Definition Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence.
Accession NC_012721
Length 2,827,333

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The map label for this gene is yyaJ [H]

Identifier: 238023910

GI number: 238023910

Start: 547654

End: 549069

Strand: Direct

Name: yyaJ [H]

Synonym: bglu_2g04520

Alternate gene names: 238023910

Gene position: 547654-549069 (Clockwise)

Preceding gene: 238023889

Following gene: 238023912

Centisome position: 19.37

GC content: 70.55

Gene sequence:

>1416_bases
ATGGCCACCGAACACCGACACGCGACCGTCGCCGACGCCGCGCCGCCCGATGCCGGCGCGATCGCGGCGCGCCTCGACCG
CCTGCCGCCGACCCGCACCGTCTGGAAGCTCGTGGTGCTGCTGAGCCTCGGCTTCTTCTTCGAACTCTACGATCTGCTCT
ACAGCGGCTACGTGGCGCCGGGCCTCGTGAAGGGCGGCATCCTGAGCCCGGCCACGCACGGGCTGTTCGGCACCACCGGC
GTGGCGAGCTTCATCGCCGCGCTGTTCGCGGGGCTGTTCATCGGCACGCTCGCCTGCGGCTTCCTCGCCGACCGTTTCGG
GCGGCGCGGCGTGTTCACCTGGTCGCTGCTCTGGTACACGGCGGCCAACCTCGTGATGGCGTTTCAGGACACGGCGGGCG
GCCTCAACTTCTGGCGCTTCATGGTGGGCCTCGGGCTCGGCGTCGAGATGGTGACCATCGGCACCTACATCTCGGAGCTG
GTGCCCAAGCAGATCCGCGGCCGCGCGTTCGCCTGCGAGCAGGCGGTGGGCTTCTGCGCGGTGCCGGTGGTCGCGTTCCT
CGCCTACCTGCTGGTGCCGCGCGCGCCGTTCGGCCTGGACGGCTGGCGCTGGGTGGTGCTGATCGGCGCGCACGGCGCGA
TCTTCGTCTGGTGGATTCGCCGCGCGCTGCCGGAGAGCCCGCGCTGGCTCGCGCAGCAGGGCCGGCTCGACGAGGCGGAT
CGCGTGATGCGCGCGCTCGAGGCGCAGGTGGCCGCCGAATACGGCCGGCCGCTGCCGCCGCCGGGGCCGGCCGAGCCGGT
GGCGGCGCGCGGCCGCTTCGCCGACATGTGGGTGGCGCCGTACCGCAAGCGCACCGTGATGCTGACGGTCTTCAACGTGT
TCCAGACGGTCGGCTTCTACGGCTTTGCGAACTGGGTGCCGACGCTGCTGATCAAGCAGGGCATCACCATCACCACCAGC
CTGATGTACTCGGGGGTGATCGCGCTGGCCGCGCCGGTCGGCCCGCTGATCGGCCTCGCGATCGGCGACCGCTTCGAGCG
CAAGAGCGTGATCGTGGCGATGGCGGGCGCGGCGATCGTCTGCGGGCTGGCGTTCAGCCGCAGCGGTTCGGCCGCGCCGC
TGGTGCTGCTCGGCATCGGCCTCACGCTCGCCAACAACATCATGTCGTACAGCTTCCACGCCTATCAGGCCGAGCTGTTT
CCCACCGCGATCCGCGCGCGCGCGATCGGCTTCGTCTATTCGTGGAGCCGCTTCTCGGCGATCTTCACGTCGTTCGTGAT
CGCCGCGGTGCTGAACGGCTTCGGCACGGCGGGCGTGTTCGCGTTCATCTCGGCCGCGATGCTGATCGTGATGGCGTCGA
TCGGGCTGATGGGGCCGCGCACGCGCGGCATCGCGCTGGAAAGGATCTCGCACTGA

Upstream 100 bases:

>100_bases
GGCCGGCCCGGTACAATGCGCGACGCACCGGCCGCGCTGCCACGCGGCGGCCGGCGCGCGACGACAGGACCTCACGACAA
GACCGATGGAGACGACCGGC

Downstream 100 bases:

>100_bases
AAGCGGGCGGGCGCCGCCCGCTGCCTTCGCGCGGTTTCGCTTCGCCAACGACGACGCGCCCGGGGCCAGCCCCGGGCGCG
TCGTCGTTTGCCGCCGCATT

Product: major facilitator family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MATEHRHATVADAAPPDAGAIAARLDRLPPTRTVWKLVVLLSLGFFFELYDLLYSGYVAPGLVKGGILSPATHGLFGTTG
VASFIAALFAGLFIGTLACGFLADRFGRRGVFTWSLLWYTAANLVMAFQDTAGGLNFWRFMVGLGLGVEMVTIGTYISEL
VPKQIRGRAFACEQAVGFCAVPVVAFLAYLLVPRAPFGLDGWRWVVLIGAHGAIFVWWIRRALPESPRWLAQQGRLDEAD
RVMRALEAQVAAEYGRPLPPPGPAEPVAARGRFADMWVAPYRKRTVMLTVFNVFQTVGFYGFANWVPTLLIKQGITITTS
LMYSGVIALAAPVGPLIGLAIGDRFERKSVIVAMAGAAIVCGLAFSRSGSAAPLVLLGIGLTLANNIMSYSFHAYQAELF
PTAIRARAIGFVYSWSRFSAIFTSFVIAAVLNGFGTAGVFAFISAAMLIVMASIGLMGPRTRGIALERISH

Sequences:

>Translated_471_residues
MATEHRHATVADAAPPDAGAIAARLDRLPPTRTVWKLVVLLSLGFFFELYDLLYSGYVAPGLVKGGILSPATHGLFGTTG
VASFIAALFAGLFIGTLACGFLADRFGRRGVFTWSLLWYTAANLVMAFQDTAGGLNFWRFMVGLGLGVEMVTIGTYISEL
VPKQIRGRAFACEQAVGFCAVPVVAFLAYLLVPRAPFGLDGWRWVVLIGAHGAIFVWWIRRALPESPRWLAQQGRLDEAD
RVMRALEAQVAAEYGRPLPPPGPAEPVAARGRFADMWVAPYRKRTVMLTVFNVFQTVGFYGFANWVPTLLIKQGITITTS
LMYSGVIALAAPVGPLIGLAIGDRFERKSVIVAMAGAAIVCGLAFSRSGSAAPLVLLGIGLTLANNIMSYSFHAYQAELF
PTAIRARAIGFVYSWSRFSAIFTSFVIAAVLNGFGTAGVFAFISAAMLIVMASIGLMGPRTRGIALERISH
>Mature_470_residues
ATEHRHATVADAAPPDAGAIAARLDRLPPTRTVWKLVVLLSLGFFFELYDLLYSGYVAPGLVKGGILSPATHGLFGTTGV
ASFIAALFAGLFIGTLACGFLADRFGRRGVFTWSLLWYTAANLVMAFQDTAGGLNFWRFMVGLGLGVEMVTIGTYISELV
PKQIRGRAFACEQAVGFCAVPVVAFLAYLLVPRAPFGLDGWRWVVLIGAHGAIFVWWIRRALPESPRWLAQQGRLDEADR
VMRALEAQVAAEYGRPLPPPGPAEPVAARGRFADMWVAPYRKRTVMLTVFNVFQTVGFYGFANWVPTLLIKQGITITTSL
MYSGVIALAAPVGPLIGLAIGDRFERKSVIVAMAGAAIVCGLAFSRSGSAAPLVLLGIGLTLANNIMSYSFHAYQAELFP
TAIRARAIGFVYSWSRFSAIFTSFVIAAVLNGFGTAGVFAFISAAMLIVMASIGLMGPRTRGIALERISH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]

Homologues:

Organism=Homo sapiens, GI166064021, Length=393, Percent_Identity=26.7175572519084, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI4506999, Length=402, Percent_Identity=26.6169154228856, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI302148518, Length=364, Percent_Identity=25.5494505494505, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI213021148, Length=424, Percent_Identity=25.7075471698113, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI203098995, Length=353, Percent_Identity=24.929178470255, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI24308167, Length=465, Percent_Identity=22.7956989247312, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI4507005, Length=359, Percent_Identity=25.0696378830084, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI23510410, Length=338, Percent_Identity=27.5147928994083, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI296080734, Length=358, Percent_Identity=25.6983240223464, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI296080721, Length=358, Percent_Identity=25.6983240223464, Blast_Score=66, Evalue=6e-11,
Organism=Homo sapiens, GI296080719, Length=358, Percent_Identity=25.6983240223464, Blast_Score=66, Evalue=7e-11,
Organism=Homo sapiens, GI24497499, Length=358, Percent_Identity=25.6983240223464, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI1788068, Length=467, Percent_Identity=29.1220556745182, Blast_Score=166, Evalue=4e-42,
Organism=Escherichia coli, GI1788074, Length=455, Percent_Identity=29.2307692307692, Blast_Score=159, Evalue=5e-40,
Organism=Escherichia coli, GI87082159, Length=418, Percent_Identity=26.3157894736842, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1786229, Length=407, Percent_Identity=23.8329238329238, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1789207, Length=404, Percent_Identity=23.5148514851485, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1790463, Length=430, Percent_Identity=23.2558139534884, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI87082231, Length=164, Percent_Identity=32.9268292682927, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789312, Length=403, Percent_Identity=23.8213399503722, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87082404, Length=444, Percent_Identity=22.5225225225225, Blast_Score=66, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI25145172, Length=399, Percent_Identity=23.8095238095238, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24640198, Length=435, Percent_Identity=23.448275862069, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24640196, Length=435, Percent_Identity=23.448275862069, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24640200, Length=435, Percent_Identity=23.448275862069, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355657, Length=385, Percent_Identity=25.7142857142857, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI19922616, Length=400, Percent_Identity=23, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR005828 [H]

Pfam domain/function: PF00083 Sugar_tr [H]

EC number: NA

Molecular weight: Translated: 50671; Mature: 50540

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATEHRHATVADAAPPDAGAIAARLDRLPPTRTVWKLVVLLSLGFFFELYDLLYSGYVAP
CCCCCCCCEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GLVKGGILSPATHGLFGTTGVASFIAALFAGLFIGTLACGFLADRFGRRGVFTWSLLWYT
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AANLVMAFQDTAGGLNFWRFMVGLGLGVEMVTIGTYISELVPKQIRGRAFACEQAVGFCA
HHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VPVVAFLAYLLVPRAPFGLDGWRWVVLIGAHGAIFVWWIRRALPESPRWLAQQGRLDEAD
HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCCCHHH
RVMRALEAQVAAEYGRPLPPPGPAEPVAARGRFADMWVAPYRKRTVMLTVFNVFQTVGFY
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHH
GFANWVPTLLIKQGITITTSLMYSGVIALAAPVGPLIGLAIGDRFERKSVIVAMAGAAIV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHEEEEHHHHHH
CGLAFSRSGSAAPLVLLGIGLTLANNIMSYSFHAYQAELFPTAIRARAIGFVYSWSRFSA
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFTSFVIAAVLNGFGTAGVFAFISAAMLIVMASIGLMGPRTRGIALERISH
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCC
>Mature Secondary Structure 
ATEHRHATVADAAPPDAGAIAARLDRLPPTRTVWKLVVLLSLGFFFELYDLLYSGYVAP
CCCCCCCEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC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HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 8011666; 9384377 [H]