| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is kpsS [H]
Identifier: 238026328
GI number: 238026328
Start: 712047
End: 713234
Strand: Direct
Name: kpsS [H]
Synonym: bglu_1g06620
Alternate gene names: 238026328
Gene position: 712047-713234 (Clockwise)
Preceding gene: 238026323
Following gene: 238026329
Centisome position: 18.23
GC content: 66.67
Gene sequence:
>1188_bases GTGCTGCAAGGCACGGCTTCCACGTTTTTCAGTTCTTTGGCCGCGGTGCTTGAATCGCGTGGCCATGCCGTATATCGCGT CAATTTTTGCGGTGGAGACTGGTTCTATGGCAAAACTAAGCATGCCGTGAACTACAGCGGCGCGGCTGCCGATCTGCCGG CCTGGTATGCCGCCCTGGTGCAGCGTGAAAACATCACCGACGTCCTGATGTTCGGCGACTGCCGCGAAGTCCACCGCCCG CTGCACCCGATCGCCGAGCAATACGGCTTGCACGTGCATGTGTTCGAGGAGGGATATGTCCGTCCGCACTGGATCACGCT CGAGTCGCACGGCGTCAACGGCCGCTCGCGCATGCCGAGGGATCCCGCCGAGTTTCTGCGCCTGCGTGAGCATATTCCGC CCGCCGCGCCCGGCAAGCCGACCGGCTACAACCTCTACGAGCGCGTCTTCCACGACATCACGTACCGGCTCGCCAACGGC TTGCTGGCGTGGCGGTTTCCGCACTACCGCAGCCACCGCCCGAGGAACGGCTTGGTCGAATACGCCGGGCTCGCGTTCCG GGCGCTGATGCAGGGCCGGCACCACCGTCATGCCGAAGCCGTGACGCGCGCGGTGCTGGGCGGCGGCCGGCCGTACTACC TGTTCCCGCTGCAATTGAATTCGGACGCGCAGATCGTCGTGCATTCGCCGTTCGCGGGCGTGCGCGAGGCGATCGAGCGC GTGGTGCGCTCGTTCGCGCGCCACGCGCCGGACGACGCGCTGCTGCTGATCAAGAACCATCCGCTGGACACCGGCATGAT CGAATACCGGCGCTTCGCGCTGCGCATCGCCGGCGAGGAAGGCGTGGCGCAGCGGGTGGACTTCATCAACGCGGGCCACC TGCCGACGCTGCTCGAGCACGCGCGCGGCGTGGTGGTGGTGAACAGCACGGTGGGGCTCTCGGCGCTGCACCACGAGCGC CCGCTGATCACGCTGGGCACGGCCATTTACAATCTGCCCGGGCTGACCTGGCAGGGCACGCTCGACGAATTCTGGCGGCA GTGCGGCCAGCCCGACATGGACCTTTACCACGCGTTCCTCGACTACGTGATGCACCACACCCAGATCAACGGCGATTTCT ACACGCGCACCGGCATCGCGATGGCGGTGGCGGGCGCGGCCGACCGCCTGGAGCGCGCCGATGGCTGA
Upstream 100 bases:
>100_bases GCTCTGCCGAGGGGTATCGTCGGACGCCGCCGAGTGCCGCTTGGGCGTCTAGCAAGTCCGTGTTGTCCGTTATTCATTAC CGATGCCTCGCTCATTTCTA
Downstream 100 bases:
>100_bases GCCGAGCGCCCGCCACGTGGTGATCAGCGGCGCGAGCGCCGGGCTGGGGCGCGCGCTCGCGCTCGCCTACGCCCGGCCCG GCGTCACGCTCGGCCTGATC
Product: WcbO
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 395; Mature: 395
Protein sequence:
>395_residues MLQGTASTFFSSLAAVLESRGHAVYRVNFCGGDWFYGKTKHAVNYSGAAADLPAWYAALVQRENITDVLMFGDCREVHRP LHPIAEQYGLHVHVFEEGYVRPHWITLESHGVNGRSRMPRDPAEFLRLREHIPPAAPGKPTGYNLYERVFHDITYRLANG LLAWRFPHYRSHRPRNGLVEYAGLAFRALMQGRHHRHAEAVTRAVLGGGRPYYLFPLQLNSDAQIVVHSPFAGVREAIER VVRSFARHAPDDALLLIKNHPLDTGMIEYRRFALRIAGEEGVAQRVDFINAGHLPTLLEHARGVVVVNSTVGLSALHHER PLITLGTAIYNLPGLTWQGTLDEFWRQCGQPDMDLYHAFLDYVMHHTQINGDFYTRTGIAMAVAGAADRLERADG
Sequences:
>Translated_395_residues MLQGTASTFFSSLAAVLESRGHAVYRVNFCGGDWFYGKTKHAVNYSGAAADLPAWYAALVQRENITDVLMFGDCREVHRP LHPIAEQYGLHVHVFEEGYVRPHWITLESHGVNGRSRMPRDPAEFLRLREHIPPAAPGKPTGYNLYERVFHDITYRLANG LLAWRFPHYRSHRPRNGLVEYAGLAFRALMQGRHHRHAEAVTRAVLGGGRPYYLFPLQLNSDAQIVVHSPFAGVREAIER VVRSFARHAPDDALLLIKNHPLDTGMIEYRRFALRIAGEEGVAQRVDFINAGHLPTLLEHARGVVVVNSTVGLSALHHER PLITLGTAIYNLPGLTWQGTLDEFWRQCGQPDMDLYHAFLDYVMHHTQINGDFYTRTGIAMAVAGAADRLERADG >Mature_395_residues MLQGTASTFFSSLAAVLESRGHAVYRVNFCGGDWFYGKTKHAVNYSGAAADLPAWYAALVQRENITDVLMFGDCREVHRP LHPIAEQYGLHVHVFEEGYVRPHWITLESHGVNGRSRMPRDPAEFLRLREHIPPAAPGKPTGYNLYERVFHDITYRLANG LLAWRFPHYRSHRPRNGLVEYAGLAFRALMQGRHHRHAEAVTRAVLGGGRPYYLFPLQLNSDAQIVVHSPFAGVREAIER VVRSFARHAPDDALLLIKNHPLDTGMIEYRRFALRIAGEEGVAQRVDFINAGHLPTLLEHARGVVVVNSTVGLSALHHER PLITLGTAIYNLPGLTWQGTLDEFWRQCGQPDMDLYHAFLDYVMHHTQINGDFYTRTGIAMAVAGAADRLERADG
Specific function: Unknown
COG id: COG3562
COG function: function code M; Capsule polysaccharide export protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007833 [H]
Pfam domain/function: PF05159 Capsule_synth [H]
EC number: NA
Molecular weight: Translated: 44464; Mature: 44464
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQGTASTFFSSLAAVLESRGHAVYRVNFCGGDWFYGKTKHAVNYSGAAADLPAWYAALV CCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH QRENITDVLMFGDCREVHRPLHPIAEQYGLHVHVFEEGYVRPHWITLESHGVNGRSRMPR HCCCCCEEEEECCHHHHHCCHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCCCCCCCCC DPAEFLRLREHIPPAAPGKPTGYNLYERVFHDITYRLANGLLAWRFPHYRSHRPRNGLVE CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHH YAGLAFRALMQGRHHRHAEAVTRAVLGGGRPYYLFPLQLNSDAQIVVHSPFAGVREAIER HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEECCCHHHHHHHHH VVRSFARHAPDDALLLIKNHPLDTGMIEYRRFALRIAGEEGVAQRVDFINAGHLPTLLEH HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHEEECCCCCHHHHHHHCCCCCHHHHHHH ARGVVVVNSTVGLSALHHERPLITLGTAIYNLPGLTWQGTLDEFWRQCGQPDMDLYHAFL CCCEEEEECCCCHHHHHCCCCEEEECHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHH DYVMHHTQINGDFYTRTGIAMAVAGAADRLERADG HHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLQGTASTFFSSLAAVLESRGHAVYRVNFCGGDWFYGKTKHAVNYSGAAADLPAWYAALV CCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH QRENITDVLMFGDCREVHRPLHPIAEQYGLHVHVFEEGYVRPHWITLESHGVNGRSRMPR HCCCCCEEEEECCHHHHHCCHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCCCCCCCCC DPAEFLRLREHIPPAAPGKPTGYNLYERVFHDITYRLANGLLAWRFPHYRSHRPRNGLVE CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHH YAGLAFRALMQGRHHRHAEAVTRAVLGGGRPYYLFPLQLNSDAQIVVHSPFAGVREAIER HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEECCCHHHHHHHHH VVRSFARHAPDDALLLIKNHPLDTGMIEYRRFALRIAGEEGVAQRVDFINAGHLPTLLEH HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHEEECCCCCHHHHHHHCCCCCHHHHHHH ARGVVVVNSTVGLSALHHERPLITLGTAIYNLPGLTWQGTLDEFWRQCGQPDMDLYHAFL CCCEEEEECCCCHHHHHCCCCEEEECHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHH DYVMHHTQINGDFYTRTGIAMAVAGAADRLERADG HHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8397187; 1735705 [H]