Click here to switch to the map view.

The map label for this gene is yfjD [C]

Identifier: 229918398

GI number: 229918398

Start: 2649794

End: 2651068

Strand: Direct

Name: yfjD [C]

Synonym: EAT1b_2683

Alternate gene names: 229918398

Gene position: 2649794-2651068 (Clockwise)

Preceding gene: 229918397

Following gene: 229918403

Centisome position: 88.33

GC content: 51.22

Gene sequence:

>1275_bases
GTGGACCCTGTGCCCTCGTCAAGTTTAATTCTATATGTAGTTCTCGTCATGTTGTCAGCGTTTTTCTCATCAGCAGAAAC
AGCGCTCTCGAGTGTGAACCGGGTCCGGATGATTCGGATGGCAGAGGATGGCGACAAAGCCGCAAAACGTGTCCTCAGTC
TCGTCGACCGTTTTGATGATACGCTCTCGACGATTCTCGTCGGGAACAATATCGTCAACATCGGTTCGGCGACTGTGTCG
ACGGCCATCGCCACATCGATTTTCAGTGGGGGGACCGGCCTTCTCGTGTCAACGTTCGCGACGACGGTCATCATCTTGAT
CTTCGGTGAGATTTTGCCGAAATCGCTCGCGAAAGAGTTTGCGGAGAAGTACTCGCTTCTCATCAGTGGCATCCTTGTAT
TCCTCGTTAAAGTCCTCAAACCGGTGACGATGATTTTCACCGGCTTGAAGAAGTTGACCCTTCGAATGATTGGGATGAAA
GACAAGGAGCCATCCGTCACCGAAGAAGAGTTGAAAGTGCTCGTCGATATGGGGGAAGAGGAAGGTGTGCTTGGTGAGAC
GGAAGCTGAGCTCGTCCATAGCGCCTTTGCCTTCAACGATATTACGGTCGATGATGTGCTGACGCCACGAATCGATATTC
TGGCCGTCGACATCGACGATTCGCTTGATGAAATCAAAGACACGATTTTCAGTGGTGGACATTCGCGTTTGCCGGTCTAC
AAAGACTCGATTGACAACGTCATCGGTGTCTTGTCGGAACGTGACTTCTTGCGTTCGATGATGAAGGATGAAGTGACGGA
TGTCCGTTCGCTCATCCGCCCGCTCACGTACGTGTCACCGCAGACGAAATTGATTGAACTACTTCCGATTCTGCAGCAGA
AACAATCTCACATGGCTGTCGTCCTCGATGAATTCGGGGGCACGGCGGGTCTCATCACGTTAGAAGACATGCTTGAGGAA
CTCGTCGGCGACATCTGGGATGAGCACGACGAATCCGTCGTCTATCTCAGACGTCTCCGTGAAGGGGTCTATGAGTGTAT
GGCTGACATGAACGTTGATGAATTCGCAGAAGAGATGGGGATTGCAGAACCAGACGTCGATTCCAATACGATGGGCGGTT
GGTTCGTTGAATTGCTCGGCGACATCCCGGAGAAAGGTGCACAAGTCACGTATCAAGACATGACGTTCACCGTTCTCCAT
GTGGAGAAACGCCGTGTCCGGAAACTGTTAGTGGAGACTGGACAATCTCAGCAAGAAGACATGCAAGAAGCATAA

Upstream 100 bases:

>100_bases
GGGTGCCGAGGACGGTAGTGTCGTCGCGATCCTCGACTTCGAATTCGAGTTTGTGGAATAAAAAATTTTTTGTTAAGAAG
AAACGGAGTGTGAAGCTAAC

Downstream 100 bases:

>100_bases
ACAAAAGGGATGATTCGCACATGGCGGATCATCCCTTTTTGCGTCATACGGATTGGCGTTCAATGCGCTCAATCAGTTCA
TATGGCCGTACTTTATAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MDPVPSSSLILYVVLVMLSAFFSSAETALSSVNRVRMIRMAEDGDKAAKRVLSLVDRFDDTLSTILVGNNIVNIGSATVS
TAIATSIFSGGTGLLVSTFATTVIILIFGEILPKSLAKEFAEKYSLLISGILVFLVKVLKPVTMIFTGLKKLTLRMIGMK
DKEPSVTEEELKVLVDMGEEEGVLGETEAELVHSAFAFNDITVDDVLTPRIDILAVDIDDSLDEIKDTIFSGGHSRLPVY
KDSIDNVIGVLSERDFLRSMMKDEVTDVRSLIRPLTYVSPQTKLIELLPILQQKQSHMAVVLDEFGGTAGLITLEDMLEE
LVGDIWDEHDESVVYLRRLREGVYECMADMNVDEFAEEMGIAEPDVDSNTMGGWFVELLGDIPEKGAQVTYQDMTFTVLH
VEKRRVRKLLVETGQSQQEDMQEA

Sequences:

>Translated_424_residues
MDPVPSSSLILYVVLVMLSAFFSSAETALSSVNRVRMIRMAEDGDKAAKRVLSLVDRFDDTLSTILVGNNIVNIGSATVS
TAIATSIFSGGTGLLVSTFATTVIILIFGEILPKSLAKEFAEKYSLLISGILVFLVKVLKPVTMIFTGLKKLTLRMIGMK
DKEPSVTEEELKVLVDMGEEEGVLGETEAELVHSAFAFNDITVDDVLTPRIDILAVDIDDSLDEIKDTIFSGGHSRLPVY
KDSIDNVIGVLSERDFLRSMMKDEVTDVRSLIRPLTYVSPQTKLIELLPILQQKQSHMAVVLDEFGGTAGLITLEDMLEE
LVGDIWDEHDESVVYLRRLREGVYECMADMNVDEFAEEMGIAEPDVDSNTMGGWFVELLGDIPEKGAQVTYQDMTFTVLH
VEKRRVRKLLVETGQSQQEDMQEA
>Mature_424_residues
MDPVPSSSLILYVVLVMLSAFFSSAETALSSVNRVRMIRMAEDGDKAAKRVLSLVDRFDDTLSTILVGNNIVNIGSATVS
TAIATSIFSGGTGLLVSTFATTVIILIFGEILPKSLAKEFAEKYSLLISGILVFLVKVLKPVTMIFTGLKKLTLRMIGMK
DKEPSVTEEELKVLVDMGEEEGVLGETEAELVHSAFAFNDITVDDVLTPRIDILAVDIDDSLDEIKDTIFSGGHSRLPVY
KDSIDNVIGVLSERDFLRSMMKDEVTDVRSLIRPLTYVSPQTKLIELLPILQQKQSHMAVVLDEFGGTAGLITLEDMLEE
LVGDIWDEHDESVVYLRRLREGVYECMADMNVDEFAEEMGIAEPDVDSNTMGGWFVELLGDIPEKGAQVTYQDMTFTVLH
VEKRRVRKLLVETGQSQQEDMQEA

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=376, Percent_Identity=26.8617021276596, Blast_Score=160, Evalue=2e-39,
Organism=Homo sapiens, GI94681046, Length=304, Percent_Identity=26.3157894736842, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI40068053, Length=343, Percent_Identity=26.2390670553936, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI40068055, Length=343, Percent_Identity=26.2390670553936, Blast_Score=86, Evalue=9e-17,
Organism=Escherichia coli, GI145693175, Length=411, Percent_Identity=27.9805352798054, Blast_Score=184, Evalue=8e-48,
Organism=Escherichia coli, GI1790664, Length=428, Percent_Identity=24.7663551401869, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1786879, Length=252, Percent_Identity=27.7777777777778, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI87082033, Length=264, Percent_Identity=27.2727272727273, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788119, Length=261, Percent_Identity=23.7547892720307, Blast_Score=72, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71980512, Length=356, Percent_Identity=26.4044943820225, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324512, Length=335, Percent_Identity=28.6567164179104, Blast_Score=98, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46917; Mature: 46917

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPVPSSSLILYVVLVMLSAFFSSAETALSSVNRVRMIRMAEDGDKAAKRVLSLVDRFDD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TLSTILVGNNIVNIGSATVSTAIATSIFSGGTGLLVSTFATTVIILIFGEILPKSLAKEF
HHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEKYSLLISGILVFLVKVLKPVTMIFTGLKKLTLRMIGMKDKEPSVTEEELKVLVDMGEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
EGVLGETEAELVHSAFAFNDITVDDVLTPRIDILAVDIDDSLDEIKDTIFSGGHSRLPVY
CCCCCCHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCH
KDSIDNVIGVLSERDFLRSMMKDEVTDVRSLIRPLTYVSPQTKLIELLPILQQKQSHMAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEE
VLDEFGGTAGLITLEDMLEELVGDIWDEHDESVVYLRRLREGVYECMADMNVDEFAEEMG
HHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
IAEPDVDSNTMGGWFVELLGDIPEKGAQVTYQDMTFTVLHVEKRRVRKLLVETGQSQQED
CCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCEEEEEHHHHHHHHHHHHHCCCCHHHH
MQEA
HHCC
>Mature Secondary Structure
MDPVPSSSLILYVVLVMLSAFFSSAETALSSVNRVRMIRMAEDGDKAAKRVLSLVDRFDD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TLSTILVGNNIVNIGSATVSTAIATSIFSGGTGLLVSTFATTVIILIFGEILPKSLAKEF
HHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEKYSLLISGILVFLVKVLKPVTMIFTGLKKLTLRMIGMKDKEPSVTEEELKVLVDMGEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
EGVLGETEAELVHSAFAFNDITVDDVLTPRIDILAVDIDDSLDEIKDTIFSGGHSRLPVY
CCCCCCHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCH
KDSIDNVIGVLSERDFLRSMMKDEVTDVRSLIRPLTYVSPQTKLIELLPILQQKQSHMAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEE
VLDEFGGTAGLITLEDMLEELVGDIWDEHDESVVYLRRLREGVYECMADMNVDEFAEEMG
HHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
IAEPDVDSNTMGGWFVELLGDIPEKGAQVTYQDMTFTVLHVEKRRVRKLLVETGQSQQED
CCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCEEEEEHHHHHHHHHHHHHCCCCHHHH
MQEA
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]