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The map label for this gene is hrcU [H]

Identifier: 238023710

GI number: 238023710

Start: 279566

End: 280624

Strand: Reverse

Name: hrcU [H]

Synonym: bglu_2g02380

Alternate gene names: 238023710

Gene position: 280624-279566 (Counterclockwise)

Preceding gene: 238023722

Following gene: 238023709

Centisome position: 9.93

GC content: 67.8

Gene sequence:

>1059_bases
ATGAGCGACGAAAAAACCGAAGAGCCAACCGACAAGAAGCTGCGCGACGCCCGCAAGGACGGCCAGGCGTCGAAGAGCTC
GGACCTGGCCGACGCGATCTCGATGACCGCCGCGATCGGCTTCGTGATCGCCGCGAGCGCCCACCTGCGCGATTCGATGC
GTCAGCTGGTGGTCAGCGCGCTCGACTTCGTGAGCACCGACCACTCGCTGCCCGACATGTTCGACCGGCTCTACCGGTTC
GGGGGCATCGCGCTTTTGGCGGTGGTGCCGCTCGCGCTGGCCGCGGCGCTCGCCGGCGTGATGGGCTCGGCGATGCAGGT
CGGGCTGCAGATCGCGCTCAAGCCGGTGATGCCGAACCTGAACGCGCTGAACCCGGGCGAGGGGCTCAAGAAGATCTTCT
CGATGAAGACGGTGATCGAGACGGTCAAGATGCTCGTCAAGGCCTCGCTGATCTTCGCCGTGATGTGGGTGGTGGTGCGC
GGCCTGATCCCGCTGGTCTCGGGCGCGATCTACCAGCCGCTCGCCGAACTCTCGGCGATGTACTGGGGCATCCTGCTCAA
GCTGATGATGATCGCCGCGGTGATCTTCGTGCTGGTGGGCGCGGCCGACGTCAAGCTGCAGAAGATGCTGTTCATGAAGC
AGATGAAGATGTCGAAGGACGAGGTCAAGCGCGAGCACAAGAACGACGAGGGCGACCCGATGATCAAGGGCGAGCGCCGC
CGCATCGCGCGCGAGATGGCCAACGCCCCGCCGCCGCGCATGGCGCGCGCCAACGTGGTGGTGGTCAACCCCACCCACTA
TGCGGTGGCGCTGCGCTACGCGCCCGACGAGCACCCGCTGCCGGTGGTGATCGCCAAGGGCATGGACGAGGCCGCCGCCG
CGATTAGGCGCGCCGCCGCCGAGGCCGAGGTGCCGATCGTCGGCAACCCGCCGGTGGCGCGCGCGCTCTACAAGGTCGGG
CTCGACGAGCCGATCCCCGACGCGCTGTTCGAGACCATCGCCGCGATCCTGCGCTGGGTCGACTCGATCGGCGCGGCCCG
CCGCGACACGCAACACTGA

Upstream 100 bases:

>100_bases
GTCCGACCGGCCCGCTCTGGCGCCGCGCCCCGCCGCGCGAGCGGCCCCCCGCCACCCAGTCCGCCTCCGGGCCGACGCGT
CTGCGACGAAGCACCGAGCG

Downstream 100 bases:

>100_bases
CCGCCGAGAGCCGGAGCCACGATGCTGAAGTCCCTGAAACTCCCCGCCGGCGGCGAAATCGGCATTGTCGCGCTGGTGGT
GGCGATCATCTCGCTGATGA

Product: type III secretion system protein HrcU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MSDEKTEEPTDKKLRDARKDGQASKSSDLADAISMTAAIGFVIAASAHLRDSMRQLVVSALDFVSTDHSLPDMFDRLYRF
GGIALLAVVPLALAAALAGVMGSAMQVGLQIALKPVMPNLNALNPGEGLKKIFSMKTVIETVKMLVKASLIFAVMWVVVR
GLIPLVSGAIYQPLAELSAMYWGILLKLMMIAAVIFVLVGAADVKLQKMLFMKQMKMSKDEVKREHKNDEGDPMIKGERR
RIAREMANAPPPRMARANVVVVNPTHYAVALRYAPDEHPLPVVIAKGMDEAAAAIRRAAAEAEVPIVGNPPVARALYKVG
LDEPIPDALFETIAAILRWVDSIGAARRDTQH

Sequences:

>Translated_352_residues
MSDEKTEEPTDKKLRDARKDGQASKSSDLADAISMTAAIGFVIAASAHLRDSMRQLVVSALDFVSTDHSLPDMFDRLYRF
GGIALLAVVPLALAAALAGVMGSAMQVGLQIALKPVMPNLNALNPGEGLKKIFSMKTVIETVKMLVKASLIFAVMWVVVR
GLIPLVSGAIYQPLAELSAMYWGILLKLMMIAAVIFVLVGAADVKLQKMLFMKQMKMSKDEVKREHKNDEGDPMIKGERR
RIAREMANAPPPRMARANVVVVNPTHYAVALRYAPDEHPLPVVIAKGMDEAAAAIRRAAAEAEVPIVGNPPVARALYKVG
LDEPIPDALFETIAAILRWVDSIGAARRDTQH
>Mature_351_residues
SDEKTEEPTDKKLRDARKDGQASKSSDLADAISMTAAIGFVIAASAHLRDSMRQLVVSALDFVSTDHSLPDMFDRLYRFG
GIALLAVVPLALAAALAGVMGSAMQVGLQIALKPVMPNLNALNPGEGLKKIFSMKTVIETVKMLVKASLIFAVMWVVVRG
LIPLVSGAIYQPLAELSAMYWGILLKLMMIAAVIFVLVGAADVKLQKMLFMKQMKMSKDEVKREHKNDEGDPMIKGERRR
IAREMANAPPPRMARANVVVVNPTHYAVALRYAPDEHPLPVVIAKGMDEAAAAIRRAAAEAEVPIVGNPPVARALYKVGL
DEPIPDALFETIAAILRWVDSIGAARRDTQH

Specific function: Involved in the secretion of popA, a proteinaceous elicitor of the hypersensitivity response in plants [H]

COG id: COG1377

COG function: function code NU; Flagellar biosynthesis pathway, component FlhB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=350, Percent_Identity=30.5714285714286, Blast_Score=144, Evalue=8e-36,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 38210; Mature: 38078

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDEKTEEPTDKKLRDARKDGQASKSSDLADAISMTAAIGFVIAASAHLRDSMRQLVVSA
CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDFVSTDHSLPDMFDRLYRFGGIALLAVVPLALAAALAGVMGSAMQVGLQIALKPVMPNL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NALNPGEGLKKIFSMKTVIETVKMLVKASLIFAVMWVVVRGLIPLVSGAIYQPLAELSAM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YWGILLKLMMIAAVIFVLVGAADVKLQKMLFMKQMKMSKDEVKREHKNDEGDPMIKGERR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHH
RIAREMANAPPPRMARANVVVVNPTHYAVALRYAPDEHPLPVVIAKGMDEAAAAIRRAAA
HHHHHHHCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHH
EAEVPIVGNPPVARALYKVGLDEPIPDALFETIAAILRWVDSIGAARRDTQH
HCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8316211; 11823852 [H]