| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238025492
Identifier: 238025492
GI number: 238025492
Start: 2713174
End: 2714652
Strand: Direct
Name: 238025492
Synonym: bglu_2g21870
Alternate gene names: NA
Gene position: 2713174-2714652 (Clockwise)
Preceding gene: 238025491
Following gene: 238025493
Centisome position: 95.96
GC content: 62.14
Gene sequence:
>1479_bases ATGCTTACGAACTTGCTTTCATTGAACTTTCAGGTGCCCTTTGTGGCCCACAAATTCGATGCGTCGAAGGCGATTCGCGG CCTGCGCGGTATGCCGCGCAGCGTGCTGCTGATCGGCCAGGCGAACCCGCCGATCGGCGTCGACATTAAGAAGCGCCAAC GCGTCACCAGCGAGGCCGAAGCGATCGGCCTGCTGGGTGAAGGCTCGATGCTGCTCGCAATGTGGCGTGCGGCAAAGGCA AACGCCGATCTTGGCATGCCGATCGATCTGGCGATCCTTGCTGACGATGCGACCGCACTGGCTGCCACGGGCAAGGTGAC GCTGCAGGTCGATGCGAATCACGCGTCCGGCGAAGTGTCGCTGTACATCGGCGGCAAACGCGTGCGGATCGGGATCGCGG TCAACGACACTGCGACGACTGCAGCCACGAAGCTCCTCAACGCAATCCAGGCGACACCGAGTCTTCCCGTTACTGCTGTC GCGGGCACCGCAGCCGGAGAAGTGAAGCTGACCTGCCGCTGGAAAGGCGCGACGGGCAACAGCATCGATCTGCGCAGCAC GTACTACGCGGATGATCGGCTGCCGCAGGGCGTGACGGTGACGATCACGTCGATGGCTGGCGGTGCCGTCAATCCCGACA TCACGCCGGTCATCTCGGCGATCAAAGGCTTTCGTGCGACCGAATACGCGATGCCGTACACCGACAGCGCGAACATGGGT GTGCTGGAGGCCGAGCTGGAACGGCGTTGGAACTTCGACAACATGCAGGATGGCCAGGCCGTGACGGTCATGCGCGGAAG CGAGGGGGAAGTTGTCGCCTGGCTCGGCCCCCGCAACAGTCCGGCGGTGCACACGATCTGCGTGACCCGTGACCTTACCA ATCCGTGGGAGACAGCCGCAATGGCCGCCGCCGCGATCGAGAGCCACGTGGCGATCGACCCGGCAGTCCCGTTCACGGGT GTGGCGCTGAGCGGCTATGTCGCAGCGCGCCTGGAAGACGACTGGGAAATCGACCAGCGCAACAACATGCTGACGGCGGG CGGCTCAGTGCTCGAGACGATGGAGGACGGCACCGCGCACATGCTGCGCGTGGTGACGAACTACACGACGCATCCGACCG GTGCCATAGACCCGTCGTGGCGAAACCTGAACTGGGTGAAAACGCTGTCGTATTACCGCTGGTTCACGGTGACGGAAATC CAGACCAAGTATCGCGGCTACAAGCTGGCCGAGTACGTCACCGAGCCGATTCCAGGCCAGAAGATCATGACCGTCCCGCT TGGCACCGACATCATGCTGAACAACTACGAGCAGTTTATGACGGCCGGCCTGTTCCAGAACATGGACCATTACAAGAAGA CGTTGCGAGTCGAAGTCGACGGGCCGAACGGCAAGCTGAAGATCCTCGACCAGCCGGTGCTCATCACGCAGCACTACCAA ACCGAGATCACCAGCGAGTTCATCGCAGGTCACGTTTGA
Upstream 100 bases:
>100_bases TTCTCCGGCTGCTCGAAGACGGCGATCTGATCCGCCAACGTCCCGAGTAACGGAAGGTCGCTTAAACCCGCTTCAAACCT CATTCACAGGGCAATAGAAG
Downstream 100 bases:
>100_bases TCGGCCCCGAAACACACACATTTCTCTGACTTTAATGGAGGGCTTAAATGGCCTGCGATAGCGAAATTTTCCGTGTGGAC AGCCTCACCGTGGACGGTGA
Product: bacteriophage Mu tail sheath protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 492; Mature: 492
Protein sequence:
>492_residues MLTNLLSLNFQVPFVAHKFDASKAIRGLRGMPRSVLLIGQANPPIGVDIKKRQRVTSEAEAIGLLGEGSMLLAMWRAAKA NADLGMPIDLAILADDATALAATGKVTLQVDANHASGEVSLYIGGKRVRIGIAVNDTATTAATKLLNAIQATPSLPVTAV AGTAAGEVKLTCRWKGATGNSIDLRSTYYADDRLPQGVTVTITSMAGGAVNPDITPVISAIKGFRATEYAMPYTDSANMG VLEAELERRWNFDNMQDGQAVTVMRGSEGEVVAWLGPRNSPAVHTICVTRDLTNPWETAAMAAAAIESHVAIDPAVPFTG VALSGYVAARLEDDWEIDQRNNMLTAGGSVLETMEDGTAHMLRVVTNYTTHPTGAIDPSWRNLNWVKTLSYYRWFTVTEI QTKYRGYKLAEYVTEPIPGQKIMTVPLGTDIMLNNYEQFMTAGLFQNMDHYKKTLRVEVDGPNGKLKILDQPVLITQHYQ TEITSEFIAGHV
Sequences:
>Translated_492_residues MLTNLLSLNFQVPFVAHKFDASKAIRGLRGMPRSVLLIGQANPPIGVDIKKRQRVTSEAEAIGLLGEGSMLLAMWRAAKA NADLGMPIDLAILADDATALAATGKVTLQVDANHASGEVSLYIGGKRVRIGIAVNDTATTAATKLLNAIQATPSLPVTAV AGTAAGEVKLTCRWKGATGNSIDLRSTYYADDRLPQGVTVTITSMAGGAVNPDITPVISAIKGFRATEYAMPYTDSANMG VLEAELERRWNFDNMQDGQAVTVMRGSEGEVVAWLGPRNSPAVHTICVTRDLTNPWETAAMAAAAIESHVAIDPAVPFTG VALSGYVAARLEDDWEIDQRNNMLTAGGSVLETMEDGTAHMLRVVTNYTTHPTGAIDPSWRNLNWVKTLSYYRWFTVTEI QTKYRGYKLAEYVTEPIPGQKIMTVPLGTDIMLNNYEQFMTAGLFQNMDHYKKTLRVEVDGPNGKLKILDQPVLITQHYQ TEITSEFIAGHV >Mature_492_residues MLTNLLSLNFQVPFVAHKFDASKAIRGLRGMPRSVLLIGQANPPIGVDIKKRQRVTSEAEAIGLLGEGSMLLAMWRAAKA NADLGMPIDLAILADDATALAATGKVTLQVDANHASGEVSLYIGGKRVRIGIAVNDTATTAATKLLNAIQATPSLPVTAV AGTAAGEVKLTCRWKGATGNSIDLRSTYYADDRLPQGVTVTITSMAGGAVNPDITPVISAIKGFRATEYAMPYTDSANMG VLEAELERRWNFDNMQDGQAVTVMRGSEGEVVAWLGPRNSPAVHTICVTRDLTNPWETAAMAAAAIESHVAIDPAVPFTG VALSGYVAARLEDDWEIDQRNNMLTAGGSVLETMEDGTAHMLRVVTNYTTHPTGAIDPSWRNLNWVKTLSYYRWFTVTEI QTKYRGYKLAEYVTEPIPGQKIMTVPLGTDIMLNNYEQFMTAGLFQNMDHYKKTLRVEVDGPNGKLKILDQPVLITQHYQ TEITSEFIAGHV
Specific function: Major component of the tail [H]
COG id: COG4386
COG function: function code R; Mu-like prophage tail sheath protein gpL
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To phage Mu protein L [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007067 [H]
Pfam domain/function: PF04984 Phage_sheath_1 [H]
EC number: NA
Molecular weight: Translated: 53327; Mature: 53327
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: PS00889 CNMP_BINDING_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTNLLSLNFQVPFVAHKFDASKAIRGLRGMPRSVLLIGQANPPIGVDIKKRQRVTSEAE CCCCEEEEEEECCEEEEECCHHHHHHHHCCCCCEEEEEECCCCCCCCEEHHHHHHHCHHH AIGLLGEGSMLLAMWRAAKANADLGMPIDLAILADDATALAATGKVTLQVDANHASGEVS HEEEECCCCCEEEEHHHHCCCCCCCCCEEEEEEECCCEEEEECCEEEEEEECCCCCCEEE LYIGGKRVRIGIAVNDTATTAATKLLNAIQATPSLPVTAVAGTAAGEVKLTCRWKGATGN EEECCEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCCCC SIDLRSTYYADDRLPQGVTVTITSMAGGAVNPDITPVISAIKGFRATEYAMPYTDSANMG EEEECEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCC VLEAELERRWNFDNMQDGQAVTVMRGSEGEVVAWLGPRNSPAVHTICVTRDLTNPWETAA EEEHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCHHHHH MAAAAIESHVAIDPAVPFTGVALSGYVAARLEDDWEIDQRNNMLTAGGSVLETMEDGTAH HHHHHHHHCEEECCCCCCCCEEECCEEEEEECCCCCCCCCCCEEECCCHHHHHHCCCHHH MLRVVTNYTTHPTGAIDPSWRNLNWVKTLSYYRWFTVTEIQTKYRGYKLAEYVTEPIPGQ HHHHHHCCCCCCCCCCCCCCCCCCHHEEEEEEEEEEEEEEHHHHCCEEHHHHHCCCCCCC KIMTVPLGTDIMLNNYEQFMTAGLFQNMDHYKKTLRVEVDGPNGKLKILDQPVLITQHYQ EEEEEECCCCEEECCHHHHHHHHHHHCHHHHCEEEEEEEECCCCEEEEECCCEEEEEHHH TEITSEFIAGHV HHHHHHHHCCCC >Mature Secondary Structure MLTNLLSLNFQVPFVAHKFDASKAIRGLRGMPRSVLLIGQANPPIGVDIKKRQRVTSEAE CCCCEEEEEEECCEEEEECCHHHHHHHHCCCCCEEEEEECCCCCCCCEEHHHHHHHCHHH AIGLLGEGSMLLAMWRAAKANADLGMPIDLAILADDATALAATGKVTLQVDANHASGEVS HEEEECCCCCEEEEHHHHCCCCCCCCCEEEEEEECCCEEEEECCEEEEEEECCCCCCEEE LYIGGKRVRIGIAVNDTATTAATKLLNAIQATPSLPVTAVAGTAAGEVKLTCRWKGATGN EEECCEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCCCC SIDLRSTYYADDRLPQGVTVTITSMAGGAVNPDITPVISAIKGFRATEYAMPYTDSANMG EEEECEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCC VLEAELERRWNFDNMQDGQAVTVMRGSEGEVVAWLGPRNSPAVHTICVTRDLTNPWETAA EEEHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCHHHHH MAAAAIESHVAIDPAVPFTGVALSGYVAARLEDDWEIDQRNNMLTAGGSVLETMEDGTAH HHHHHHHHCEEECCCCCCCCEEECCEEEEEECCCCCCCCCCCEEECCCHHHHHHCCCHHH MLRVVTNYTTHPTGAIDPSWRNLNWVKTLSYYRWFTVTEIQTKYRGYKLAEYVTEPIPGQ HHHHHHCCCCCCCCCCCCCCCCCCHHEEEEEEEEEEEEEEHHHHCCEEHHHHHCCCCCCC KIMTVPLGTDIMLNNYEQFMTAGLFQNMDHYKKTLRVEVDGPNGKLKILDQPVLITQHYQ EEEEEECCCCEEECCHHHHHHHHHHHCHHHHCEEEEEEEECCCCEEEEECCCEEEEEHHH TEITSEFIAGHV HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]