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The map label for this gene is cph2 [H]

Identifier: 238025077

GI number: 238025077

Start: 2172235

End: 2173764

Strand: Direct

Name: cph2 [H]

Synonym: bglu_2g17330

Alternate gene names: 238025077

Gene position: 2172235-2173764 (Clockwise)

Preceding gene: 238025076

Following gene: 238025078

Centisome position: 76.83

GC content: 69.22

Gene sequence:

>1530_bases
ATGCCCGATCGCCAGCCCGATTCGCCGCGTCTTCTTTCGAAGATGCATCCCGCGCGCCTGCTGACGCCGAACGGCGTCCT
GATCGCCGGCGCGCTGCTGCTGGCGTTCTTCTGGACCCTGAGCGCGCTCGTGCTCTACCAGTCGCGCTCGGACGCCTACC
AGCGCGCGCAGAGCAATGCACGCAACCTGGTGCTGGTGCTGGAACGCGACATCGCGCGCAGCATCGAGCAATACGACCTG
TCGCTGCAGGCCGTGACGGACGGCATGCGCCAGCCGCAGGTGATGGCGCTGCCGCCGCATCTGCGCAACCTCGTGCTGTT
CGATCGCGCCACCACCGGCCGCCATCTCGGCACCATTTACGTGGTCGACGCGCACGGCAACATCGTGCTCGATTCGCGCT
CCGACACGCCGCCGGCCGGCAACCTAGCGATGCGGGAGGACGTCGCGATCCATCGCGACCATCCCGGGCTTGGCCTTTAC
ATCAGCCGGCCGTTCGCCTCGCCGATGCACCGCGGCATGCCGATCATCACGCTCACGCGGCGCATCGACAACGCAGACGG
CTCGTTCGGCGGCGTGGTGGTGGGCGCGCTCAGCGTCGACTATTTCCGCTCGCTGCTCGACGGGCTGTCGGTCGGCCCGC
ACGGCTCGGCGTCGGTGATCGGCACCAACGGCGCGCTGATCACGCGGCTGCCGTTCGACCAGGCCATGGTGGGCCGCGAC
GTCAGCAACACCATCGTGTATCGCAACGCGATGGTCCATCCGTCGGGCTCGGTGGCCGGCTTCGCCAAGCTCGACGGCAC
CCGCCGGCTCTATGTGTTCCGGCGGCTGTCGACGCTGCCGATCATCGTCAACGTGGCGCCCGCCGAGGACGACATCTACC
TGGAATGGCGGCGCCGCGCCGGGTGGCTCGGCCTGATCGTGACGGTGTTCTCGGTCGTCGTGCTGGCCGGCGCGGTGCTG
CTGTCGCACGAGCTGCGCCTGCGCCAGAAGGCCGAGCAGCAGTTGCACCGGCTGGTGCGCACCGACGCGCTGACCGGGCT
CGGCAACCGTCGCGCGTTCGATGCCACGCTGCACAGCGAATGGTTGCGGGCGCAACGTACCGGCAAGCCGCTGTCGCTGC
TGTTCGTCGACATCGACCAGTTCAAGGCCTACAACGATCGCTACGGGCACCCGGCCGGCGACGAGGTGCTGCGCGAGGTG
GGCCGCGTGTTGACGCAATGCGTGCGGCGCCCGTCCGACAGCGTGGCGCGCTACGGCGGCGAGGAGTTCGTGGTGACGCT
GCCCGAAACCGACGCGGCCGGCGCCACCCACATCGGCGAGCACATGCGCGACTCGATCTACGAACTGGCGATCCCGCACT
CGACGAGCCGCCACGGCCGCGTCACCGTCAGCATCGGCGTCGTCACCTCGGGCGACACGCCGGTGGCGAGCGACCTCGCG
TTCGTGAGCCTCGCCGATACCGCGCTCTACCACGCGAAAACGGCGGGCCGCAACCGTATCTGCGATCCGCAAGGCGTCGT
GCTCGCCTGA

Upstream 100 bases:

>100_bases
GCCGGGCCGTTTTGCTCCGATAATTGATCCCGTCTGCACGCCGCCGCGGCACGCATGCCACGCGCCGCGACGTCGCCCGA
TCCGTTCCGCCAGCCACTCA

Downstream 100 bases:

>100_bases
GGGGCCGGCTTGCCGGCGATATGCCGGCACCCCGGGCGGCGGCCCGCGGATGGCGGGCCGGCCGACCGCGCCCGGTGCGA
GCGCGCCGTGCCGGCCGGCG

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 509; Mature: 508

Protein sequence:

>509_residues
MPDRQPDSPRLLSKMHPARLLTPNGVLIAGALLLAFFWTLSALVLYQSRSDAYQRAQSNARNLVLVLERDIARSIEQYDL
SLQAVTDGMRQPQVMALPPHLRNLVLFDRATTGRHLGTIYVVDAHGNIVLDSRSDTPPAGNLAMREDVAIHRDHPGLGLY
ISRPFASPMHRGMPIITLTRRIDNADGSFGGVVVGALSVDYFRSLLDGLSVGPHGSASVIGTNGALITRLPFDQAMVGRD
VSNTIVYRNAMVHPSGSVAGFAKLDGTRRLYVFRRLSTLPIIVNVAPAEDDIYLEWRRRAGWLGLIVTVFSVVVLAGAVL
LSHELRLRQKAEQQLHRLVRTDALTGLGNRRAFDATLHSEWLRAQRTGKPLSLLFVDIDQFKAYNDRYGHPAGDEVLREV
GRVLTQCVRRPSDSVARYGGEEFVVTLPETDAAGATHIGEHMRDSIYELAIPHSTSRHGRVTVSIGVVTSGDTPVASDLA
FVSLADTALYHAKTAGRNRICDPQGVVLA

Sequences:

>Translated_509_residues
MPDRQPDSPRLLSKMHPARLLTPNGVLIAGALLLAFFWTLSALVLYQSRSDAYQRAQSNARNLVLVLERDIARSIEQYDL
SLQAVTDGMRQPQVMALPPHLRNLVLFDRATTGRHLGTIYVVDAHGNIVLDSRSDTPPAGNLAMREDVAIHRDHPGLGLY
ISRPFASPMHRGMPIITLTRRIDNADGSFGGVVVGALSVDYFRSLLDGLSVGPHGSASVIGTNGALITRLPFDQAMVGRD
VSNTIVYRNAMVHPSGSVAGFAKLDGTRRLYVFRRLSTLPIIVNVAPAEDDIYLEWRRRAGWLGLIVTVFSVVVLAGAVL
LSHELRLRQKAEQQLHRLVRTDALTGLGNRRAFDATLHSEWLRAQRTGKPLSLLFVDIDQFKAYNDRYGHPAGDEVLREV
GRVLTQCVRRPSDSVARYGGEEFVVTLPETDAAGATHIGEHMRDSIYELAIPHSTSRHGRVTVSIGVVTSGDTPVASDLA
FVSLADTALYHAKTAGRNRICDPQGVVLA
>Mature_508_residues
PDRQPDSPRLLSKMHPARLLTPNGVLIAGALLLAFFWTLSALVLYQSRSDAYQRAQSNARNLVLVLERDIARSIEQYDLS
LQAVTDGMRQPQVMALPPHLRNLVLFDRATTGRHLGTIYVVDAHGNIVLDSRSDTPPAGNLAMREDVAIHRDHPGLGLYI
SRPFASPMHRGMPIITLTRRIDNADGSFGGVVVGALSVDYFRSLLDGLSVGPHGSASVIGTNGALITRLPFDQAMVGRDV
SNTIVYRNAMVHPSGSVAGFAKLDGTRRLYVFRRLSTLPIIVNVAPAEDDIYLEWRRRAGWLGLIVTVFSVVVLAGAVLL
SHELRLRQKAEQQLHRLVRTDALTGLGNRRAFDATLHSEWLRAQRTGKPLSLLFVDIDQFKAYNDRYGHPAGDEVLREVG
RVLTQCVRRPSDSVARYGGEEFVVTLPETDAAGATHIGEHMRDSIYELAIPHSTSRHGRVTVSIGVVTSGDTPVASDLAF
VSLADTALYHAKTAGRNRICDPQGVVLA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=174, Percent_Identity=37.3563218390805, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=38.4615384615385, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787262, Length=190, Percent_Identity=34.2105263157895, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1786584, Length=227, Percent_Identity=32.5991189427313, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87082007, Length=198, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=9e-21,
Organism=Escherichia coli, GI1788381, Length=190, Percent_Identity=33.1578947368421, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=36.4705882352941, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1788085, Length=174, Percent_Identity=36.7816091954023, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=31.0734463276836, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=34.7826086956522, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081977, Length=161, Percent_Identity=31.6770186335404, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788956, Length=173, Percent_Identity=31.7919075144509, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081974, Length=151, Percent_Identity=24.5033112582781, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 55753; Mature: 55621

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDRQPDSPRLLSKMHPARLLTPNGVLIAGALLLAFFWTLSALVLYQSRSDAYQRAQSNA
CCCCCCCCCHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC
RNLVLVLERDIARSIEQYDLSLQAVTDGMRQPQVMALPPHLRNLVLFDRATTGRHLGTIY
CCEEEEEEHHHHHHHHHHCCHHHHHHCCCCCCEEEECCHHHHCEEEEECCCCCCEEEEEE
VVDAHGNIVLDSRSDTPPAGNLAMREDVAIHRDHPGLGLYISRPFASPMHRGMPIITLTR
EEECCCCEEEECCCCCCCCCCCEECCCCEEECCCCCEEEEEECCCCCHHHCCCCEEEEEE
RIDNADGSFGGVVVGALSVDYFRSLLDGLSVGPHGSASVIGTNGALITRLPFDQAMVGRD
ECCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCHHHHCCC
VSNTIVYRNAMVHPSGSVAGFAKLDGTRRLYVFRRLSTLPIIVNVAPAEDDIYLEWRRRA
CCCEEEEEEEEECCCCCCCEEEECCCCEEEEEEEHHCCCEEEEEEECCCCCEEEEEHHCC
GWLGLIVTVFSVVVLAGAVLLSHELRLRQKAEQQLHRLVRTDALTGLGNRRAFDATLHSE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHH
WLRAQRTGKPLSLLFVDIDQFKAYNDRYGHPAGDEVLREVGRVLTQCVRRPSDSVARYGG
HHHHHHCCCCEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCC
EEFVVTLPETDAAGATHIGEHMRDSIYELAIPHSTSRHGRVTVSIGVVTSGDTPVASDLA
CEEEEECCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCEEEEEEEEEECCCCCCHHHHH
FVSLADTALYHAKTAGRNRICDPQGVVLA
HHHHHHHHHHHHHCCCCCCCCCCCCCEEC
>Mature Secondary Structure 
PDRQPDSPRLLSKMHPARLLTPNGVLIAGALLLAFFWTLSALVLYQSRSDAYQRAQSNA
CCCCCCCCHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC
RNLVLVLERDIARSIEQYDLSLQAVTDGMRQPQVMALPPHLRNLVLFDRATTGRHLGTIY
CCEEEEEEHHHHHHHHHHCCHHHHHHCCCCCCEEEECCHHHHCEEEEECCCCCCEEEEEE
VVDAHGNIVLDSRSDTPPAGNLAMREDVAIHRDHPGLGLYISRPFASPMHRGMPIITLTR
EEECCCCEEEECCCCCCCCCCCEECCCCEEECCCCCEEEEEECCCCCHHHCCCCEEEEEE
RIDNADGSFGGVVVGALSVDYFRSLLDGLSVGPHGSASVIGTNGALITRLPFDQAMVGRD
ECCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCHHHHCCC
VSNTIVYRNAMVHPSGSVAGFAKLDGTRRLYVFRRLSTLPIIVNVAPAEDDIYLEWRRRA
CCCEEEEEEEEECCCCCCCEEEECCCCEEEEEEEHHCCCEEEEEEECCCCCEEEEEHHCC
GWLGLIVTVFSVVVLAGAVLLSHELRLRQKAEQQLHRLVRTDALTGLGNRRAFDATLHSE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHH
WLRAQRTGKPLSLLFVDIDQFKAYNDRYGHPAGDEVLREVGRVLTQCVRRPSDSVARYGG
HHHHHHCCCCEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCC
EEFVVTLPETDAAGATHIGEHMRDSIYELAIPHSTSRHGRVTVSIGVVTSGDTPVASDLA
CEEEEECCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCEEEEEEEEEECCCCCCHHHHH
FVSLADTALYHAKTAGRNRICDPQGVVLA
HHHHHHHHHHHHHCCCCCCCCCCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]