| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
Click here to switch to the map view.
The map label for this gene is yacH [H]
Identifier: 238023891
GI number: 238023891
Start: 519350
End: 521089
Strand: Reverse
Name: yacH [H]
Synonym: bglu_2g04300
Alternate gene names: 238023891
Gene position: 521089-519350 (Counterclockwise)
Preceding gene: 238023892
Following gene: 238023890
Centisome position: 18.43
GC content: 70.57
Gene sequence:
>1740_bases ATGAAACCTACCCTGCCGCCTCGTCACCACTCCGTCCGCGCGCTCGTCGCGTCCTCGCTCGTGATCGCCCTGCTGGGCCT GGCCGCCTGCAACAAGAAGAGCGACGACACGCCGCCCGCTGCCAGCGAGGCCAGCGCCGCGAGCGCGCCGGCCGCCTCCG ACGCGCAGCCGGCGCCGGCGGCCTACACGCCGCCGAGCGCCGACCAGCTCTATCAGATGGTCGCGCCGATCGCGCTGTTC CCGGACAAGCTGGTGGCCCTGGTGCTGGCCGGCTCGACCTATCCCGACCAGATCACGGCCGCCAACACCTGGATCGGCCA GAATCCGACGCTCAAGGGCGCGGACCTGACCGCGGCCGCCGATGCGCAGTCCTGGGATCCGTCGGTCAAGGCACTGACCG CGTTCCCGGCCGTGCTCTCGCAGATGGCCGGCAATATCGCCTGGACCACCGCGCTCGGCCAAGCCTATTTCCATGATCCG AACGACGTGCTGAACGCAATCCAGGTGATGCGCCAGCGCGCGCAGAAGGCCGGGCACCTCAGCTCGGGCAGCAAGCTGCA CGTGACGCAAGTGACGCAGGCCGCGCCGCCGCCGTCCTACACGCCGGCGCCGAGCGGCCCGGCGATCTACGAAGGCCCGC CGATCGTACCGCCGCCGCCGCAGACCATCGTGATCGAACCGGCCCAGCCCGATACGGTCTACGTGCCCACCTACAACCCG GCCGTGGTGTACGGCGCGCCGGTGGTCTACCCCGGCTACGTCTACCGGCCGAGCTACGACACCGGCGCGGTGGTGACCGC CGGCGTGCTGTCGTTCGGCGTGGGCATCGCGGTCGGCGCGCTGTTCAGCCATCACGACTGGGGCTGGCATGCGTGGGGCG TCAACTGGGGCGCGCCGCATCCGGACGGCCCGGCCTGGGGCAACTGGCAGCGGCCGGCGGTGGTGTACAACCACACCACC TATATCTCGAAGTCGACCACCGTGATCAACAACGTCAACAATATCCATAACACCCGGATCACGAACAACGTCACCAACAA TTACGGCAATACCACCAACAACGTCGGCAACCTGATCAATCGCGGCGCGCCGCCGGCCGGCATGGCCGCCGCGCAGCAGA TGCGCGAGCAGCAGATGCGCGAGCAGCAGATGCGCGCGCAACAGATGCGCGAGCAGCAGGCCGCGCGTGCGAATCCGGGC GCGCCGCATCCGGTCCCGTCGGCGATGTCGATGCCGCATTTCGGCGCCAACGATGCGCGGCCCGGCGAGCGGCCCGGACT GCATCCGGGCGAGAGCCGCCCGAACCAGTTTGCCGCGCACACCGGCACGGGTGCCTCGCATCCCGGCGCCGAGATGCACG CCGGGCACAACGAGCCGGGCGCGCATGCGCCCGTGGCGGGCCGCGCCGAGGAAAGCGTGCCGCACCCGCCGGCCGAGGCA ACGCACGGCCAGAGCCACCAGAACGAGATGCGCGAGATGTCCGGCATGCAGCCGCATCAGCAGGCCGAGACGCGGCACGC GCCCGAGGCCGAAGCGTCGCGTCCGCAGCACGAGGCACCGCCCCAGCAGCACCAGGCCTTCCCGCAGCAGCAGCAGCAGC ACGAGGCCGAGGCGCACCGCGAGGCACCGCAGTCCCATCCGGCCGAACATGGGCAACATGCGCCGCAAGCGCATCCCCAG TCGCATCCTCAGCATTCGGCGCCGCATCCGCAGCAGCACGAACGGCGCGAGCATCGCTGA
Upstream 100 bases:
>100_bases GCGAAGCTGATCGAGCGAAGCCTGTCGAATCGTGCCGGTTCCACATCGCTCCGCCGACGCCAGCCCTGAGCCCCTCCTGA TGAACGACACGCACCAGATC
Downstream 100 bases:
>100_bases CGCGCAGCCGGGCCGGCGTCGACGCAACCAGGGCCGGCCTCGCCCGGCCCTGGTTGCGATATCCGCGCGGCCCCTTCCTG CCGCCGCGCCGGTTCGCGTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 579; Mature: 579
Protein sequence:
>579_residues MKPTLPPRHHSVRALVASSLVIALLGLAACNKKSDDTPPAASEASAASAPAASDAQPAPAAYTPPSADQLYQMVAPIALF PDKLVALVLAGSTYPDQITAANTWIGQNPTLKGADLTAAADAQSWDPSVKALTAFPAVLSQMAGNIAWTTALGQAYFHDP NDVLNAIQVMRQRAQKAGHLSSGSKLHVTQVTQAAPPPSYTPAPSGPAIYEGPPIVPPPPQTIVIEPAQPDTVYVPTYNP AVVYGAPVVYPGYVYRPSYDTGAVVTAGVLSFGVGIAVGALFSHHDWGWHAWGVNWGAPHPDGPAWGNWQRPAVVYNHTT YISKSTTVINNVNNIHNTRITNNVTNNYGNTTNNVGNLINRGAPPAGMAAAQQMREQQMREQQMRAQQMREQQAARANPG APHPVPSAMSMPHFGANDARPGERPGLHPGESRPNQFAAHTGTGASHPGAEMHAGHNEPGAHAPVAGRAEESVPHPPAEA THGQSHQNEMREMSGMQPHQQAETRHAPEAEASRPQHEAPPQQHQAFPQQQQQHEAEAHREAPQSHPAEHGQHAPQAHPQ SHPQHSAPHPQQHERREHR
Sequences:
>Translated_579_residues MKPTLPPRHHSVRALVASSLVIALLGLAACNKKSDDTPPAASEASAASAPAASDAQPAPAAYTPPSADQLYQMVAPIALF PDKLVALVLAGSTYPDQITAANTWIGQNPTLKGADLTAAADAQSWDPSVKALTAFPAVLSQMAGNIAWTTALGQAYFHDP NDVLNAIQVMRQRAQKAGHLSSGSKLHVTQVTQAAPPPSYTPAPSGPAIYEGPPIVPPPPQTIVIEPAQPDTVYVPTYNP AVVYGAPVVYPGYVYRPSYDTGAVVTAGVLSFGVGIAVGALFSHHDWGWHAWGVNWGAPHPDGPAWGNWQRPAVVYNHTT YISKSTTVINNVNNIHNTRITNNVTNNYGNTTNNVGNLINRGAPPAGMAAAQQMREQQMREQQMRAQQMREQQAARANPG APHPVPSAMSMPHFGANDARPGERPGLHPGESRPNQFAAHTGTGASHPGAEMHAGHNEPGAHAPVAGRAEESVPHPPAEA THGQSHQNEMREMSGMQPHQQAETRHAPEAEASRPQHEAPPQQHQAFPQQQQQHEAEAHREAPQSHPAEHGQHAPQAHPQ SHPQHSAPHPQQHERREHR >Mature_579_residues MKPTLPPRHHSVRALVASSLVIALLGLAACNKKSDDTPPAASEASAASAPAASDAQPAPAAYTPPSADQLYQMVAPIALF PDKLVALVLAGSTYPDQITAANTWIGQNPTLKGADLTAAADAQSWDPSVKALTAFPAVLSQMAGNIAWTTALGQAYFHDP NDVLNAIQVMRQRAQKAGHLSSGSKLHVTQVTQAAPPPSYTPAPSGPAIYEGPPIVPPPPQTIVIEPAQPDTVYVPTYNP AVVYGAPVVYPGYVYRPSYDTGAVVTAGVLSFGVGIAVGALFSHHDWGWHAWGVNWGAPHPDGPAWGNWQRPAVVYNHTT YISKSTTVINNVNNIHNTRITNNVTNNYGNTTNNVGNLINRGAPPAGMAAAQQMREQQMREQQMRAQQMREQQAARANPG APHPVPSAMSMPHFGANDARPGERPGLHPGESRPNQFAAHTGTGASHPGAEMHAGHNEPGAHAPVAGRAEESVPHPPAEA THGQSHQNEMREMSGMQPHQQAETRHAPEAEASRPQHEAPPQQHQAFPQQQQQHEAEAHREAPQSHPAEHGQHAPQAHPQ SHPQHSAPHPQQHERREHR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786308, Length=300, Percent_Identity=37.3333333333333, Blast_Score=165, Evalue=9e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021728 [H]
Pfam domain/function: PF11737 DUF3300 [H]
EC number: NA
Molecular weight: Translated: 61785; Mature: 61785
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPTLPPRHHSVRALVASSLVIALLGLAACNKKSDDTPPAASEASAASAPAASDAQPAPA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCC AYTPPSADQLYQMVAPIALFPDKLVALVLAGSTYPDQITAANTWIGQNPTLKGADLTAAA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCEECC DAQSWDPSVKALTAFPAVLSQMAGNIAWTTALGQAYFHDPNDVLNAIQVMRQRAQKAGHL CCCCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC SSGSKLHVTQVTQAAPPPSYTPAPSGPAIYEGPPIVPPPPQTIVIEPAQPDTVYVPTYNP CCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCC AVVYGAPVVYPGYVYRPSYDTGAVVTAGVLSFGVGIAVGALFSHHDWGWHAWGVNWGAPH EEEECCCEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC PDGPAWGNWQRPAVVYNHTTYISKSTTVINNVNNIHNTRITNNVTNNYGNTTNNVGNLIN CCCCCCCCCCCCEEEEECEEEECCCHHHHHCCHHHCCCHHCCCCCCCCCCCCHHHHHHHH RGAPPAGMAAAQQMREQQMREQQMRAQQMREQQAARANPGAPHPVPSAMSMPHFGANDAR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC PGERPGLHPGESRPNQFAAHTGTGASHPGAEMHAGHNEPGAHAPVAGRAEESVPHPPAEA CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC THGQSHQNEMREMSGMQPHQQAETRHAPEAEASRPQHEAPPQQHQAFPQQQQQHEAEAHR CCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHH EAPQSHPAEHGQHAPQAHPQSHPQHSAPHPQQHERREHR HCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCC >Mature Secondary Structure MKPTLPPRHHSVRALVASSLVIALLGLAACNKKSDDTPPAASEASAASAPAASDAQPAPA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCC AYTPPSADQLYQMVAPIALFPDKLVALVLAGSTYPDQITAANTWIGQNPTLKGADLTAAA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCEECC DAQSWDPSVKALTAFPAVLSQMAGNIAWTTALGQAYFHDPNDVLNAIQVMRQRAQKAGHL CCCCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC SSGSKLHVTQVTQAAPPPSYTPAPSGPAIYEGPPIVPPPPQTIVIEPAQPDTVYVPTYNP CCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCC AVVYGAPVVYPGYVYRPSYDTGAVVTAGVLSFGVGIAVGALFSHHDWGWHAWGVNWGAPH EEEECCCEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC PDGPAWGNWQRPAVVYNHTTYISKSTTVINNVNNIHNTRITNNVTNNYGNTTNNVGNLIN CCCCCCCCCCCCEEEEECEEEECCCHHHHHCCHHHCCCHHCCCCCCCCCCCCHHHHHHHH RGAPPAGMAAAQQMREQQMREQQMRAQQMREQQAARANPGAPHPVPSAMSMPHFGANDAR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC PGERPGLHPGESRPNQFAAHTGTGASHPGAEMHAGHNEPGAHAPVAGRAEESVPHPPAEA CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC THGQSHQNEMREMSGMQPHQQAETRHAPEAEASRPQHEAPPQQHQAFPQQQQQHEAEAHR CCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHH EAPQSHPAEHGQHAPQAHPQSHPQHSAPHPQQHERREHR HCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8202364; 9278503 [H]