| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is cirA [H]
Identifier: 238025550
GI number: 238025550
Start: 2787303
End: 2790059
Strand: Reverse
Name: cirA [H]
Synonym: bglu_2g22470
Alternate gene names: 238025550
Gene position: 2790059-2787303 (Counterclockwise)
Preceding gene: 238025551
Following gene: 238025549
Centisome position: 98.68
GC content: 66.38
Gene sequence:
>2757_bases ATGAAACAGAGAGTGTTGGCGACGGCCGTGAGGCAGATCGTCTGGGCGGAAATCGCATTGGCGGCCACGCTGGCCGCGCC GGCGTTCGCGCAAAGCCAGCCTGCCGCCGGCCCGGCGACGGTGGCCGATGCGGTGGCGAACGGCCCGGCCGTGACGGTGG CGCAGGCGGCCGCGCCGTCGAGCGTGGGCACGGCGAGCACGGCCGAGGCGCCCGCAGCGGCGCCGGGCACGGCGGCCACG GGACCGGACGGCAAGAAGGTGGCGCAGATCAAGCGCTTCGAGGTGACCGGCTCGCTGATTCGCAGCTCGGACAAGGTCGG CTTCAACCAGGTTCAGACGATCACGCAGAAGGACATCACCAGCAGCGGCGCGGTGACCGTGTCCGACTTCCTGCGCAACA CCACCGCCAACTCGGCCAACAGCTGGGGCGAAGGCCAGAGCAGCAGCTTCGCGGCCGGCGCGGCCGGCATCGCGCTGCGC GGCCTGCCGGAGAAGTACACGCTGGTGCTGGTGGACGGCCAGCGCGTGGCGCCGTTCGCGTTCTTCTCGAACGCGGACGA TTCGTTCTTCGATCTCAACACGATCCCGCTCAACGCGATCGAGCGCATCGAAATCGTCAAGACCGGCGCCGTGTCGCAAT ACGGCTCGGACGCGATCGGCGGCGTCGTCAACATCATCACCAAGCACGATTTCCGCGGCCTGCAGCTCGACGGCAGCCTC GGCAGCGCGATCAACGCCGGCAACGGCAACGGCACCACCAAGTTCGGCGTGCTCGGCGGCTTCGGCGACCTGAACGCCGA CCGCTTCAACATTACCGCTGCGGCCAGCTTCTACAAGTCCAACGGCTTCACGCTGGCCGATCGCGACTCCACGCGCAACA TGGACTACACCGGCAAGCCGGGCGGCCTGTCGCTGCTCGGGCCGTCGTACTGGAACTTGCCGGACGGCTCGACTCAGGCG CTGGGCGGCTGCACGCCGCGTCCGGCTGCCACCAATTCGCTCACGCAGGGCCTGCCGGGCACCATCTGCGGCATCAATAC CGCGCAGAGCATGTCGGTCCTGCCGATGACGGAGCGCCTGAACGCGAAGCTGCACGGCGACTTCAAGGTGGACGACAAGA CCACCGCGTTCGCCGATTTCATGATCAGCAGCATTTCGTCGACCTCGAACCAGGGCACCCACACGGTGGGCAACCCGCAG GGGCCGGCCCTGGTCTGGAACCCGGCCACGCAGCAGCTCACGCCGTTCAACACGGTAGTGCCCACCAGCAACCCGTACAA CACCACGGGCGTGCCGTCGGTGCTCACCTACACGTTTCCGGCCACGGTCGCCGAGAAGACCAACTCGACGTTCTGGCGTG CGTCCACCGGCGTCAAGGGTTCGTTTACGCTGCCCTATGGCGACTGGGACTGGTCGACCTCGCTCAGCCACTCGCAGAGC ACGGTCAGCAACTCGTTCTCGAACGCGCTCAACGTCAACCAGCTCACCAATATCTACCAGAACGGCGCGCTGAATTTCGC GAACCCGTCGGCCACGCCGGGCGCGTTCAACGGGCTGTATCAGGACGCCAGCACGTTCGGTATCTCGAAGCTCGATACGG TGGACGCGACGCTGTCCACGCCGAACCTGTTCCACCTGCCCACAGGTGACGTCGGCCTTGGCCTGGGCGCGCAGTTCACC CACCAGAGCGAATTCCTCGCGCCGGGCTCGGGCTACGTGGACGGCGCCGTGACCTCGCCGAACCTTCAGTCGGTGAACGG CCAGCGCAACGTCGCGGCGGTCTACTATCAGATCAACGTGCCGATCCTGAAGAACCTGACGTTCAGCCAGTCGGGCCGCT ACGACCACTACTCCGACGTCGGCGGCGCGTTCTCGCCGCGCTTCGCGCTGCGCTACCAGCCGGCCCAGCAGCTCACGCTG TACACCTCGTACAGCCGCGGCTTCCGCGCGCCGACCTTCGTCGAGGACAGCGCCTCGCGCACCATCGGCAGCCAGATCGA TCCGGCCACCGGCCTGAACTACACGTCGATCACGGTGGGCAACCCGAACATTGCGCCGGAGCACACGCGCAACCTGAACA TCGGCTTCCAGCTCTCGCCGAGCCGCTACACCGATTTCAGCCTCGACTGGTACAAGATCCGCGTGGACAACGTGATCGGC CAGGGCAGCCCGTCGAGCGTGGTGAGCGATCCGAACACCGGCGCGCTGCTGTACAAGGTGATCCCGTACCAGAACCTCGG CTACCTCGACACCAACGGCTTCGAGTCGACGTTCCGCCAGGCGGTGCCGCTCAAGGGCCTCGGCACCATCACGCTGTCGG GTGACTGGGCCTACGTGAAGAGCTTCAAGATCGGCACGCCGGGTGCGGCGCCGGTGGACGGCGCGGGCAACAACTACACG CTGACCCAGCCGTTCGGCGGCAGCTTCCCGCGCTGGCGCGGCAACACCACGCTGGACTGGAACTACCACCGCTGGGATGC CGCGCTGACCTGGCAGTTCACCGGCCCGTACGCGCAGAACCTGTCCGCGGCGCCGGCGCCGAGCAAGGTCGGCTCCTACA GCCAGTTCAACCTGATGGTGACCTACACGGGCTTCAAGAACTGGACGATCTACGGCGGCATCGACAACATCTTCAACCGC ACGCCGCCGTATGACCCGATCTTCGCGAACGGCACGATTAGCCAGAATGGCTATGACCAGTCGATCTACACCTACATCGG CCGCTTCGCCCAGATCGGCGCGACCTACAAGTTCTGA
Upstream 100 bases:
>100_bases ACGGGTGCCGGGACGCGATGCCGCGCAGGCGGTAAACGGATTTCACGAGATTCCGGGCGCGCGACGGGTGGGGGTCTATT TGTTCAGCGAGAGGGGCAAG
Downstream 100 bases:
>100_bases CGGTCCAGCCTGGGCCGCCGCGTTCGCCCCCGCTGCTGCGCGGGCCGGCGCGGCGGCCCGCCTCCCTCAACCCTTGACGA CGGCATGCCGGCCGCCCGGC
Product: outer membrane receptor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 918; Mature: 918
Protein sequence:
>918_residues MKQRVLATAVRQIVWAEIALAATLAAPAFAQSQPAAGPATVADAVANGPAVTVAQAAAPSSVGTASTAEAPAAAPGTAAT GPDGKKVAQIKRFEVTGSLIRSSDKVGFNQVQTITQKDITSSGAVTVSDFLRNTTANSANSWGEGQSSSFAAGAAGIALR GLPEKYTLVLVDGQRVAPFAFFSNADDSFFDLNTIPLNAIERIEIVKTGAVSQYGSDAIGGVVNIITKHDFRGLQLDGSL GSAINAGNGNGTTKFGVLGGFGDLNADRFNITAAASFYKSNGFTLADRDSTRNMDYTGKPGGLSLLGPSYWNLPDGSTQA LGGCTPRPAATNSLTQGLPGTICGINTAQSMSVLPMTERLNAKLHGDFKVDDKTTAFADFMISSISSTSNQGTHTVGNPQ GPALVWNPATQQLTPFNTVVPTSNPYNTTGVPSVLTYTFPATVAEKTNSTFWRASTGVKGSFTLPYGDWDWSTSLSHSQS TVSNSFSNALNVNQLTNIYQNGALNFANPSATPGAFNGLYQDASTFGISKLDTVDATLSTPNLFHLPTGDVGLGLGAQFT HQSEFLAPGSGYVDGAVTSPNLQSVNGQRNVAAVYYQINVPILKNLTFSQSGRYDHYSDVGGAFSPRFALRYQPAQQLTL YTSYSRGFRAPTFVEDSASRTIGSQIDPATGLNYTSITVGNPNIAPEHTRNLNIGFQLSPSRYTDFSLDWYKIRVDNVIG QGSPSSVVSDPNTGALLYKVIPYQNLGYLDTNGFESTFRQAVPLKGLGTITLSGDWAYVKSFKIGTPGAAPVDGAGNNYT LTQPFGGSFPRWRGNTTLDWNYHRWDAALTWQFTGPYAQNLSAAPAPSKVGSYSQFNLMVTYTGFKNWTIYGGIDNIFNR TPPYDPIFANGTISQNGYDQSIYTYIGRFAQIGATYKF
Sequences:
>Translated_918_residues MKQRVLATAVRQIVWAEIALAATLAAPAFAQSQPAAGPATVADAVANGPAVTVAQAAAPSSVGTASTAEAPAAAPGTAAT GPDGKKVAQIKRFEVTGSLIRSSDKVGFNQVQTITQKDITSSGAVTVSDFLRNTTANSANSWGEGQSSSFAAGAAGIALR GLPEKYTLVLVDGQRVAPFAFFSNADDSFFDLNTIPLNAIERIEIVKTGAVSQYGSDAIGGVVNIITKHDFRGLQLDGSL GSAINAGNGNGTTKFGVLGGFGDLNADRFNITAAASFYKSNGFTLADRDSTRNMDYTGKPGGLSLLGPSYWNLPDGSTQA LGGCTPRPAATNSLTQGLPGTICGINTAQSMSVLPMTERLNAKLHGDFKVDDKTTAFADFMISSISSTSNQGTHTVGNPQ GPALVWNPATQQLTPFNTVVPTSNPYNTTGVPSVLTYTFPATVAEKTNSTFWRASTGVKGSFTLPYGDWDWSTSLSHSQS TVSNSFSNALNVNQLTNIYQNGALNFANPSATPGAFNGLYQDASTFGISKLDTVDATLSTPNLFHLPTGDVGLGLGAQFT HQSEFLAPGSGYVDGAVTSPNLQSVNGQRNVAAVYYQINVPILKNLTFSQSGRYDHYSDVGGAFSPRFALRYQPAQQLTL YTSYSRGFRAPTFVEDSASRTIGSQIDPATGLNYTSITVGNPNIAPEHTRNLNIGFQLSPSRYTDFSLDWYKIRVDNVIG QGSPSSVVSDPNTGALLYKVIPYQNLGYLDTNGFESTFRQAVPLKGLGTITLSGDWAYVKSFKIGTPGAAPVDGAGNNYT LTQPFGGSFPRWRGNTTLDWNYHRWDAALTWQFTGPYAQNLSAAPAPSKVGSYSQFNLMVTYTGFKNWTIYGGIDNIFNR TPPYDPIFANGTISQNGYDQSIYTYIGRFAQIGATYKF >Mature_918_residues MKQRVLATAVRQIVWAEIALAATLAAPAFAQSQPAAGPATVADAVANGPAVTVAQAAAPSSVGTASTAEAPAAAPGTAAT GPDGKKVAQIKRFEVTGSLIRSSDKVGFNQVQTITQKDITSSGAVTVSDFLRNTTANSANSWGEGQSSSFAAGAAGIALR GLPEKYTLVLVDGQRVAPFAFFSNADDSFFDLNTIPLNAIERIEIVKTGAVSQYGSDAIGGVVNIITKHDFRGLQLDGSL GSAINAGNGNGTTKFGVLGGFGDLNADRFNITAAASFYKSNGFTLADRDSTRNMDYTGKPGGLSLLGPSYWNLPDGSTQA LGGCTPRPAATNSLTQGLPGTICGINTAQSMSVLPMTERLNAKLHGDFKVDDKTTAFADFMISSISSTSNQGTHTVGNPQ GPALVWNPATQQLTPFNTVVPTSNPYNTTGVPSVLTYTFPATVAEKTNSTFWRASTGVKGSFTLPYGDWDWSTSLSHSQS TVSNSFSNALNVNQLTNIYQNGALNFANPSATPGAFNGLYQDASTFGISKLDTVDATLSTPNLFHLPTGDVGLGLGAQFT HQSEFLAPGSGYVDGAVTSPNLQSVNGQRNVAAVYYQINVPILKNLTFSQSGRYDHYSDVGGAFSPRFALRYQPAQQLTL YTSYSRGFRAPTFVEDSASRTIGSQIDPATGLNYTSITVGNPNIAPEHTRNLNIGFQLSPSRYTDFSLDWYKIRVDNVIG QGSPSSVVSDPNTGALLYKVIPYQNLGYLDTNGFESTFRQAVPLKGLGTITLSGDWAYVKSFKIGTPGAAPVDGAGNNYT LTQPFGGSFPRWRGNTTLDWNYHRWDAALTWQFTGPYAQNLSAAPAPSKVGSYSQFNLMVTYTGFKNWTIYGGIDNIFNR TPPYDPIFANGTISQNGYDQSIYTYIGRFAQIGATYKF
Specific function: Not yet known. Postulated to participate in iron transport. Outer membrane receptor for colicins IA and IB [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=135, Percent_Identity=40, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1790405, Length=130, Percent_Identity=34.6153846153846, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 97312; Mature: 97312
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQRVLATAVRQIVWAEIALAATLAAPAFAQSQPAAGPATVADAVANGPAVTVAQAAAPS CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHCCCCEEEEEECCCCC SVGTASTAEAPAAAPGTAATGPDGKKVAQIKRFEVTGSLIRSSDKVGFNQVQTITQKDIT CCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEHHHHHHCCCCCCHHHHHHHHHHHCC SSGAVTVSDFLRNTTANSANSWGEGQSSSFAAGAAGIALRGLPEKYTLVLVDGQRVAPFA CCCCEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCEEE FFSNADDSFFDLNTIPLNAIERIEIVKTGAVSQYGSDAIGGVVNIITKHDFRGLQLDGSL EECCCCCCEEEECCCCCCCCCEEEEEECCCCHHCCCCHHHHHHEEEECCCCCCEEECCCC GSAINAGNGNGTTKFGVLGGFGDLNADRFNITAAASFYKSNGFTLADRDSTRNMDYTGKP CCEEECCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEHHCCCCEEECCCCCCCCCCCCCC GGLSLLGPSYWNLPDGSTQALGGCTPRPAATNSLTQGLPGTICGINTAQSMSVLPMTERL CCEEEECCCCCCCCCCCCHHCCCCCCCCCCCCHHHCCCCCEEECCCCCCCEEEEEEHHHC NAKLHGDFKVDDKTTAFADFMISSISSTSNQGTHTVGNPQGPALVWNPATQQLTPFNTVV CCEEECCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEC PTSNPYNTTGVPSVLTYTFPATVAEKTNSTFWRASTGVKGSFTLPYGDWDWSTSLSHSQS CCCCCCCCCCCCCEEEEECCCHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCHH TVSNSFSNALNVNQLTNIYQNGALNFANPSATPGAFNGLYQDASTFGISKLDTVDATLST HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCC PNLFHLPTGDVGLGLGAQFTHQSEFLAPGSGYVDGAVTSPNLQSVNGQRNVAAVYYQINV CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC PILKNLTFSQSGRYDHYSDVGGAFSPRFALRYQPAQQLTLYTSYSRGFRAPTFVEDSASR CCEECCCCCCCCCCCCHHCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCEECCCHHH TIGSQIDPATGLNYTSITVGNPNIAPEHTRNLNIGFQLSPSRYTDFSLDWYKIRVDNVIG HCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECEEC QGSPSSVVSDPNTGALLYKVIPYQNLGYLDTNGFESTFRQAVPLKGLGTITLSGDWAYVK CCCCCCCCCCCCCCEEEEEEECCCCCCCEECCCHHHHHHHHCCCCCCEEEEECCCEEEEE SFKIGTPGAAPVDGAGNNYTLTQPFGGSFPRWRGNTTLDWNYHRWDAALTWQFTGPYAQN EEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEECCEEEECEEEEEEECCCHHHC LSAAPAPSKVGSYSQFNLMVTYTGFKNWTIYGGIDNIFNRTPPYDPIFANGTISQNGYDQ CCCCCCCHHCCCCEEEEEEEEEECCCCEEEECCHHHHHCCCCCCCCEEECCEECCCCCCH SIYTYIGRFAQIGATYKF HHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKQRVLATAVRQIVWAEIALAATLAAPAFAQSQPAAGPATVADAVANGPAVTVAQAAAPS CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHCCCCEEEEEECCCCC SVGTASTAEAPAAAPGTAATGPDGKKVAQIKRFEVTGSLIRSSDKVGFNQVQTITQKDIT CCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEHHHHHHCCCCCCHHHHHHHHHHHCC SSGAVTVSDFLRNTTANSANSWGEGQSSSFAAGAAGIALRGLPEKYTLVLVDGQRVAPFA CCCCEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCEEE FFSNADDSFFDLNTIPLNAIERIEIVKTGAVSQYGSDAIGGVVNIITKHDFRGLQLDGSL EECCCCCCEEEECCCCCCCCCEEEEEECCCCHHCCCCHHHHHHEEEECCCCCCEEECCCC GSAINAGNGNGTTKFGVLGGFGDLNADRFNITAAASFYKSNGFTLADRDSTRNMDYTGKP CCEEECCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEHHCCCCEEECCCCCCCCCCCCCC GGLSLLGPSYWNLPDGSTQALGGCTPRPAATNSLTQGLPGTICGINTAQSMSVLPMTERL CCEEEECCCCCCCCCCCCHHCCCCCCCCCCCCHHHCCCCCEEECCCCCCCEEEEEEHHHC NAKLHGDFKVDDKTTAFADFMISSISSTSNQGTHTVGNPQGPALVWNPATQQLTPFNTVV CCEEECCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEC PTSNPYNTTGVPSVLTYTFPATVAEKTNSTFWRASTGVKGSFTLPYGDWDWSTSLSHSQS CCCCCCCCCCCCCEEEEECCCHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCHH TVSNSFSNALNVNQLTNIYQNGALNFANPSATPGAFNGLYQDASTFGISKLDTVDATLST HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCC PNLFHLPTGDVGLGLGAQFTHQSEFLAPGSGYVDGAVTSPNLQSVNGQRNVAAVYYQINV CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC PILKNLTFSQSGRYDHYSDVGGAFSPRFALRYQPAQQLTLYTSYSRGFRAPTFVEDSASR CCEECCCCCCCCCCCCHHCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCEECCCHHH TIGSQIDPATGLNYTSITVGNPNIAPEHTRNLNIGFQLSPSRYTDFSLDWYKIRVDNVIG HCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECEEC QGSPSSVVSDPNTGALLYKVIPYQNLGYLDTNGFESTFRQAVPLKGLGTITLSGDWAYVK CCCCCCCCCCCCCCEEEEEEECCCCCCCEECCCHHHHHHHHCCCCCCEEEEECCCEEEEE SFKIGTPGAAPVDGAGNNYTLTQPFGGSFPRWRGNTTLDWNYHRWDAALTWQFTGPYAQN EEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEECCEEEECEEEEEEECCCHHHC LSAAPAPSKVGSYSQFNLMVTYTGFKNWTIYGGIDNIFNRTPPYDPIFANGTISQNGYDQ CCCCCCCHHCCCCEEEEEEEEEECCCCEEEECCHHHHHCCCCCCCCEEECCEECCCCCCH SIYTYIGRFAQIGATYKF HHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2644220; 9278503; 3316180; 1315732; 2160948 [H]