| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is dtd [H]
Identifier: 237813769
GI number: 237813769
Start: 3432191
End: 3432724
Strand: Reverse
Name: dtd [H]
Synonym: GBP346_A3546
Alternate gene names: 237813769
Gene position: 3432724-3432191 (Counterclockwise)
Preceding gene: 237813770
Following gene: 237813768
Centisome position: 83.75
GC content: 74.16
Gene sequence:
>534_bases TTGGCCGGGCATGCCGCGCGCGGTGCGCGGCGCCGCGCGTGGCCGCCGCGCCGCGTGCGTGACGCGGACGCGCGCATGAT CGCCTTGATCCAGCGCGTGAAGCGCGCCGACGTGCGCGTGGGCGAGCGCGTGACGGGCGAGATCGGCCCCGGCCTGCTCG CGCTCGTGTGCGCGGAGCGCGGCGACACCGAGGCGGCCGCCGACAAGCTGCTCGCGAAGGTGCTCGGCTACCGCGTGTTC AGTGACGCGGCGGGCAAGATGAACCTGCCCGTGTCGAACCTCGACGGCGCGGGACGCGCGGGCGGGCTGTTGCTCGTGTC GCAGTTCACGCTCGCCGCCGACACGAACAGCGGCCTGCGCCCGAGCTTCACGCCCGCCGCGCCACCCGACGAGGGCGAGC GCCTGTTCGACTACTTCGTGCGTCGGGCCCGCGAGCGCCATCCGATCGTCGCGACGGGAGAGTTCGGCGCCGACATGCAG GTGTCGCTCGTCAACGACGGCCCCGTGACGTTCTGGCTGCAGACGCGCGCCTGA
Upstream 100 bases:
>100_bases GACAAGGCGCTGAAAGTCGACGCGGGCGAGTTCGTCGTGCAGGTCGGCAAGCGCCGCTTCGCGCGCGTGACGCTTACCGC ATGAGCGCGCGCATCGCCGC
Downstream 100 bases:
>100_bases TGCGCCCTTGACGCTCCGATTCGAGACCGCACCGATGCCCACGACGCAGATTCTCTTCATTCGCCATGGCGAGACGGCCT GGAACCGCATCAAGCGGATT
Product: D-tyrosyl-tRNA(Tyr) deacylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MAGHAARGARRRAWPPRRVRDADARMIALIQRVKRADVRVGERVTGEIGPGLLALVCAERGDTEAAADKLLAKVLGYRVF SDAAGKMNLPVSNLDGAGRAGGLLLVSQFTLAADTNSGLRPSFTPAAPPDEGERLFDYFVRRARERHPIVATGEFGADMQ VSLVNDGPVTFWLQTRA
Sequences:
>Translated_177_residues MAGHAARGARRRAWPPRRVRDADARMIALIQRVKRADVRVGERVTGEIGPGLLALVCAERGDTEAAADKLLAKVLGYRVF SDAAGKMNLPVSNLDGAGRAGGLLLVSQFTLAADTNSGLRPSFTPAAPPDEGERLFDYFVRRARERHPIVATGEFGADMQ VSLVNDGPVTFWLQTRA >Mature_176_residues AGHAARGARRRAWPPRRVRDADARMIALIQRVKRADVRVGERVTGEIGPGLLALVCAERGDTEAAADKLLAKVLGYRVFS DAAGKMNLPVSNLDGAGRAGGLLLVSQFTLAADTNSGLRPSFTPAAPPDEGERLFDYFVRRARERHPIVATGEFGADMQV SLVNDGPVTFWLQTRA
Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine [H]
COG id: COG1490
COG function: function code J; D-Tyr-tRNAtyr deacylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTD family [H]
Homologues:
Organism=Homo sapiens, GI30795227, Length=154, Percent_Identity=37.012987012987, Blast_Score=91, Evalue=5e-19, Organism=Escherichia coli, GI1790320, Length=149, Percent_Identity=62.4161073825503, Blast_Score=180, Evalue=5e-47, Organism=Caenorhabditis elegans, GI115533292, Length=154, Percent_Identity=35.7142857142857, Blast_Score=79, Evalue=9e-16, Organism=Saccharomyces cerevisiae, GI6319982, Length=152, Percent_Identity=38.1578947368421, Blast_Score=89, Evalue=5e-19, Organism=Drosophila melanogaster, GI281361569, Length=152, Percent_Identity=36.8421052631579, Blast_Score=87, Evalue=7e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003732 [H]
Pfam domain/function: PF02580 Tyr_Deacylase [H]
EC number: NA
Molecular weight: Translated: 19093; Mature: 18962
Theoretical pI: Translated: 10.78; Mature: 10.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGHAARGARRRAWPPRRVRDADARMIALIQRVKRADVRVGERVTGEIGPGLLALVCAER CCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHCC GDTEAAADKLLAKVLGYRVFSDAAGKMNLPVSNLDGAGRAGGLLLVSQFTLAADTNSGLR CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC PSFTPAAPPDEGERLFDYFVRRARERHPIVATGEFGADMQVSLVNDGPVTFWLQTRA CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCEEEEEEECC >Mature Secondary Structure AGHAARGARRRAWPPRRVRDADARMIALIQRVKRADVRVGERVTGEIGPGLLALVCAER CCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHCC GDTEAAADKLLAKVLGYRVFSDAAGKMNLPVSNLDGAGRAGGLLLVSQFTLAADTNSGLR CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC PSFTPAAPPDEGERLFDYFVRRARERHPIVATGEFGADMQVSLVNDGPVTFWLQTRA CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA