| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
Click here to switch to the map view.
The map label for this gene is tar [H]
Identifier: 238023889
GI number: 238023889
Start: 515006
End: 516814
Strand: Direct
Name: tar [H]
Synonym: bglu_2g04280
Alternate gene names: 238023889
Gene position: 515006-516814 (Clockwise)
Preceding gene: 238023888
Following gene: 238023910
Centisome position: 18.22
GC content: 66.39
Gene sequence:
>1809_bases ATGTTCTCATCGATACGCGCGCGGATTCTTGCAACCTGCGTCGGCATAGTCGCGACCGCGCTGATTGCCACCGGGGGCAT CATCTATTACGTCGTCGAGCAACACAACGACGAGATGATCAACAGCAATCTGAAGTCGACGCTCGCCGGCCAGACGCTGG CCATCAACCAGTGGATCGCAAGCTGCGCCAAGCAGGTGGCCGTGCTGGCGGATTCGGCGCCGCTTGGCTCGAGCGCTGAG GTGCTCCCGTCGCTGCGGCTGGTCATGCAGTCCGGCGGCTTCGTCGCCGTGACGCTGGGCCTGGCCGACAAGACGGCCTA TTCGCCCACGCCGCTGCCGGCCGGCTACGATCCGACGGCGCGGCCATGGTACAAGCAGGCGGCCGCATCCGGCCACGCGC TCGTCACGAGCGTCTACCGCGATGCCGCGACGGGCAAGCCCACCTTCTCGTTCGTCTCCCCGGTCATGCGCGACGGCACC ATGAAAGGCGCCATCGCCGCCGGGATGCTGCTCGAAAAGGTAAGCGGCATCGTCGCCGCGATTCGTCCCACGCCGTCGAG CCTCGCGTTCCTGGTCAACCAGAAAGGCGATTTGCTCGCGCTCGGCAATACCGCGCTCATCATGAAGCCGGCGTCCGATC TGTCGGCCGACCTCACGCCCGCGCTGCTCGAGGCGCTGAAGACGGCCGACCGGCCCCTGGAAATCAAGATCGACGGCGCG GACAAATTGCTGCGATCCGAGCCGATCGACGGCACGGACTGGCATCTGGTGCTGGCGCTCGACAAGGCCGACGTGACAGC GGGGATACGCGCCGTGGCCACGACCACGCTGGTATGCGTGATCGTCGTGGCATTGCTCGCCGCCCTGGTGATCGGGGCGC TCACGACCACGGCGTTCCGCCGCATACTGCTCGTGCGTGACGCACTCAACGATGTCAGCAGCGGCAGCGGCGACCTCTCG CGGCGCCTGCCCGCCGAAGGTGGCGACGAAGCCGCGCAGATCGCGCGCGCGTTCAACCTGTTCACGGCGAAGATCAGTGA AACCTTGCTGAAGATCCGCGAAAGCAGCGAATCGGTGCGTCTGGCCAGCTCGGAGATCGCGCAAGGAAACCAGGATTTGT CCGGCCGCACCGAACTCACCGCCTCCAGCCTGCAGGAAACCGCGGCGGCGCTCGAGGAGATCGCCGGCACGGCGCGCAAT TCCGCCGACGCGGTCACGCAGATGAGCCAGCTCGCCGAGAAGGCGTCGAGCGTTGCGATCCGCGGCGGCGACACGGTGCG GGAGGTGGTGACCACCATGCACCAAATCACCCAGGCCTCGGCGGAAATCTCGGACATCATCGGCGTGATCGACGGCATCG CGTTCCAGACCAACATCCTCGCGCTCAATGCCGCCGTGGAGGCGGCACGCGCGAGCGAGCACGGCCGCGGTTTCGCCGTG GTGGCTGGCGAAGTGCGCGCGCTGGCCCAGCGCAGCGCACAGGCGGCGCGCGAAATCAAAGCGCTGATCGAATCGTCGGT GTCGAAAATCGAACAGGGCTCGCAGCTGGTGCAGACCGCGGGCTTGACGATGGACGAAATCGTCGGAGGCGTGCGCGGCA TCACCAATGCCATCGGCGAGATCGGCGTGGGGGCTCACGAGCAGAGCACGGGCCTGGAGCAAGTGAATCAGGCGCTGTCA CAGCTCGATCATTCGACCCAGCAAAATGCCGCGCTGGTGGAGCAATCGGCGGCCTCGGCGGTGCTGTTGCGCGAGCAGGC CGAAAAGCTCGCCGACGCGGTGGGCGAATTCAAGCTCGCGACTGCGTAA
Upstream 100 bases:
>100_bases GCAGATGGGGCGCAAGTTTTCGTCGCGCCTGCCGATATCCTGCTATGAAACGCTGAATGTTACAAATCTATTACGTTACC AATAATAAGGATATCGTAGG
Downstream 100 bases:
>100_bases GGCCGCGGCGGCGGGAGGTCCGGCGCAGGCGGGGCGACAACGCCGCCGGAGCCGGGCCGGTCATGGCGCCGCCGCGTGCC AGGCCGGCCGGCGGCGGACG
Product: methyl-accepting chemotaxis sensory transducer
Products: NA
Alternate protein names: MCP-II; Aspartate chemoreceptor protein [H]
Number of amino acids: Translated: 602; Mature: 602
Protein sequence:
>602_residues MFSSIRARILATCVGIVATALIATGGIIYYVVEQHNDEMINSNLKSTLAGQTLAINQWIASCAKQVAVLADSAPLGSSAE VLPSLRLVMQSGGFVAVTLGLADKTAYSPTPLPAGYDPTARPWYKQAAASGHALVTSVYRDAATGKPTFSFVSPVMRDGT MKGAIAAGMLLEKVSGIVAAIRPTPSSLAFLVNQKGDLLALGNTALIMKPASDLSADLTPALLEALKTADRPLEIKIDGA DKLLRSEPIDGTDWHLVLALDKADVTAGIRAVATTTLVCVIVVALLAALVIGALTTTAFRRILLVRDALNDVSSGSGDLS RRLPAEGGDEAAQIARAFNLFTAKISETLLKIRESSESVRLASSEIAQGNQDLSGRTELTASSLQETAAALEEIAGTARN SADAVTQMSQLAEKASSVAIRGGDTVREVVTTMHQITQASAEISDIIGVIDGIAFQTNILALNAAVEAARASEHGRGFAV VAGEVRALAQRSAQAAREIKALIESSVSKIEQGSQLVQTAGLTMDEIVGGVRGITNAIGEIGVGAHEQSTGLEQVNQALS QLDHSTQQNAALVEQSAASAVLLREQAEKLADAVGEFKLATA
Sequences:
>Translated_602_residues MFSSIRARILATCVGIVATALIATGGIIYYVVEQHNDEMINSNLKSTLAGQTLAINQWIASCAKQVAVLADSAPLGSSAE VLPSLRLVMQSGGFVAVTLGLADKTAYSPTPLPAGYDPTARPWYKQAAASGHALVTSVYRDAATGKPTFSFVSPVMRDGT MKGAIAAGMLLEKVSGIVAAIRPTPSSLAFLVNQKGDLLALGNTALIMKPASDLSADLTPALLEALKTADRPLEIKIDGA DKLLRSEPIDGTDWHLVLALDKADVTAGIRAVATTTLVCVIVVALLAALVIGALTTTAFRRILLVRDALNDVSSGSGDLS RRLPAEGGDEAAQIARAFNLFTAKISETLLKIRESSESVRLASSEIAQGNQDLSGRTELTASSLQETAAALEEIAGTARN SADAVTQMSQLAEKASSVAIRGGDTVREVVTTMHQITQASAEISDIIGVIDGIAFQTNILALNAAVEAARASEHGRGFAV VAGEVRALAQRSAQAAREIKALIESSVSKIEQGSQLVQTAGLTMDEIVGGVRGITNAIGEIGVGAHEQSTGLEQVNQALS QLDHSTQQNAALVEQSAASAVLLREQAEKLADAVGEFKLATA >Mature_602_residues MFSSIRARILATCVGIVATALIATGGIIYYVVEQHNDEMINSNLKSTLAGQTLAINQWIASCAKQVAVLADSAPLGSSAE VLPSLRLVMQSGGFVAVTLGLADKTAYSPTPLPAGYDPTARPWYKQAAASGHALVTSVYRDAATGKPTFSFVSPVMRDGT MKGAIAAGMLLEKVSGIVAAIRPTPSSLAFLVNQKGDLLALGNTALIMKPASDLSADLTPALLEALKTADRPLEIKIDGA DKLLRSEPIDGTDWHLVLALDKADVTAGIRAVATTTLVCVIVVALLAALVIGALTTTAFRRILLVRDALNDVSSGSGDLS RRLPAEGGDEAAQIARAFNLFTAKISETLLKIRESSESVRLASSEIAQGNQDLSGRTELTASSLQETAAALEEIAGTARN SADAVTQMSQLAEKASSVAIRGGDTVREVVTTMHQITQASAEISDIIGVIDGIAFQTNILALNAAVEAARASEHGRGFAV VAGEVRALAQRSAQAAREIKALIESSVSKIEQGSQLVQTAGLTMDEIVGGVRGITNAIGEIGVGAHEQSTGLEQVNQALS QLDHSTQQNAALVEQSAASAVLLREQAEKLADAVGEFKLATA
Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of
COG id: COG0840
COG function: function code NT; Methyl-accepting chemotaxis protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1788195, Length=284, Percent_Identity=53.8732394366197, Blast_Score=263, Evalue=3e-71, Organism=Escherichia coli, GI2367378, Length=324, Percent_Identity=49.3827160493827, Blast_Score=249, Evalue=3e-67, Organism=Escherichia coli, GI1787690, Length=322, Percent_Identity=46.2732919254658, Blast_Score=244, Evalue=1e-65, Organism=Escherichia coli, GI1788194, Length=287, Percent_Identity=48.780487804878, Blast_Score=243, Evalue=3e-65, Organism=Escherichia coli, GI1789453, Length=237, Percent_Identity=43.4599156118143, Blast_Score=188, Evalue=1e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR003122 - InterPro: IPR004091 - InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]
EC number: NA
Molecular weight: Translated: 62490; Mature: 62490
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSSIRARILATCVGIVATALIATGGIIYYVVEQHNDEMINSNLKSTLAGQTLAINQWIA CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHH SCAKQVAVLADSAPLGSSAEVLPSLRLVMQSGGFVAVTLGLADKTAYSPTPLPAGYDPTA HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCC RPWYKQAAASGHALVTSVYRDAATGKPTFSFVSPVMRDGTMKGAIAAGMLLEKVSGIVAA CHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEE IRPTPSSLAFLVNQKGDLLALGNTALIMKPASDLSADLTPALLEALKTADRPLEIKIDGA ECCCCHHHEEEECCCCCEEEECCEEEEEECCHHCCCCCCHHHHHHHHHCCCCEEEEECCH DKLLRSEPIDGTDWHLVLALDKADVTAGIRAVATTTLVCVIVVALLAALVIGALTTTAFR HHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RILLVRDALNDVSSGSGDLSRRLPAEGGDEAAQIARAFNLFTAKISETLLKIRESSESVR HHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH LASSEIAQGNQDLSGRTELTASSLQETAAALEEIAGTARNSADAVTQMSQLAEKASSVAI HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCEEE RGGDTVREVVTTMHQITQASAEISDIIGVIDGIAFQTNILALNAAVEAARASEHGRGFAV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCEEEE VAGEVRALAQRSAQAAREIKALIESSVSKIEQGSQLVQTAGLTMDEIVGGVRGITNAIGE EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH IGVGAHEQSTGLEQVNQALSQLDHSTQQNAALVEQSAASAVLLREQAEKLADAVGEFKLA CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEC TA CC >Mature Secondary Structure MFSSIRARILATCVGIVATALIATGGIIYYVVEQHNDEMINSNLKSTLAGQTLAINQWIA CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHH SCAKQVAVLADSAPLGSSAEVLPSLRLVMQSGGFVAVTLGLADKTAYSPTPLPAGYDPTA HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCC RPWYKQAAASGHALVTSVYRDAATGKPTFSFVSPVMRDGTMKGAIAAGMLLEKVSGIVAA CHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEE IRPTPSSLAFLVNQKGDLLALGNTALIMKPASDLSADLTPALLEALKTADRPLEIKIDGA ECCCCHHHEEEECCCCCEEEECCEEEEEECCHHCCCCCCHHHHHHHHHCCCCEEEEECCH DKLLRSEPIDGTDWHLVLALDKADVTAGIRAVATTTLVCVIVVALLAALVIGALTTTAFR HHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RILLVRDALNDVSSGSGDLSRRLPAEGGDEAAQIARAFNLFTAKISETLLKIRESSESVR HHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH LASSEIAQGNQDLSGRTELTASSLQETAAALEEIAGTARNSADAVTQMSQLAEKASSVAI HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCEEE RGGDTVREVVTTMHQITQASAEISDIIGVIDGIAFQTNILALNAAVEAARASEHGRGFAV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCEEEE VAGEVRALAQRSAQAAREIKALIESSVSKIEQGSQLVQTAGLTMDEIVGGVRGITNAIGE EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH IGVGAHEQSTGLEQVNQALSQLDHSTQQNAALVEQSAASAVLLREQAEKLADAVGEFKLA CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEC TA CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 6302843; 11677609; 1660187; 8486661; 8831788 [H]