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The map label for this gene is ybdK [C]

Identifier: 237814391

GI number: 237814391

Start: 4011849

End: 4012964

Strand: Reverse

Name: ybdK [C]

Synonym: GBP346_A4189

Alternate gene names: 237814391

Gene position: 4012964-4011849 (Counterclockwise)

Preceding gene: 237814392

Following gene: 237814389

Centisome position: 97.91

GC content: 62.63

Gene sequence:

>1116_bases
ATGGCACTCGAAACCTTCGTCAATTCCGAACCGTTCACGTTCGGCGTCGAGCTGGAAATCCAGATCGTCAATACGCACAA
CTACGATCTGACCAAAGCGGCATCCGATCTGATGCGGCTCATCAAGGATGCGAAATTTCCCGGCAACATCACGCCGGAAA
TCACCGAAAGCATGATCGAGCTCTCGACGGGCATATGCAGAACGCACGATCAGGCATTGGGCGAACTGCACGCCATCCGC
GACACGCTCGTGAGCGCGGCCGACCAGCTCAACGTCGGCCTTTGCGGCGGCGGCACGCACGCGTTCCAGCAATGGAGCGA
GCGGCAGATCTTCGACGCGCCGCGCTTCCAGTACATTTCCGAGCTGTACGGCTACCTCGCGAAGCAGTTCACGGTGTTCG
GCCAGCACGTGCACATCGGCTGCCCGGACGCCGACAGCGCGTTGTTCCTGTTGCACTCGATGTCGCGTTTCATTCCGCAC
TTCATTGCGCTTTCGGCGTCGTCGCCGTACGTGCAGAACGTCGACACCGGATTTCATTCGGCACGCCTGAATTCCGTGTT
CGCGTTTCCGCTGTCGGGCCGCGCGCCGTTCGTGCTCACCTGGCACGGCTTCGAGGAATACTTCACGAAGATGGTGAACA
CGGGCGTCGTCAACAGCATGAAGGACTTCTACTGGGACATTCGCCCGAAGCCCGGCTACGGAACGATCGAAGTGCGCGTG
ATGGACACGCCGCTGTCGGTCGACCGCGCGGCCGCGATCGCGTGCTACATCCAGACGCTCGCGCGCTACCTGCTGATCGA
CCGGCCGCTCAAGCTGTCGGAGGACGACTATCTCGTCTACACGTTCAACCGTTTCGAGGCGTGCCGCTTCGGACTCGAGG
GCACCTGCGTGAATCCGCAGACGGGCGAGCGCCGGACGATCGCCGAGGACATCCTCGACACGCTCGATCGCATCGCGCCG
CACGCGGCGGCGCTCGGCTCGCGCGCGGCGCTCGACGAGATCGGCGCGCTCGCGAAGGCGCGCGTCAACGACGCCTCGTG
GCTGCGGACGATCTTCAAGCAGGAAAAATCGCTGAACGAAACGGTTCGCCAGCAGTGCCTGCGGTGGCGCGAATGA

Upstream 100 bases:

>100_bases
CGCTCGTCGTCTATCGCAGCCTGTCGGCCGTCGGCGAGCGGCGCGACGCGAGCTGAGCCGCGCGCTCGACGCTTTTCGCC
CTGTTATCCGGAATCACGCC

Downstream 100 bases:

>100_bases
AAAATAGTTTTGCAAATCCCCGCACCCGGCGAGCCCGGGTTTAGGTTTACCTCGACGTATACGTATGTAAACGTAGTAGT
AGTTAACAAGCCCCCGCCGA

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MALETFVNSEPFTFGVELEIQIVNTHNYDLTKAASDLMRLIKDAKFPGNITPEITESMIELSTGICRTHDQALGELHAIR
DTLVSAADQLNVGLCGGGTHAFQQWSERQIFDAPRFQYISELYGYLAKQFTVFGQHVHIGCPDADSALFLLHSMSRFIPH
FIALSASSPYVQNVDTGFHSARLNSVFAFPLSGRAPFVLTWHGFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRV
MDTPLSVDRAAAIACYIQTLARYLLIDRPLKLSEDDYLVYTFNRFEACRFGLEGTCVNPQTGERRTIAEDILDTLDRIAP
HAAALGSRAALDEIGALAKARVNDASWLRTIFKQEKSLNETVRQQCLRWRE

Sequences:

>Translated_371_residues
MALETFVNSEPFTFGVELEIQIVNTHNYDLTKAASDLMRLIKDAKFPGNITPEITESMIELSTGICRTHDQALGELHAIR
DTLVSAADQLNVGLCGGGTHAFQQWSERQIFDAPRFQYISELYGYLAKQFTVFGQHVHIGCPDADSALFLLHSMSRFIPH
FIALSASSPYVQNVDTGFHSARLNSVFAFPLSGRAPFVLTWHGFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRV
MDTPLSVDRAAAIACYIQTLARYLLIDRPLKLSEDDYLVYTFNRFEACRFGLEGTCVNPQTGERRTIAEDILDTLDRIAP
HAAALGSRAALDEIGALAKARVNDASWLRTIFKQEKSLNETVRQQCLRWRE
>Mature_370_residues
ALETFVNSEPFTFGVELEIQIVNTHNYDLTKAASDLMRLIKDAKFPGNITPEITESMIELSTGICRTHDQALGELHAIRD
TLVSAADQLNVGLCGGGTHAFQQWSERQIFDAPRFQYISELYGYLAKQFTVFGQHVHIGCPDADSALFLLHSMSRFIPHF
IALSASSPYVQNVDTGFHSARLNSVFAFPLSGRAPFVLTWHGFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRVM
DTPLSVDRAAAIACYIQTLARYLLIDRPLKLSEDDYLVYTFNRFEACRFGLEGTCVNPQTGERRTIAEDILDTLDRIAPH
AAALGSRAALDEIGALAKARVNDASWLRTIFKQEKSLNETVRQQCLRWRE

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=369, Percent_Identity=46.3414634146341, Blast_Score=365, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 41779; Mature: 41648

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALETFVNSEPFTFGVELEIQIVNTHNYDLTKAASDLMRLIKDAKFPGNITPEITESMIE
CCCCHHCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LSTGICRTHDQALGELHAIRDTLVSAADQLNVGLCGGGTHAFQQWSERQIFDAPRFQYIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCCCCCHHHHHHH
ELYGYLAKQFTVFGQHVHIGCPDADSALFLLHSMSRFIPHFIALSASSPYVQNVDTGFHS
HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHCCCCCHHH
ARLNSVFAFPLSGRAPFVLTWHGFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRV
HHCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEE
MDTPLSVDRAAAIACYIQTLARYLLIDRPLKLSEDDYLVYTFNRFEACRFGLEGTCVNPQ
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHCCCCCEECCCC
TGERRTIAEDILDTLDRIAPHAAALGSRAALDEIGALAKARVNDASWLRTIFKQEKSLNE
CCCHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TVRQQCLRWRE
HHHHHHHHCCC
>Mature Secondary Structure 
ALETFVNSEPFTFGVELEIQIVNTHNYDLTKAASDLMRLIKDAKFPGNITPEITESMIE
CCCHHCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LSTGICRTHDQALGELHAIRDTLVSAADQLNVGLCGGGTHAFQQWSERQIFDAPRFQYIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCCCCCHHHHHHH
ELYGYLAKQFTVFGQHVHIGCPDADSALFLLHSMSRFIPHFIALSASSPYVQNVDTGFHS
HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHCCCCCHHH
ARLNSVFAFPLSGRAPFVLTWHGFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRV
HHCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEE
MDTPLSVDRAAAIACYIQTLARYLLIDRPLKLSEDDYLVYTFNRFEACRFGLEGTCVNPQ
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHCCCCCEECCCC
TGERRTIAEDILDTLDRIAPHAAALGSRAALDEIGALAKARVNDASWLRTIFKQEKSLNE
CCCHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TVRQQCLRWRE
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA