| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024503
Identifier: 238024503
GI number: 238024503
Start: 1414882
End: 1416234
Strand: Direct
Name: 238024503
Synonym: bglu_2g11060
Alternate gene names: NA
Gene position: 1414882-1416234 (Clockwise)
Preceding gene: 238024487
Following gene: 238024504
Centisome position: 50.04
GC content: 64.6
Gene sequence:
>1353_bases ATGCGGATCGACAAACCGCTCTGGCATGAGGGCTTGGTCCTCACGCAGCAGCACTTTCAGCAGCAGGACCGATGGGCGGG ATTCGCGATGCAGCAGGTCGCGGCCGCTGCGCTCGCCGAACCATGGGGCACCCTAGGCGTCGAGGTCGACGAGGAGGCCC TGGCAACGGGGCGCCTCAAGCTCACGCGGCTCAAGCTGCGCTTCCCGGACGGGACGCCGGTCGACACGACGATGGCCGAT GAGGTTCCGCCAGCACGCGAACTGACACAAGGCATGCCTGCCGATTGTCAAAGCGTCGTGGTGCTCGCCGCGCTCGCGCT ACCGGATGCGAACGGCAACAACTGCCGCTTCGATGAAACCACGCTTGCGCGTCCGCGTCGCTCGTACCGCGAGTTCGTCA AGGTGACGGACCTGAACGGGACGGGTGAGTCGGAGATCGCCGCCGAGCGGCACGCCGTGCGGCTCCTGTTCGACTTCGAG TCCCATGCCGACGATACTGTCTGCGCGGTCGCACGGCTTACCCGCAGCACGAGCGGCCTGTTCCAGGTCGATCATCGGTT CGTGCCGCCATGCCTGACGCTCGGCAGCCATCGGCTTCACCTGGAGCGCGTCAATCGCCTCGCCGACATCCTGCAGGCGA AAAGTCTTGCGCTCGGCGCGCGCCGCAGCGAGCGCATCGAACAGGTGGCCGAATATGGCGTGGCTGACGTCCAGCTCTTT TGGCTGCTGCATTGCATTCATGCAGCATGGCCGCAACTGAGGCTATTTGCCACTCATCCGAACCGGCCGCCGGAGCATCT GTATGTCACGCTGGCACAGCTCGCCAGTGCGTTGATGACATTCTCGACGGGTGCCCAGCTGACCGACATTCCCGCGTACG ACCACGCACGTGCCGACGAGGTGTTCGCACAGCTCGAATCGATGATTCGTGATCTGCTCGACGCGATCATCCCTTCACGA GTGGTGTCGATCGGCCTGACCCGCAAGAGCCCTACGACGTGGAGCGGCCAGTTCCTCGACGAACGCATCGTCGGCGATGC AGCCGACTGGTATCTGTCCGTCAACGCACCGATGCCTGTGTTCGAGCTGGTCGAGCAGTTCCCGCGGCTGTGCAAGATCG GCGCGCCAGACGACGTCGAGCGCATCATCAACTCGGCGCTGCTGGGAATTCCGCTGAAGGCGGTGCAGCGCGTGCCGGCC GCGATTCCCGTGCGCCTTGACAACCAGTATTTCGCACTGGATTCGACCAGCGCTGCGCACGCGGAGATGCTCGCCGCGCG GGCCTGCCAGATCTATCTTCCCGCGTCCGTACCCGACGCCTCGCTTGAACTTTACGCGGTGCTGCGCTCATGA
Upstream 100 bases:
>100_bases GATAATTCGCATGAGAAAGCAAGAAAATTATCCAAATGGCGATTCCTTCATATAGGATCGCCGGGCCTAGATAGTCAACG AGAAGTCGCACACCACAGCT
Downstream 100 bases:
>100_bases ACACCCTGACGCCAGATCATAACGACGTCACCCCGATGGACGATCTGCCTGGCTCCAGCCGTGTGTCTGGCGCAGGTATG CGTGACTTGCTGCGCGATAC
Product: type VI secretion protein
Products: NA
Alternate protein names: Type VI Secretion Protein Family; Conserved Protein; Replication/Virulence Associated Protein; Type VI Secretion System Protein EvpM; Type VI Secretion System Protein ImpJ; Protein ImpJ/VasE; Type VI Secretion System Core Protein; T6ss M; Type VI Secretion Protein VasE
Number of amino acids: Translated: 450; Mature: 450
Protein sequence:
>450_residues MRIDKPLWHEGLVLTQQHFQQQDRWAGFAMQQVAAAALAEPWGTLGVEVDEEALATGRLKLTRLKLRFPDGTPVDTTMAD EVPPARELTQGMPADCQSVVVLAALALPDANGNNCRFDETTLARPRRSYREFVKVTDLNGTGESEIAAERHAVRLLFDFE SHADDTVCAVARLTRSTSGLFQVDHRFVPPCLTLGSHRLHLERVNRLADILQAKSLALGARRSERIEQVAEYGVADVQLF WLLHCIHAAWPQLRLFATHPNRPPEHLYVTLAQLASALMTFSTGAQLTDIPAYDHARADEVFAQLESMIRDLLDAIIPSR VVSIGLTRKSPTTWSGQFLDERIVGDAADWYLSVNAPMPVFELVEQFPRLCKIGAPDDVERIINSALLGIPLKAVQRVPA AIPVRLDNQYFALDSTSAAHAEMLAARACQIYLPASVPDASLELYAVLRS
Sequences:
>Translated_450_residues MRIDKPLWHEGLVLTQQHFQQQDRWAGFAMQQVAAAALAEPWGTLGVEVDEEALATGRLKLTRLKLRFPDGTPVDTTMAD EVPPARELTQGMPADCQSVVVLAALALPDANGNNCRFDETTLARPRRSYREFVKVTDLNGTGESEIAAERHAVRLLFDFE SHADDTVCAVARLTRSTSGLFQVDHRFVPPCLTLGSHRLHLERVNRLADILQAKSLALGARRSERIEQVAEYGVADVQLF WLLHCIHAAWPQLRLFATHPNRPPEHLYVTLAQLASALMTFSTGAQLTDIPAYDHARADEVFAQLESMIRDLLDAIIPSR VVSIGLTRKSPTTWSGQFLDERIVGDAADWYLSVNAPMPVFELVEQFPRLCKIGAPDDVERIINSALLGIPLKAVQRVPA AIPVRLDNQYFALDSTSAAHAEMLAARACQIYLPASVPDASLELYAVLRS >Mature_450_residues MRIDKPLWHEGLVLTQQHFQQQDRWAGFAMQQVAAAALAEPWGTLGVEVDEEALATGRLKLTRLKLRFPDGTPVDTTMAD EVPPARELTQGMPADCQSVVVLAALALPDANGNNCRFDETTLARPRRSYREFVKVTDLNGTGESEIAAERHAVRLLFDFE SHADDTVCAVARLTRSTSGLFQVDHRFVPPCLTLGSHRLHLERVNRLADILQAKSLALGARRSERIEQVAEYGVADVQLF WLLHCIHAAWPQLRLFATHPNRPPEHLYVTLAQLASALMTFSTGAQLTDIPAYDHARADEVFAQLESMIRDLLDAIIPSR VVSIGLTRKSPTTWSGQFLDERIVGDAADWYLSVNAPMPVFELVEQFPRLCKIGAPDDVERIINSALLGIPLKAVQRVPA AIPVRLDNQYFALDSTSAAHAEMLAARACQIYLPASVPDASLELYAVLRS
Specific function: Unknown
COG id: COG3522
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49835; Mature: 49835
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIDKPLWHEGLVLTQQHFQQQDRWAGFAMQQVAAAALAEPWGTLGVEVDEEALATGRLK CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHCCEE LTRLKLRFPDGTPVDTTMADEVPPARELTQGMPADCQSVVVLAALALPDANGNNCRFDET EEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH TLARPRRSYREFVKVTDLNGTGESEIAAERHAVRLLFDFESHADDTVCAVARLTRSTSGL HHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCC FQVDHRFVPPCLTLGSHRLHLERVNRLADILQAKSLALGARRSERIEQVAEYGVADVQLF EEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHH WLLHCIHAAWPQLRLFATHPNRPPEHLYVTLAQLASALMTFSTGAQLTDIPAYDHARADE HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHH VFAQLESMIRDLLDAIIPSRVVSIGLTRKSPTTWSGQFLDERIVGDAADWYLSVNAPMPV HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCH FELVEQFPRLCKIGAPDDVERIINSALLGIPLKAVQRVPAAIPVRLDNQYFALDSTSAAH HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCEEEEECCCCHHH AEMLAARACQIYLPASVPDASLELYAVLRS HHHHHHHHEEEEECCCCCCCCHHHHEEECC >Mature Secondary Structure MRIDKPLWHEGLVLTQQHFQQQDRWAGFAMQQVAAAALAEPWGTLGVEVDEEALATGRLK CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHCCEE LTRLKLRFPDGTPVDTTMADEVPPARELTQGMPADCQSVVVLAALALPDANGNNCRFDET EEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH TLARPRRSYREFVKVTDLNGTGESEIAAERHAVRLLFDFESHADDTVCAVARLTRSTSGL HHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCC FQVDHRFVPPCLTLGSHRLHLERVNRLADILQAKSLALGARRSERIEQVAEYGVADVQLF EEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHH WLLHCIHAAWPQLRLFATHPNRPPEHLYVTLAQLASALMTFSTGAQLTDIPAYDHARADE HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHH VFAQLESMIRDLLDAIIPSRVVSIGLTRKSPTTWSGQFLDERIVGDAADWYLSVNAPMPV HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCH FELVEQFPRLCKIGAPDDVERIINSALLGIPLKAVQRVPAAIPVRLDNQYFALDSTSAAH HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCEEEEECCCCHHH AEMLAARACQIYLPASVPDASLELYAVLRS HHHHHHHHEEEEECCCCCCCCHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA