| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024504
Identifier: 238024504
GI number: 238024504
Start: 1416231
End: 1416962
Strand: Direct
Name: 238024504
Synonym: bglu_2g11070
Alternate gene names: NA
Gene position: 1416231-1416962 (Clockwise)
Preceding gene: 238024503
Following gene: 238024505
Centisome position: 50.09
GC content: 62.7
Gene sequence:
>732_bases ATGAACACCCTGACGCCAGATCATAACGACGTCACCCCGATGGACGATCTGCCTGGCTCCAGCCGTGTGTCTGGCGCAGG TATGCGTGACTTGCTGCGCGATACGGGCCTTCTCGTGACGACACTTGCGCCTGGAGGCCGGGTTCAGGACGCTGCCGGGC TCCGGGAACGTTGCCGGCAGCTCATCACGAATTTTTCGGACGCGTTGGCGCGACGCGGCTATCCGGACGACGTCCGACAG GATGCACTTATCGCACAGTGTGGCCTGCTAGACGAGACCGCACTGCGCTATTTGCCGGCCGAAAGCCGCGCGGCCTGGCA ATTGAAGCCTTTACAGGTCGAACAGTTCAACCTGCATGATGCAGGCGAACGCGTAATCGAACGTCTGGAAGCGCGTATGC GCGAAGCCTCACCCAACCTCGACCTGCTCGAGTGTTACTCGGCGATCCTCGGCATGGGATTCGTGGGACGCTATGCCCGC GAAGGCGAAGCGAAGCGCACGGCGCTGGTCACATCACTGAACACCCAGTTGGAGACGCTTCGGCCTTCGTCGGCGCGGCC CTTCATGACCGACCGCGCGGGAAGACGGCTCTCCGACTGGTTCTACTGGCTTTCGCCGTGGGCAATAGCAGGTCTGGCCT GCGTCGTCGCGCTAATCGTCTGGATGGTCTGGGCAGCGGCGCTCGATGTGCAGATCGCGCATCTGCTGCCGGTAAAGGGT GGCCAGCCGTGA
Upstream 100 bases:
>100_bases GCGCTGCGCACGCGGAGATGCTCGCCGCGCGGGCCTGCCAGATCTATCTTCCCGCGTCCGTACCCGACGCCTCGCTTGAA CTTTACGCGGTGCTGCGCTC
Downstream 100 bases:
>100_bases AGCCCGACCTGCCGGTTCTGCCCGCCACGCCGGCGCGCGATCCTGATGACGGACACGAAGGGCTCGGTTATCCGTTTCGG ATGATGATCGTGTTCGCCGC
Product: type IV / VI secretion system protein, DotU family
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MNTLTPDHNDVTPMDDLPGSSRVSGAGMRDLLRDTGLLVTTLAPGGRVQDAAGLRERCRQLITNFSDALARRGYPDDVRQ DALIAQCGLLDETALRYLPAESRAAWQLKPLQVEQFNLHDAGERVIERLEARMREASPNLDLLECYSAILGMGFVGRYAR EGEAKRTALVTSLNTQLETLRPSSARPFMTDRAGRRLSDWFYWLSPWAIAGLACVVALIVWMVWAAALDVQIAHLLPVKG GQP
Sequences:
>Translated_243_residues MNTLTPDHNDVTPMDDLPGSSRVSGAGMRDLLRDTGLLVTTLAPGGRVQDAAGLRERCRQLITNFSDALARRGYPDDVRQ DALIAQCGLLDETALRYLPAESRAAWQLKPLQVEQFNLHDAGERVIERLEARMREASPNLDLLECYSAILGMGFVGRYAR EGEAKRTALVTSLNTQLETLRPSSARPFMTDRAGRRLSDWFYWLSPWAIAGLACVVALIVWMVWAAALDVQIAHLLPVKG GQP >Mature_243_residues MNTLTPDHNDVTPMDDLPGSSRVSGAGMRDLLRDTGLLVTTLAPGGRVQDAAGLRERCRQLITNFSDALARRGYPDDVRQ DALIAQCGLLDETALRYLPAESRAAWQLKPLQVEQFNLHDAGERVIERLEARMREASPNLDLLECYSAILGMGFVGRYAR EGEAKRTALVTSLNTQLETLRPSSARPFMTDRAGRRLSDWFYWLSPWAIAGLACVVALIVWMVWAAALDVQIAHLLPVKG GQP
Specific function: Unknown
COG id: COG3455
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26871; Mature: 26871
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTLTPDHNDVTPMDDLPGSSRVSGAGMRDLLRDTGLLVTTLAPGGRVQDAAGLRERCRQ CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHH LITNFSDALARRGYPDDVRQDALIAQCGLLDETALRYLPAESRAAWQLKPLQVEQFNLHD HHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEECCCCHHHCCCHH AGERVIERLEARMREASPNLDLLECYSAILGMGFVGRYAREGEAKRTALVTSLNTQLETL HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC RPSSARPFMTDRAGRRLSDWFYWLSPWAIAGLACVVALIVWMVWAAALDVQIAHLLPVKG CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GQP CCC >Mature Secondary Structure MNTLTPDHNDVTPMDDLPGSSRVSGAGMRDLLRDTGLLVTTLAPGGRVQDAAGLRERCRQ CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHH LITNFSDALARRGYPDDVRQDALIAQCGLLDETALRYLPAESRAAWQLKPLQVEQFNLHD HHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEECCCCHHHCCCHH AGERVIERLEARMREASPNLDLLECYSAILGMGFVGRYAREGEAKRTALVTSLNTQLETL HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC RPSSARPFMTDRAGRRLSDWFYWLSPWAIAGLACVVALIVWMVWAAALDVQIAHLLPVKG CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GQP CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA