| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
Click here to switch to the map view.
The map label for this gene is 237814392
Identifier: 237814392
GI number: 237814392
Start: 4013009
End: 4014223
Strand: Reverse
Name: 237814392
Synonym: GBP346_A4190
Alternate gene names: NA
Gene position: 4014223-4013009 (Counterclockwise)
Preceding gene: 237814393
Following gene: 237814391
Centisome position: 97.94
GC content: 66.26
Gene sequence:
>1215_bases ATGAAGTCAGCGTTCTCGTTTCTACCCAACTGGCCGCTCGCCCCGGATGCGATTTTCTGGGCCGGCTTCGCGCTGTTCGC CGCCGGGCTTTGCGGCGAGCTCTGCTATCGCGCATGGCGCCTGCCGCGCATCACCGGCTATGCGGTGATCGGCCTCGTCG CCGGCTCGTTCGGCTTCGGCGTGATCGACGCGAGCACCGACGACACGTCGCGGCTCCTCGTCAACGTCGCGCTCGGCCTG CTGCTGTTCGAGCTCGGCAGCCGGCTCGACTTGCGCTGGATCCGCCGCAATCCGTGGCTCATCGCCTCGAGTCTCGCCGA GGCGACGCTCACGTTCGTGCTCGTGCTTGCGGTGCTGCTGCTGCTCAAGGTGCCCGGGATGATCGCGCTCGTGCTGGCGG CGATCGCGATCTCGACGTCGCCCGCGATGGTGATCCAGCTGAAGACGGAGCTGCGCGCGGAAGGGCAGGTCTCGCAGCGG CTCATCACGCTGTCCGCGCTCAACAGCGTCTATGCGGTCGTGCTGACGAAGCTCGTCACGAGCTGGCTGCATCAGGAAGC GTACGGCAACGTGTTCGCGACGATCCTGCAGCCGATCTATCTGCTCGCCGGCTCGTTCATCGTCGCGTATCTGTTCGCTC GCGCATGCAACTATCTGTTCAGGCACGTCGCGGCGACGATGCGCGACGAACATTCGTTCGTCGCGCTGTTCGGCCTTGTC GTGCTGGCGATTGCGGTCGCGCAGGTGCTCAAGCTGTCGACGATGCTCACGCTGCTGCTCGCCGGCATCATCGTGAAGAA TCTCGAGGCGCGTCCGCAATTGTGGCCCGAGCACTTCGGCACGGCCGGCTGGCTTCTCACCGTGATCCTGTTCGTGCTGA CGCTCACGTCGTTCGAAGGGCAGGACATCGCCGCGGGCGGGCTCATCGCGGGCGCGCTGATTGCGACGCGCTTTCTCGCG AAGCTCGTCGGCGTGCTCGCGTTCGCGAAGCCGAGCGGCCTCGGCGTGAAGCAGGGCATCGCGCTCGGCGTCTCGCTCGT GCCGATGTCGGCGCTCGCGTACCTGCTCGTCGACGACACTTACCAGCTTTACCCGAATTTCGATCCGCGCCTGCGCGCGG TCGTCATGTGCTCGATCGTCGTGCTGCAACTGATCGGGCCGCTCGTCGTCTATCGCAGCCTGTCGGCCGTCGGCGAGCGG CGCGACGCGAGCTGA
Upstream 100 bases:
>100_bases CAACGAACGACGGGGCAACCCCTCATCCAGCGCGCATCATTCGCTCGACTCGCTCGATCCGCGTCGCCGGAGGTTGCCTT CCAAAGGAGAAGTCACCACG
Downstream 100 bases:
>100_bases GCCGCGCGCTCGACGCTTTTCGCCCTGTTATCCGGAATCACGCCATGGCACTCGAAACCTTCGTCAATTCCGAACCGTTC ACGTTCGGCGTCGAGCTGGA
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Sodium/Hydrogen Exchanger Family Protein; Na/H Antiporter
Number of amino acids: Translated: 404; Mature: 404
Protein sequence:
>404_residues MKSAFSFLPNWPLAPDAIFWAGFALFAAGLCGELCYRAWRLPRITGYAVIGLVAGSFGFGVIDASTDDTSRLLVNVALGL LLFELGSRLDLRWIRRNPWLIASSLAEATLTFVLVLAVLLLLKVPGMIALVLAAIAISTSPAMVIQLKTELRAEGQVSQR LITLSALNSVYAVVLTKLVTSWLHQEAYGNVFATILQPIYLLAGSFIVAYLFARACNYLFRHVAATMRDEHSFVALFGLV VLAIAVAQVLKLSTMLTLLLAGIIVKNLEARPQLWPEHFGTAGWLLTVILFVLTLTSFEGQDIAAGGLIAGALIATRFLA KLVGVLAFAKPSGLGVKQGIALGVSLVPMSALAYLLVDDTYQLYPNFDPRLRAVVMCSIVVLQLIGPLVVYRSLSAVGER RDAS
Sequences:
>Translated_404_residues MKSAFSFLPNWPLAPDAIFWAGFALFAAGLCGELCYRAWRLPRITGYAVIGLVAGSFGFGVIDASTDDTSRLLVNVALGL LLFELGSRLDLRWIRRNPWLIASSLAEATLTFVLVLAVLLLLKVPGMIALVLAAIAISTSPAMVIQLKTELRAEGQVSQR LITLSALNSVYAVVLTKLVTSWLHQEAYGNVFATILQPIYLLAGSFIVAYLFARACNYLFRHVAATMRDEHSFVALFGLV VLAIAVAQVLKLSTMLTLLLAGIIVKNLEARPQLWPEHFGTAGWLLTVILFVLTLTSFEGQDIAAGGLIAGALIATRFLA KLVGVLAFAKPSGLGVKQGIALGVSLVPMSALAYLLVDDTYQLYPNFDPRLRAVVMCSIVVLQLIGPLVVYRSLSAVGER RDAS >Mature_404_residues MKSAFSFLPNWPLAPDAIFWAGFALFAAGLCGELCYRAWRLPRITGYAVIGLVAGSFGFGVIDASTDDTSRLLVNVALGL LLFELGSRLDLRWIRRNPWLIASSLAEATLTFVLVLAVLLLLKVPGMIALVLAAIAISTSPAMVIQLKTELRAEGQVSQR LITLSALNSVYAVVLTKLVTSWLHQEAYGNVFATILQPIYLLAGSFIVAYLFARACNYLFRHVAATMRDEHSFVALFGLV VLAIAVAQVLKLSTMLTLLLAGIIVKNLEARPQLWPEHFGTAGWLLTVILFVLTLTSFEGQDIAAGGLIAGALIATRFLA KLVGVLAFAKPSGLGVKQGIALGVSLVPMSALAYLLVDDTYQLYPNFDPRLRAVVMCSIVVLQLIGPLVVYRSLSAVGER RDAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43578; Mature: 43578
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSAFSFLPNWPLAPDAIFWAGFALFAAGLCGELCYRAWRLPRITGYAVIGLVAGSFGFG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC VIDASTDDTSRLLVNVALGLLLFELGSRLDLRWIRRNPWLIASSLAEATLTFVLVLAVLL EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHH LLKVPGMIALVLAAIAISTSPAMVIQLKTELRAEGQVSQRLITLSALNSVYAVVLTKLVT HHHCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SWLHQEAYGNVFATILQPIYLLAGSFIVAYLFARACNYLFRHVAATMRDEHSFVALFGLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH VLAIAVAQVLKLSTMLTLLLAGIIVKNLEARPQLWPEHFGTAGWLLTVILFVLTLTSFEG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCC QDIAAGGLIAGALIATRFLAKLVGVLAFAKPSGLGVKQGIALGVSLVPMSALAYLLVDDT CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC YQLYPNFDPRLRAVVMCSIVVLQLIGPLVVYRSLSAVGERRDAS HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKSAFSFLPNWPLAPDAIFWAGFALFAAGLCGELCYRAWRLPRITGYAVIGLVAGSFGFG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC VIDASTDDTSRLLVNVALGLLLFELGSRLDLRWIRRNPWLIASSLAEATLTFVLVLAVLL EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHH LLKVPGMIALVLAAIAISTSPAMVIQLKTELRAEGQVSQRLITLSALNSVYAVVLTKLVT HHHCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SWLHQEAYGNVFATILQPIYLLAGSFIVAYLFARACNYLFRHVAATMRDEHSFVALFGLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH VLAIAVAQVLKLSTMLTLLLAGIIVKNLEARPQLWPEHFGTAGWLLTVILFVLTLTSFEG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCC QDIAAGGLIAGALIATRFLAKLVGVLAFAKPSGLGVKQGIALGVSLVPMSALAYLLVDDT CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC YQLYPNFDPRLRAVVMCSIVVLQLIGPLVVYRSLSAVGERRDAS HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA