Click here to switch to the map view.

The map label for this gene is yrbD [C]

Identifier: 238025996

GI number: 238025996

Start: 343728

End: 344234

Strand: Direct

Name: yrbD [C]

Synonym: bglu_1g03220

Alternate gene names: 238025996

Gene position: 343728-344234 (Clockwise)

Preceding gene: 238025995

Following gene: 238025997

Centisome position: 8.8

GC content: 63.91

Gene sequence:

>507_bases
ATGACGATGAAAAAGACTGCTCTCGACTTCTGGGTCGGCCTGTTCGTGCTGGTGGGTTTCCTGGCGCTGCTGTTTCTCGC
CCTGAAGGTGGGCAACATGAGCTCGCTGTCGTTCCAGCCGACCTATCCCGTCAAGATGAGGTTCGACAATATCGGCGGCC
TGAAGCCGCGCGCGGCCGTGAAGAGCGCGGGCGTGGTGGTGGGCCGGGTCGGTACGATCGGCTTCGACACCAACACCTAC
CAGGCGCTGGTGACGATCGAGCTCGACAAGCAATACGCATTCCCGAAGGACAGTTCTGCCAAGATCCTGACTTCGGGCCT
GCTCGGCGAGCAGTACATCGGCCTTGAGCCGGGTGGTGACACCGAGATGCTGAAGCCGGGCGACACGATCACGATGACGC
AGTCGGCGATCGTGCTCGAGAACCTGATCGGACAGTTCCTGTACAGCAAGGCCGCGGACGCGGGCGGCGGCAAGCCGGCC
GCGGCGCCGGGGGCGGCCGCCCATTGA

Upstream 100 bases:

>100_bases
CGCGCCACCACCCGCACCGTCGTGTACGCCTCGCTCGCGGTACTCGGCCTCGATTTCCTGCTGACCGCGCTGATGTTCAG
CTGAGTCGGCCTTTTCAGAG

Downstream 100 bases:

>100_bases
GCGCTCGCGCCGTCCCCGCCGGCGAGGCACCAGACGAAGAAAAGAGAAAATAGGGAACACGATCATGCAGACCATGCGCC
TCAGGAACGCGGGCTTGACC

Product: ABC transporter periplasmic substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MTMKKTALDFWVGLFVLVGFLALLFLALKVGNMSSLSFQPTYPVKMRFDNIGGLKPRAAVKSAGVVVGRVGTIGFDTNTY
QALVTIELDKQYAFPKDSSAKILTSGLLGEQYIGLEPGGDTEMLKPGDTITMTQSAIVLENLIGQFLYSKAADAGGGKPA
AAPGAAAH

Sequences:

>Translated_168_residues
MTMKKTALDFWVGLFVLVGFLALLFLALKVGNMSSLSFQPTYPVKMRFDNIGGLKPRAAVKSAGVVVGRVGTIGFDTNTY
QALVTIELDKQYAFPKDSSAKILTSGLLGEQYIGLEPGGDTEMLKPGDTITMTQSAIVLENLIGQFLYSKAADAGGGKPA
AAPGAAAH
>Mature_167_residues
TMKKTALDFWVGLFVLVGFLALLFLALKVGNMSSLSFQPTYPVKMRFDNIGGLKPRAAVKSAGVVVGRVGTIGFDTNTYQ
ALVTIELDKQYAFPKDSSAKILTSGLLGEQYIGLEPGGDTEMLKPGDTITMTQSAIVLENLIGQFLYSKAADAGGGKPAA
APGAAAH

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=171, Percent_Identity=49.7076023391813, Blast_Score=140, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 17691; Mature: 17560

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMKKTALDFWVGLFVLVGFLALLFLALKVGNMSSLSFQPTYPVKMRFDNIGGLKPRAAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHH
KSAGVVVGRVGTIGFDTNTYQALVTIELDKQYAFPKDSSAKILTSGLLGEQYIGLEPGGD
HHCCEEEECCEEEECCCCCEEEEEEEEECCCCCCCCCCCCHHHHHCCCCCCEECCCCCCC
TEMLKPGDTITMTQSAIVLENLIGQFLYSKAADAGGGKPAAAPGAAAH
CCEECCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TMKKTALDFWVGLFVLVGFLALLFLALKVGNMSSLSFQPTYPVKMRFDNIGGLKPRAAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHH
KSAGVVVGRVGTIGFDTNTYQALVTIELDKQYAFPKDSSAKILTSGLLGEQYIGLEPGGD
HHCCEEEECCEEEECCCCCEEEEEEEEECCCCCCCCCCCCHHHHHCCCCCCEECCCCCCC
TEMLKPGDTITMTQSAIVLENLIGQFLYSKAADAGGGKPAAAPGAAAH
CCEECCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]