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The map label for this gene is dgdR [H]

Identifier: 238025076

GI number: 238025076

Start: 2171171

End: 2172022

Strand: Direct

Name: dgdR [H]

Synonym: bglu_2g17320

Alternate gene names: 238025076

Gene position: 2171171-2172022 (Clockwise)

Preceding gene: 238025074

Following gene: 238025077

Centisome position: 76.79

GC content: 73.0

Gene sequence:

>852_bases
ATGAAGGCACTGGACCTCGACGTGCTGGCCATGGTGGTGGCCGTGGCGGAAGCGGGCAGCTTCGTGCGCGGCGCGGCCCG
CGTGCATCGCTCCCAGTCGGCGCTGAGCATGCAGATCCGCGCGCTGGAGCAGTCGCTCGGCAAGTCGCTGTTCGTGCGCG
GCCCGCGCAGCGTGATGCCGACGCCCGACGGCGAGACGCTCGTGGCCTACGCCCGCCGCCTGCTGGCGCTGCGCGACGAG
GCCTGGGCCGCGATCGTGCATCCGGAGGTGAAGGGGCGCGTGACGATCGGCGTGCCCGACGAGTACGCGTCCTCGCTGCT
GCCGCCGGTGCTGCGCAAGTTCTCGGCACGCTATCCGAAGGTGGAGATCCAGGTGGTGTGCCTGCCGAGCCGGGCGCTCG
CGCCGCTCCTGAAGGACAACAAGATCGACCTGGCCTGCGTGACGCGCATGCGCGGGCTGAACGGCGCGTTCGTGCGCACC
GAGCCGATGGTCTGGGCCGGCCCGCCGTCGGGCGGCGCGGTGTGGGACGAGCGGCCCCTGCCGGTGGCGCTGTTCGGCAC
CGGCAGCGTGGCGCGCGCCAACGCGATCCGCGCGCTCGAGGCCGTCGGCATCGCGTCTCGCACCTCATACGAAAGCCCGA
GCCTGATGGGCCTCTTCAGCATGGTGGAGGCGGGGCTCGCGGTGGCGCCGCTGGCGCGCTGCGCGGTGCCTGCCCACTTC
TCGCAGCAGGGACCGGCGCACGGCCTGCCGCCGCTGCCCGATCTCGACATCGTGCTCGCGCGCAGCGCGCGCTCGAACCG
GCCGCCGTGCGACTTCCTGGCCGATCAGCTGCTGTCGGACCTGAGCCTCTGA

Upstream 100 bases:

>100_bases
GGGGGCTGTCCAGGAACTACCGGACCAACCAGTATGCGCGCCGGCCATCCATCAGACAAACGAGTTATATTGACGCTTTC
AATCAGTTTTTCTGATGATC

Downstream 100 bases:

>100_bases
CCGGGCGGCGGTCCCGCTCGCGGGCTAAGGGTCTCGCCCCAGGGCCGATGCTGCAGTGCAGCAACGTAAAACAGTGTGCC
GCATGCGCCACGAACTGTGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MKALDLDVLAMVVAVAEAGSFVRGAARVHRSQSALSMQIRALEQSLGKSLFVRGPRSVMPTPDGETLVAYARRLLALRDE
AWAAIVHPEVKGRVTIGVPDEYASSLLPPVLRKFSARYPKVEIQVVCLPSRALAPLLKDNKIDLACVTRMRGLNGAFVRT
EPMVWAGPPSGGAVWDERPLPVALFGTGSVARANAIRALEAVGIASRTSYESPSLMGLFSMVEAGLAVAPLARCAVPAHF
SQQGPAHGLPPLPDLDIVLARSARSNRPPCDFLADQLLSDLSL

Sequences:

>Translated_283_residues
MKALDLDVLAMVVAVAEAGSFVRGAARVHRSQSALSMQIRALEQSLGKSLFVRGPRSVMPTPDGETLVAYARRLLALRDE
AWAAIVHPEVKGRVTIGVPDEYASSLLPPVLRKFSARYPKVEIQVVCLPSRALAPLLKDNKIDLACVTRMRGLNGAFVRT
EPMVWAGPPSGGAVWDERPLPVALFGTGSVARANAIRALEAVGIASRTSYESPSLMGLFSMVEAGLAVAPLARCAVPAHF
SQQGPAHGLPPLPDLDIVLARSARSNRPPCDFLADQLLSDLSL
>Mature_283_residues
MKALDLDVLAMVVAVAEAGSFVRGAARVHRSQSALSMQIRALEQSLGKSLFVRGPRSVMPTPDGETLVAYARRLLALRDE
AWAAIVHPEVKGRVTIGVPDEYASSLLPPVLRKFSARYPKVEIQVVCLPSRALAPLLKDNKIDLACVTRMRGLNGAFVRT
EPMVWAGPPSGGAVWDERPLPVALFGTGSVARANAIRALEAVGIASRTSYESPSLMGLFSMVEAGLAVAPLARCAVPAHF
SQQGPAHGLPPLPDLDIVLARSARSNRPPCDFLADQLLSDLSL

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=265, Percent_Identity=33.2075471698113, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1787806, Length=245, Percent_Identity=28.9795918367347, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI157672245, Length=134, Percent_Identity=37.3134328358209, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787589, Length=123, Percent_Identity=37.3983739837398, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI2367136, Length=149, Percent_Identity=36.241610738255, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1790262, Length=145, Percent_Identity=31.0344827586207, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788297, Length=147, Percent_Identity=30.6122448979592, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790208, Length=125, Percent_Identity=37.6, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787879, Length=172, Percent_Identity=33.1395348837209, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790399, Length=263, Percent_Identity=27.3764258555133, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788887, Length=150, Percent_Identity=34, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30186; Mature: 30186

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALDLDVLAMVVAVAEAGSFVRGAARVHRSQSALSMQIRALEQSLGKSLFVRGPRSVMP
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC
TPDGETLVAYARRLLALRDEAWAAIVHPEVKGRVTIGVPDEYASSLLPPVLRKFSARYPK
CCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCC
VEIQVVCLPSRALAPLLKDNKIDLACVTRMRGLNGAFVRTEPMVWAGPPSGGAVWDERPL
EEEEEEEECCHHHHHHHCCCCCCHHHHHHHCCCCCCEEEECCEEEECCCCCCCCCCCCCC
PVALFGTGSVARANAIRALEAVGIASRTSYESPSLMGLFSMVEAGLAVAPLARCAVPAHF
CEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCC
SQQGPAHGLPPLPDLDIVLARSARSNRPPCDFLADQLLSDLSL
CCCCCCCCCCCCCCCHHEEECCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKALDLDVLAMVVAVAEAGSFVRGAARVHRSQSALSMQIRALEQSLGKSLFVRGPRSVMP
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC
TPDGETLVAYARRLLALRDEAWAAIVHPEVKGRVTIGVPDEYASSLLPPVLRKFSARYPK
CCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCC
VEIQVVCLPSRALAPLLKDNKIDLACVTRMRGLNGAFVRTEPMVWAGPPSGGAVWDERPL
EEEEEEEECCHHHHHHHCCCCCCHHHHHHHCCCCCCEEEECCEEEECCCCCCCCCCCCCC
PVALFGTGSVARANAIRALEAVGIASRTSYESPSLMGLFSMVEAGLAVAPLARCAVPAHF
CEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCC
SQQGPAHGLPPLPDLDIVLARSARSNRPPCDFLADQLLSDLSL
CCCCCCCCCCCCCCCHHEEECCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]