MAEPSARHVVISGASAGLGRALALAYARPGVTLGLIGRDRERIEAAAAACRARGAEVQTGVLDVREAAATAAWLDAFDAR HPIGLLIANAGVASTIGSADDWEGLERTARVVDTNFYGALHTVLPVLERMRARRAGRVVLVSSLAALRGMAISPAYCASK AAIKAWGDSVRPLLARDGVRVTVVLPGFVKTAMSDVFPGDKPFLWSAERAAAHIRRGLDAGRSEIAFPALLAFGMRLLPL LPAALADAILGRLSYLPAEDAAN
Sequences:
>Translated_263_residues MAEPSARHVVISGASAGLGRALALAYARPGVTLGLIGRDRERIEAAAAACRARGAEVQTGVLDVREAAATAAWLDAFDAR HPIGLLIANAGVASTIGSADDWEGLERTARVVDTNFYGALHTVLPVLERMRARRAGRVVLVSSLAALRGMAISPAYCASK AAIKAWGDSVRPLLARDGVRVTVVLPGFVKTAMSDVFPGDKPFLWSAERAAAHIRRGLDAGRSEIAFPALLAFGMRLLPL LPAALADAILGRLSYLPAEDAAN >Mature_262_residues AEPSARHVVISGASAGLGRALALAYARPGVTLGLIGRDRERIEAAAAACRARGAEVQTGVLDVREAAATAAWLDAFDARH PIGLLIANAGVASTIGSADDWEGLERTARVVDTNFYGALHTVLPVLERMRARRAGRVVLVSSLAALRGMAISPAYCASKA AIKAWGDSVRPLLARDGVRVTVVLPGFVKTAMSDVFPGDKPFLWSAERAAAHIRRGLDAGRSEIAFPALLAFGMRLLPLL PAALADAILGRLSYLPAEDAAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=214, Percent_Identity=33.1775700934579, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI40807363, Length=262, Percent_Identity=30.5343511450382, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=28.4974093264249, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI4503817, Length=185, Percent_Identity=27.5675675675676, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=28.3505154639175, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI22507405, Length=192, Percent_Identity=30.7291666666667, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI19743808, Length=222, Percent_Identity=26.1261261261261, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI142976729, Length=261, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI5031737, Length=227, Percent_Identity=28.1938325991189, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI40548397, Length=191, Percent_Identity=26.7015706806283, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI214010158, Length=191, Percent_Identity=26.7015706806283, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI214010156, Length=191, Percent_Identity=26.7015706806283, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI22758144, Length=191, Percent_Identity=26.7015706806283, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI40254992, Length=190, Percent_Identity=28.4210526315789, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI150247226, Length=222, Percent_Identity=27.9279279279279, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI50726952, Length=194, Percent_Identity=29.3814432989691, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI87082100, Length=199, Percent_Identity=33.6683417085427, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787820, Length=200, Percent_Identity=30.5, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI2367175, Length=197, Percent_Identity=29.4416243654822, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786701, Length=270, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790717, Length=212, Percent_Identity=24.5283018867925, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17565030, Length=228, Percent_Identity=29.8245614035088, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17563726, Length=196, Percent_Identity=28.0612244897959, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17567345, Length=193, Percent_Identity=26.4248704663212, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17560150, Length=198, Percent_Identity=28.2828282828283, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17538486, Length=210, Percent_Identity=31.4285714285714, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17538480, Length=206, Percent_Identity=29.126213592233, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562990, Length=198, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI72000259, Length=202, Percent_Identity=29.7029702970297, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17551412, Length=199, Percent_Identity=27.1356783919598, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI25152911, Length=254, Percent_Identity=26.7716535433071, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17560220, Length=208, Percent_Identity=26.9230769230769, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193210355, Length=203, Percent_Identity=25.615763546798, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17507613, Length=196, Percent_Identity=29.0816326530612, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI32563809, Length=198, Percent_Identity=28.7878787878788, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=31.4720812182741, Blast_Score=80, Evalue=4e-16, Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=31.7460317460317, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=36.5979381443299, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI281364892, Length=251, Percent_Identity=27.0916334661355, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI21357041, Length=191, Percent_Identity=31.413612565445, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24649181, Length=257, Percent_Identity=25.2918287937743, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI28571526, Length=197, Percent_Identity=31.4720812182741, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24584752, Length=187, Percent_Identity=28.3422459893048, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI21358495, Length=191, Percent_Identity=27.7486910994764, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI21356301, Length=186, Percent_Identity=29.0322580645161, Blast_Score=68, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27536; Mature: 27405
Theoretical pI: Translated: 10.18; Mature: 10.18
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEPSARHVVISGASAGLGRALALAYARPGVTLGLIGRDRERIEAAAAACRARGAEVQTG CCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHH VLDVREAAATAAWLDAFDARHPIGLLIANAGVASTIGSADDWEGLERTARVVDTNFYGAL HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHCCCHHHHH HTVLPVLERMRARRAGRVVLVSSLAALRGMAISPAYCASKAAIKAWGDSVRPLLARDGVR HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCE VTVVLPGFVKTAMSDVFPGDKPFLWSAERAAAHIRRGLDAGRSEIAFPALLAFGMRLLPL EEEEECHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LPAALADAILGRLSYLPAEDAAN HHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure AEPSARHVVISGASAGLGRALALAYARPGVTLGLIGRDRERIEAAAAACRARGAEVQTG CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHH VLDVREAAATAAWLDAFDARHPIGLLIANAGVASTIGSADDWEGLERTARVVDTNFYGAL HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHCCCHHHHH HTVLPVLERMRARRAGRVVLVSSLAALRGMAISPAYCASKAAIKAWGDSVRPLLARDGVR HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCE VTVVLPGFVKTAMSDVFPGDKPFLWSAERAAAHIRRGLDAGRSEIAFPALLAFGMRLLPL EEEEECHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LPAALADAILGRLSYLPAEDAAN HHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1730672 [H]