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The map label for this gene is ydaM [C]

Identifier: 229917551

GI number: 229917551

Start: 1793205

End: 1795265

Strand: Reverse

Name: ydaM [C]

Synonym: EAT1b_1826

Alternate gene names: 229917551

Gene position: 1795265-1793205 (Counterclockwise)

Preceding gene: 229917552

Following gene: 229917550

Centisome position: 59.84

GC content: 49.01

Gene sequence:

>2061_bases
ATGAAAGCTGACCAAACACTTCAATCCAACGCATCGATTTTACTACGGACGTTCGATAAAATTTCAGACTATGTGTTCTT
TATGGAAGTCGATGGTTCAGCATATCGCTACGTCTTCGTAAATGAGCCTGGGAAACGGGCCATCAATTGGTCAGATGCGG
ATGTCGGGAAGACCATCGATGAGTTGGTCCCGACCGAGACCGCTAAACTTATTACGCAGTATTACGATGAAGCGATTCGT
ACAAAAAAGAGTGTCGTCTATGAAGACTACCGTCTTGCTGACTCCTTTTATACGGATACGGTCGAGGCGGATGATGTATT
GACGCTCCCCCTTCATTATTTCGAGTCAGAAGTGACTCCGATTTTCAATGATGAGGGGAACTGTACCCATATCGTCTCCG
TCGTTCGTGAAGTGACGGAACGGAAGCGTCGCGAACTCGAATTGTCGATTTTAAAAGATCATCACGAGTCGCTACGACGT
TATTCTCCACATGGCATCTTTGTACTCGACCATCATTTGAACATCAAATCCGTCAACCCGGCCGTCACGGTCATCACGGG
TCATAAGGAACAAGATATGCTTCACCAACCGTTCCTAAATTGGCTTCCCGAGTGTGAGCGGTCTCGGGTCAGGAAAGGGT
TACAATTCACGCTGTCTGGGATTCCACACAAGTATTCCATTTATGCTGAACATCAATCCGGTGAACGACTCGACTTAACC
GTCCTCAACATTCCAATCGAGGTCGGCGGTAACATCACCGGCCTGTTTGCGATCATCATTGATTTGACGCCAGAGAAGAA
TGCTGAGCGTGCCACGGTCGAAAGCGAACGTCGTTACCGTCAGTTGATTGAAACCATTCCGGAAGGCATCATTGTGCATC
AGGAAGGACAGATTATATATGCGAACGCGATGGCACTCGCCACAATCGGAGAAACCTATCTAGAGAGTGAATCGATTTTT
TCATTCATCGCAGAAGAGTATCATCAGTCCACCCGTCAACGACTTGCCTCTCTCGAGCTCGGAGGCCCCGTCCAAGACAC
GGAAATGGTCATCATGACACCGAGTGGAGACAAGCTCCAGATGGATATCAGTAGCCTTCTCATCGATTATGAGGGCGAAA
CGGCCGTCTTAACGATTTTGCGTGATGTCACGGAGAAACGTGAAATGGAACAAGCGTTAAGACAAAGTGAGTTACAATAT
CGATTGATCACAGAAAACATGAGCGACCTCGTCTGCATACTAGAGCGGGATGGTACCGTTCGCTATGCATCCCCTTCTCA
CCGTACCGTGCTCGGCTTCGCGGCCGGGTATTACGAAGGGAAGAATACGCTCGACTATATCCATCCGGACGACATCCACA
TCGTCAGAGGACAGTTGAAAGAAATGAAGGAACAAGACGTGTCCTTGACCCTTGAGTTCCGTCATTTTCATGCTGATCAG
CGCTGGATTTGGCTCGAAACGAAAATTCAGGCCATCTATGATGAGTCCGGACATCTCCTTCACTACTTGACGGTCAGCCG
AGAAATCATGCAGCGAAAGGCGCTCGAGAAACAGCTGAAACATTTGGCGTATCATGACACGCTGACCGATTTACCGAACC
GTCGTTTCTTCCTCGCCTACCTCGAGGAAGCGATCGATCGAACCGAATTCGAGCAAGGTGAATTGGCCGTCCTCGCCCTT
GACGTCGACCGGTTCAAACAAATCAACGATACATTCGGTCATGATGTGGGCGATGAGCTCTTGCGACAACTCGCTCGTCG
ATTGACCTCCGTGCTTCGCAAACAAGATATGATTGCGAGACTTGGCGGTGACGAGTTTGCCGTTCTCATTCGCTTCAACG
ATCCCTGTGCCCTACATCGGGTTGCAGAGAAAATCATTCAAGCACTTCAGCGTCCATGGGAAATCGACCAACATACGTTC
ATCACGACTTCAAGTGTCGGGGGTGCGCGATATGTGAAAGGACTATCGATCAAGCAGTTACTAAAACGTGCCGACCTCGC
TCTCTATGAAGCCAAAGCAGGCGGACGAAATCAATATGCACTCGCAAAGGACCACCGATAA

Upstream 100 bases:

>100_bases
ACATCCCGTCTTTTTTTGAAAGTTCACACATTTGGTCGAATGATGCGGTAAGATAAAAATGACGTGTTAAAAATAGAATG
AACGAAATGAGGGAGACGAG

Downstream 100 bases:

>100_bases
GTGGTTCTTTTTTCACGTGAAACATCGGAAATAACTCCTAAATCCGAACATTAAACATAAATAAATTAAATTTTATTCAT
TTTTAGCTCATTTTGATTAA

Product: diguanylate cyclase with PAS/PAC sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 686; Mature: 686

Protein sequence:

>686_residues
MKADQTLQSNASILLRTFDKISDYVFFMEVDGSAYRYVFVNEPGKRAINWSDADVGKTIDELVPTETAKLITQYYDEAIR
TKKSVVYEDYRLADSFYTDTVEADDVLTLPLHYFESEVTPIFNDEGNCTHIVSVVREVTERKRRELELSILKDHHESLRR
YSPHGIFVLDHHLNIKSVNPAVTVITGHKEQDMLHQPFLNWLPECERSRVRKGLQFTLSGIPHKYSIYAEHQSGERLDLT
VLNIPIEVGGNITGLFAIIIDLTPEKNAERATVESERRYRQLIETIPEGIIVHQEGQIIYANAMALATIGETYLESESIF
SFIAEEYHQSTRQRLASLELGGPVQDTEMVIMTPSGDKLQMDISSLLIDYEGETAVLTILRDVTEKREMEQALRQSELQY
RLITENMSDLVCILERDGTVRYASPSHRTVLGFAAGYYEGKNTLDYIHPDDIHIVRGQLKEMKEQDVSLTLEFRHFHADQ
RWIWLETKIQAIYDESGHLLHYLTVSREIMQRKALEKQLKHLAYHDTLTDLPNRRFFLAYLEEAIDRTEFEQGELAVLAL
DVDRFKQINDTFGHDVGDELLRQLARRLTSVLRKQDMIARLGGDEFAVLIRFNDPCALHRVAEKIIQALQRPWEIDQHTF
ITTSSVGGARYVKGLSIKQLLKRADLALYEAKAGGRNQYALAKDHR

Sequences:

>Translated_686_residues
MKADQTLQSNASILLRTFDKISDYVFFMEVDGSAYRYVFVNEPGKRAINWSDADVGKTIDELVPTETAKLITQYYDEAIR
TKKSVVYEDYRLADSFYTDTVEADDVLTLPLHYFESEVTPIFNDEGNCTHIVSVVREVTERKRRELELSILKDHHESLRR
YSPHGIFVLDHHLNIKSVNPAVTVITGHKEQDMLHQPFLNWLPECERSRVRKGLQFTLSGIPHKYSIYAEHQSGERLDLT
VLNIPIEVGGNITGLFAIIIDLTPEKNAERATVESERRYRQLIETIPEGIIVHQEGQIIYANAMALATIGETYLESESIF
SFIAEEYHQSTRQRLASLELGGPVQDTEMVIMTPSGDKLQMDISSLLIDYEGETAVLTILRDVTEKREMEQALRQSELQY
RLITENMSDLVCILERDGTVRYASPSHRTVLGFAAGYYEGKNTLDYIHPDDIHIVRGQLKEMKEQDVSLTLEFRHFHADQ
RWIWLETKIQAIYDESGHLLHYLTVSREIMQRKALEKQLKHLAYHDTLTDLPNRRFFLAYLEEAIDRTEFEQGELAVLAL
DVDRFKQINDTFGHDVGDELLRQLARRLTSVLRKQDMIARLGGDEFAVLIRFNDPCALHRVAEKIIQALQRPWEIDQHTF
ITTSSVGGARYVKGLSIKQLLKRADLALYEAKAGGRNQYALAKDHR
>Mature_686_residues
MKADQTLQSNASILLRTFDKISDYVFFMEVDGSAYRYVFVNEPGKRAINWSDADVGKTIDELVPTETAKLITQYYDEAIR
TKKSVVYEDYRLADSFYTDTVEADDVLTLPLHYFESEVTPIFNDEGNCTHIVSVVREVTERKRRELELSILKDHHESLRR
YSPHGIFVLDHHLNIKSVNPAVTVITGHKEQDMLHQPFLNWLPECERSRVRKGLQFTLSGIPHKYSIYAEHQSGERLDLT
VLNIPIEVGGNITGLFAIIIDLTPEKNAERATVESERRYRQLIETIPEGIIVHQEGQIIYANAMALATIGETYLESESIF
SFIAEEYHQSTRQRLASLELGGPVQDTEMVIMTPSGDKLQMDISSLLIDYEGETAVLTILRDVTEKREMEQALRQSELQY
RLITENMSDLVCILERDGTVRYASPSHRTVLGFAAGYYEGKNTLDYIHPDDIHIVRGQLKEMKEQDVSLTLEFRHFHADQ
RWIWLETKIQAIYDESGHLLHYLTVSREIMQRKALEKQLKHLAYHDTLTDLPNRRFFLAYLEEAIDRTEFEQGELAVLAL
DVDRFKQINDTFGHDVGDELLRQLARRLTSVLRKQDMIARLGGDEFAVLIRFNDPCALHRVAEKIIQALQRPWEIDQHTF
ITTSSVGGARYVKGLSIKQLLKRADLALYEAKAGGRNQYALAKDHR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=39.2045454545455, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1787541, Length=221, Percent_Identity=33.0316742081448, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI1788381, Length=333, Percent_Identity=25.8258258258258, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI1786584, Length=204, Percent_Identity=36.2745098039216, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI145693134, Length=183, Percent_Identity=34.4262295081967, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=32.1212121212121, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87082007, Length=184, Percent_Identity=32.6086956521739, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=33.9506172839506, Blast_Score=83, Evalue=7e-17,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87081977, Length=191, Percent_Identity=28.7958115183246, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=28.8235294117647, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081974, Length=168, Percent_Identity=29.7619047619048, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787056, Length=151, Percent_Identity=32.4503311258278, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 78922; Mature: 78922

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKADQTLQSNASILLRTFDKISDYVFFMEVDGSAYRYVFVNEPGKRAINWSDADVGKTID
CCCCCCHHCCCHHHHHHHHHHCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHH
ELVPTETAKLITQYYDEAIRTKKSVVYEDYRLADSFYTDTVEADDVLTLPLHYFESEVTP
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCCC
IFNDEGNCTHIVSVVREVTERKRRELELSILKDHHESLRRYSPHGIFVLDHHLNIKSVNP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCC
AVTVITGHKEQDMLHQPFLNWLPECERSRVRKGLQFTLSGIPHKYSIYAEHQSGERLDLT
EEEEEECCCHHHHHHHHHHHHCCHHHHHHHHCCCEEEECCCCEEEEEEEECCCCCEEEEE
VLNIPIEVGGNITGLFAIIIDLTPEKNAERATVESERRYRQLIETIPEGIIVHQEGQIIY
EEEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEE
ANAMALATIGETYLESESIFSFIAEEYHQSTRQRLASLELGGPVQDTEMVIMTPSGDKLQ
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEE
MDISSLLIDYEGETAVLTILRDVTEKREMEQALRQSELQYRLITENMSDLVCILERDGTV
EEHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEEEEEECCCEE
RYASPSHRTVLGFAAGYYEGKNTLDYIHPDDIHIVRGQLKEMKEQDVSLTLEFRHFHADQ
EECCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHCCCEEEEEEEEECCCC
RWIWLETKIQAIYDESGHLLHYLTVSREIMQRKALEKQLKHLAYHDTLTDLPNRRFFLAY
EEEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LEEAIDRTEFEQGELAVLALDVDRFKQINDTFGHDVGDELLRQLARRLTSVLRKQDMIAR
HHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LGGDEFAVLIRFNDPCALHRVAEKIIQALQRPWEIDQHTFITTSSVGGARYVKGLSIKQL
CCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHCCCCHHHH
LKRADLALYEAKAGGRNQYALAKDHR
HHHHHHEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKADQTLQSNASILLRTFDKISDYVFFMEVDGSAYRYVFVNEPGKRAINWSDADVGKTID
CCCCCCHHCCCHHHHHHHHHHCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHH
ELVPTETAKLITQYYDEAIRTKKSVVYEDYRLADSFYTDTVEADDVLTLPLHYFESEVTP
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCCC
IFNDEGNCTHIVSVVREVTERKRRELELSILKDHHESLRRYSPHGIFVLDHHLNIKSVNP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCC
AVTVITGHKEQDMLHQPFLNWLPECERSRVRKGLQFTLSGIPHKYSIYAEHQSGERLDLT
EEEEEECCCHHHHHHHHHHHHCCHHHHHHHHCCCEEEECCCCEEEEEEEECCCCCEEEEE
VLNIPIEVGGNITGLFAIIIDLTPEKNAERATVESERRYRQLIETIPEGIIVHQEGQIIY
EEEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEE
ANAMALATIGETYLESESIFSFIAEEYHQSTRQRLASLELGGPVQDTEMVIMTPSGDKLQ
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEE
MDISSLLIDYEGETAVLTILRDVTEKREMEQALRQSELQYRLITENMSDLVCILERDGTV
EEHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEEEEEECCCEE
RYASPSHRTVLGFAAGYYEGKNTLDYIHPDDIHIVRGQLKEMKEQDVSLTLEFRHFHADQ
EECCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHCCCEEEEEEEEECCCC
RWIWLETKIQAIYDESGHLLHYLTVSREIMQRKALEKQLKHLAYHDTLTDLPNRRFFLAY
EEEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LEEAIDRTEFEQGELAVLALDVDRFKQINDTFGHDVGDELLRQLARRLTSVLRKQDMIAR
HHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LGGDEFAVLIRFNDPCALHRVAEKIIQALQRPWEIDQHTFITTSSVGGARYVKGLSIKQL
CCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHCCCCHHHH
LKRADLALYEAKAGGRNQYALAKDHR
HHHHHHEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]