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The map label for this gene is liaF [H]

Identifier: 229918076

GI number: 229918076

Start: 2309296

End: 2309985

Strand: Direct

Name: liaF [H]

Synonym: EAT1b_2355

Alternate gene names: 229918076

Gene position: 2309296-2309985 (Clockwise)

Preceding gene: 229918075

Following gene: 229918077

Centisome position: 76.98

GC content: 47.25

Gene sequence:

>690_bases
ATGGAACGTTGGAACACACGTCAAATCATTGGATTTATGATTATCTTATTTTCAGTCGGACTCTTCATCGATATCGTGAC
GGGTGGCAATAGCGTCTTATTCAGCATGATCCTCCCGCTGCTTCTCCTTTATATCGGGCGACGGTTCAGTCGTCGTGGCA
AGCAGTCTGCTAGCTATATTTTTTACGCAATCGGAGGAATCCTCTTGATTGGCTTGATTTTCTCATCTGCGGCATTCGGA
TTCGTGCTCTCCGGACTTCTCCTGTTATTCGGCTATCGACTCTATAAGAATCGACCGGTCGAATCGAAAATCCGGACACC
CCTTCGTCAAGAACAAGCCTTCTCATTTGGGATGAAAGAGTCAGGGCACTATGTGTTACGGGATACGAATGAGTTCTTTT
TACTACGGGATGTCGAGATGGATTTGTCACAAGCCATCATTCCGGAAGGAGAGACGTTCTTATTACTCAATGGACTCGCA
GGAGATATTCGAATCCTCATTCCTGCGGGGTATGACTATTCGATTGACGCATCGATCGGGTTCGGTAAAGTGCAGGTCGA
TGACTCGAACTATTCGCCGGTGTTCAATCGTCGCTTCTATACAGCGTCTGATGATTATGTCCAGGCCACGCGAAAAGTCC
GGATTCATATCGTGCTCATGAGCGGAAGTGTCGAGGTGATGACGGTATGA

Upstream 100 bases:

>100_bases
GCGTCGCTTTAAACAAGAGTGAGGTGACGGTTCGGCGATGACCTGAACAAGGTCATCGCTTTCTTTGCTTCATACATATG
AACAGAAAGGGGGAATGGAC

Downstream 100 bases:

>100_bases
AAAAAGATTCTTATCCACGAACGGTCGTCTGGCATCAACTGTTTAGTAGCCTGTTGACGGCTTTCTTGATTACAGTAGCG
TTTCTCATAGGTGACTCGAC

Product: membrane protein-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MERWNTRQIIGFMIILFSVGLFIDIVTGGNSVLFSMILPLLLLYIGRRFSRRGKQSASYIFYAIGGILLIGLIFSSAAFG
FVLSGLLLLFGYRLYKNRPVESKIRTPLRQEQAFSFGMKESGHYVLRDTNEFFLLRDVEMDLSQAIIPEGETFLLLNGLA
GDIRILIPAGYDYSIDASIGFGKVQVDDSNYSPVFNRRFYTASDDYVQATRKVRIHIVLMSGSVEVMTV

Sequences:

>Translated_229_residues
MERWNTRQIIGFMIILFSVGLFIDIVTGGNSVLFSMILPLLLLYIGRRFSRRGKQSASYIFYAIGGILLIGLIFSSAAFG
FVLSGLLLLFGYRLYKNRPVESKIRTPLRQEQAFSFGMKESGHYVLRDTNEFFLLRDVEMDLSQAIIPEGETFLLLNGLA
GDIRILIPAGYDYSIDASIGFGKVQVDDSNYSPVFNRRFYTASDDYVQATRKVRIHIVLMSGSVEVMTV
>Mature_229_residues
MERWNTRQIIGFMIILFSVGLFIDIVTGGNSVLFSMILPLLLLYIGRRFSRRGKQSASYIFYAIGGILLIGLIFSSAAFG
FVLSGLLLLFGYRLYKNRPVESKIRTPLRQEQAFSFGMKESGHYVLRDTNEFFLLRDVEMDLSQAIIPEGETFLLLNGLA
GDIRILIPAGYDYSIDASIGFGKVQVDDSNYSPVFNRRFYTASDDYVQATRKVRIHIVLMSGSVEVMTV

Specific function: Unknown

COG id: COG4758

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016975 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25860; Mature: 25860

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERWNTRQIIGFMIILFSVGLFIDIVTGGNSVLFSMILPLLLLYIGRRFSRRGKQSASYI
CCCCCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
FYAIGGILLIGLIFSSAAFGFVLSGLLLLFGYRLYKNRPVESKIRTPLRQEQAFSFGMKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHCCCCC
SGHYVLRDTNEFFLLRDVEMDLSQAIIPEGETFLLLNGLAGDIRILIPAGYDYSIDASIG
CCCEEEEECCCEEEEEECCCCHHHHCCCCCCEEEEEECCCCCEEEEEECCCCEEEECCCC
FGKVQVDDSNYSPVFNRRFYTASDDYVQATRKVRIHIVLMSGSVEVMTV
CCEEEECCCCCCCCCCCEEEECCCHHHHHEEEEEEEEEEEECCEEEEEC
>Mature Secondary Structure
MERWNTRQIIGFMIILFSVGLFIDIVTGGNSVLFSMILPLLLLYIGRRFSRRGKQSASYI
CCCCCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
FYAIGGILLIGLIFSSAAFGFVLSGLLLLFGYRLYKNRPVESKIRTPLRQEQAFSFGMKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHCCCCC
SGHYVLRDTNEFFLLRDVEMDLSQAIIPEGETFLLLNGLAGDIRILIPAGYDYSIDASIG
CCCEEEEECCCEEEEEECCCCHHHHCCCCCCEEEEEECCCCCEEEEEECCCCEEEECCCC
FGKVQVDDSNYSPVFNRRFYTASDDYVQATRKVRIHIVLMSGSVEVMTV
CCEEEECCCCCCCCCCCEEEECCCHHHHHEEEEEEEEEEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377; 12207695 [H]