Click here to switch to the map view.

The map label for this gene is dadA [H]

Identifier: 237813277

GI number: 237813277

Start: 2956535

End: 2957821

Strand: Direct

Name: dadA [H]

Synonym: GBP346_A3044

Alternate gene names: 237813277

Gene position: 2956535-2957821 (Clockwise)

Preceding gene: 237813274

Following gene: 237813284

Centisome position: 72.14

GC content: 68.14

Gene sequence:

>1287_bases
ATGCGTGTGGTTATTTTGGGCAGTGGCGTGGTCGGCGTGGCGAGCGCCTATTATTTGGCACGCGCGGGTCACGAAGTCAC
GGTGATCGACCGCGAGGCCGGCCCCGCCCTCGACACCAGCTTTGCGAACGCGGGCCAGATCTCGCCCGGCTACGCGGCGC
CGTGGGCCGCGCCCGGCGTACCGCTGAAGGCCGTCAAATGGATGTTCGAGAAGCATGCGCCGCTCGCGATCCGCCTCGAC
GGCACGCGCTTCCAGCTGCAATGGATGTGGCAAATGCTGCGCAACTGCACGACCGAGCGCTACGCGCTGAACAAGGGCCG
GATGGTGCGCCTCGCCGAATACAGCCGCGATTGCCTGCAGGCGCTGCGCGCGGAGACGGCTATCCAATACGAGGGCCGCA
CGGGCGGCACGCTGCAGGTCTTCCGCACGCAGCAACAGCTCGACGGCGCCGCGAAGGACATCGCGGTGCTGCGCGAAGCG
AACGTGCCGTTCGAGCTGCTGTCGAGCGACGAACTGAAGAAGGCCGAGCCGGCGCTCGCCGCGGTGTCGCACAAGCTGAC
GGGCGGCCTGCGCCTGCCGGGCGACGAAACGGGCGACTGCCAGCTCTTCACGACGCGCCTTGCCGCGCTCGCCGAGCAGC
TCGGCGTGAAGTTCCGCTTCAATACGCGCATCGACGCGCTCGCCGTCGCGGGCGGCAAGATCGCCGGCGTCCAGTGCGGC
GGCGAAATGGTGCGCGCTGACGCTTACGTGGTCGCGCTCGGCTCATACTCGACGAACCTCGTCGCGAGTCTCGTGAAGAT
TCCGGTGTATCCGCTGAAGGGCTATTCGATCACCGCGCCGATCGTCGACGCGGCGAAGGCGCCCGTGTCGACCGTGCTCG
ACGAAACCTACAAGATCGCGATCACGCGTTTCGACGACCGGATTCGCGTCGGCGGGATGGCGGAGATCGTCGGCTTCGAC
AAGCGGCTGCGCGACGCGCGCCGCGGCACGCTCGAGATGTGCGTCAACGACCTGTTCCCGGGCGGCGGCGATACGGCGAA
GGCGACGTTCTGGACCGGCCTGCGGCCGATGACGCCGGACGGCACGCCGATCGTCGGCCGCACGCCGGTGCCGAACCTGT
TCCTCAACACGGGGCATGGCACGCTCGGCTGGACGATGTCGTGCGGCTCCGGCCAACTGCTCGCCGATCTGATGTCGGGC
AAGAAGCCCGCGATCCGCGCGGACGACCTGTCGGTGCATCGCTATCTGAGCGAGACGGACGGCGAGCATCGCCCCGCATA
CGCATGA

Upstream 100 bases:

>100_bases
CTCAACCATACCATAGCGCAAAAAACTAGGTCGGATCGAGATCGCAGAGCGCATCGGGTGCGCCGCGCGCCGTCCGGCGT
TTTCTCTATCCGGAGCAGCT

Downstream 100 bases:

>100_bases
TGCGCTGACGCGCAACCGAGGCGGCCCGCGCACCACCGCCGCCTCGCCCGCCCAAAAGAAACGGCGCCCTCGGGCGCCGT
TCCGCGTTTGGCCTCCGGCG

Product: D-amino acid dehydrogenase small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MRVVILGSGVVGVASAYYLARAGHEVTVIDREAGPALDTSFANAGQISPGYAAPWAAPGVPLKAVKWMFEKHAPLAIRLD
GTRFQLQWMWQMLRNCTTERYALNKGRMVRLAEYSRDCLQALRAETAIQYEGRTGGTLQVFRTQQQLDGAAKDIAVLREA
NVPFELLSSDELKKAEPALAAVSHKLTGGLRLPGDETGDCQLFTTRLAALAEQLGVKFRFNTRIDALAVAGGKIAGVQCG
GEMVRADAYVVALGSYSTNLVASLVKIPVYPLKGYSITAPIVDAAKAPVSTVLDETYKIAITRFDDRIRVGGMAEIVGFD
KRLRDARRGTLEMCVNDLFPGGGDTAKATFWTGLRPMTPDGTPIVGRTPVPNLFLNTGHGTLGWTMSCGSGQLLADLMSG
KKPAIRADDLSVHRYLSETDGEHRPAYA

Sequences:

>Translated_428_residues
MRVVILGSGVVGVASAYYLARAGHEVTVIDREAGPALDTSFANAGQISPGYAAPWAAPGVPLKAVKWMFEKHAPLAIRLD
GTRFQLQWMWQMLRNCTTERYALNKGRMVRLAEYSRDCLQALRAETAIQYEGRTGGTLQVFRTQQQLDGAAKDIAVLREA
NVPFELLSSDELKKAEPALAAVSHKLTGGLRLPGDETGDCQLFTTRLAALAEQLGVKFRFNTRIDALAVAGGKIAGVQCG
GEMVRADAYVVALGSYSTNLVASLVKIPVYPLKGYSITAPIVDAAKAPVSTVLDETYKIAITRFDDRIRVGGMAEIVGFD
KRLRDARRGTLEMCVNDLFPGGGDTAKATFWTGLRPMTPDGTPIVGRTPVPNLFLNTGHGTLGWTMSCGSGQLLADLMSG
KKPAIRADDLSVHRYLSETDGEHRPAYA
>Mature_428_residues
MRVVILGSGVVGVASAYYLARAGHEVTVIDREAGPALDTSFANAGQISPGYAAPWAAPGVPLKAVKWMFEKHAPLAIRLD
GTRFQLQWMWQMLRNCTTERYALNKGRMVRLAEYSRDCLQALRAETAIQYEGRTGGTLQVFRTQQQLDGAAKDIAVLREA
NVPFELLSSDELKKAEPALAAVSHKLTGGLRLPGDETGDCQLFTTRLAALAEQLGVKFRFNTRIDALAVAGGKIAGVQCG
GEMVRADAYVVALGSYSTNLVASLVKIPVYPLKGYSITAPIVDAAKAPVSTVLDETYKIAITRFDDRIRVGGMAEIVGFD
KRLRDARRGTLEMCVNDLFPGGGDTAKATFWTGLRPMTPDGTPIVGRTPVPNLFLNTGHGTLGWTMSCGSGQLLADLMSG
KKPAIRADDLSVHRYLSETDGEHRPAYA

Specific function: Oxidative deamination of D-amino acids [H]

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Inner Membrane-Bound [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DadA oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787438, Length=415, Percent_Identity=73.7349397590361, Blast_Score=641, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023080
- InterPro:   IPR006076 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.4.99.1 [H]

Molecular weight: Translated: 46176; Mature: 46176

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVVILGSGVVGVASAYYLARAGHEVTVIDREAGPALDTSFANAGQISPGYAAPWAAPGV
CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PLKAVKWMFEKHAPLAIRLDGTRFQLQWMWQMLRNCTTERYALNKGRMVRLAEYSRDCLQ
CHHHHHHHHHCCCCEEEEECCCEEHHHHHHHHHHHCCHHHEECCCCCEEEHHHHHHHHHH
ALRAETAIQYEGRTGGTLQVFRTQQQLDGAAKDIAVLREANVPFELLSSDELKKAEPALA
HHHHHHEEEECCCCCCEEEEEECHHHHCCHHHHHHHHHCCCCCHHHCCCCCHHHHCHHHH
AVSHKLTGGLRLPGDETGDCQLFTTRLAALAEQLGVKFRFNTRIDALAVAGGKIAGVQCG
HHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCEEEEEECC
GEMVRADAYVVALGSYSTNLVASLVKIPVYPLKGYSITAPIVDAAKAPVSTVLDETYKIA
CCEEECCEEEEEECCCCHHHHHHHHHCCCEECCCCEEECCHHHHHCCCHHHHHCCCEEEE
ITRFDDRIRVGGMAEIVGFDKRLRDARRGTLEMCVNDLFPGGGDTAKATFWTGLRPMTPD
EEEECCCEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC
GTPIVGRTPVPNLFLNTGHGTLGWTMSCGSGQLLADLMSGKKPAIRADDLSVHRYLSETD
CCEEECCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHCCCCCCEECCCHHHHHHHHHCC
GEHRPAYA
CCCCCCCC
>Mature Secondary Structure
MRVVILGSGVVGVASAYYLARAGHEVTVIDREAGPALDTSFANAGQISPGYAAPWAAPGV
CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PLKAVKWMFEKHAPLAIRLDGTRFQLQWMWQMLRNCTTERYALNKGRMVRLAEYSRDCLQ
CHHHHHHHHHCCCCEEEEECCCEEHHHHHHHHHHHCCHHHEECCCCCEEEHHHHHHHHHH
ALRAETAIQYEGRTGGTLQVFRTQQQLDGAAKDIAVLREANVPFELLSSDELKKAEPALA
HHHHHHEEEECCCCCCEEEEEECHHHHCCHHHHHHHHHCCCCCHHHCCCCCHHHHCHHHH
AVSHKLTGGLRLPGDETGDCQLFTTRLAALAEQLGVKFRFNTRIDALAVAGGKIAGVQCG
HHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCEEEEEECC
GEMVRADAYVVALGSYSTNLVASLVKIPVYPLKGYSITAPIVDAAKAPVSTVLDETYKIA
CCEEECCEEEEEECCCCHHHHHHHHHCCCEECCCCEEECCHHHHHCCCHHHHHCCCEEEE
ITRFDDRIRVGGMAEIVGFDKRLRDARRGTLEMCVNDLFPGGGDTAKATFWTGLRPMTPD
EEEECCCEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC
GTPIVGRTPVPNLFLNTGHGTLGWTMSCGSGQLLADLMSGKKPAIRADDLSVHRYLSETD
CCEEECCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHCCCCCCEECCCHHHHHHHHHCC
GEHRPAYA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA