| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is ycjT [H]
Identifier: 229916999
GI number: 229916999
Start: 1248303
End: 1250660
Strand: Direct
Name: ycjT [H]
Synonym: EAT1b_1273
Alternate gene names: 229916999
Gene position: 1248303-1250660 (Clockwise)
Preceding gene: 229916997
Following gene: 229917000
Centisome position: 41.61
GC content: 42.71
Gene sequence:
>2358_bases ATGGTGACGAATACATTGATGAACTATACGACTGGCAGAGAAAATCTACAACATTGGCTCGTATCTGAAGACGGGTTTCG CCCGGAATGGCTCGGGAAAGGTGAATCGGTATTTTCTCTCGGAAATGGATACATGGGGTTACGTTCTGTCACAGAAGAAC ATTATGCGAATGAAACACGCAACTTGTTCGTGGCGGGGACATTCAATAAGTTCGCTGAGAATGAAGTGACCGAACTTCCG AATGCAGCAGACCTAATCTGGATGGAGTTCAAATTAGACGGTATCCGTTTTGATTTGACACAGGGCAATATCCTTTCCTA CCGTCGTACGCTTAATTTGAAAGAAGCTGAGCTCGTACGTGACATCACATGGCAAAGTTCGAATGGCAATGTTTACGACC TTACTTTTCGACGCTTCGTTTCAATGGATAATCTGCACGTAATTGCTCAACGAGTGACCATAACGCCGAAACAAAACAGT GTCCTCTCACTTACTTCAGGTATTGATGGACAAACGACAAACAGTGGTGTCCAGCACTTCTTAGAAGGGAACAAACGACT TTATGACGGACGTTTTATGCAACAGATCCAAACGACGACTGAATCTGGAATCGATTTTGTCTTCCATAGCGTCCATCGTT TTTACCAACGTGAATCAATGAATCCGACATCCATTATCAAAATGGATCGCCGTCAAATTTTCTTTGACTACTCGGATATT GAGATTCCAGCGAATGAAGTATTTACGATTGAAAAATACTCGACCGTCTTCACTTCTCGTGATAAAGAGTTGAATGCTGT TACCACAGAGGAACTCGCAAACCACGCGTTAAATGTGACACGAAACGTTGAATCAAAAGGATACGAGAACTTGTTCATTG AACATATTCAAGCATGGGATGAACTCGTATGGTCTCGTACACCAATCAATATTAAATCTAAGGAAATGTTTGATCAATTA GCCATCCGATTTGCTCAATATCATCTTGCTGTTATGACACCGAAACATGACAATCGCATGAACGTTGGAGCAAAAGGCTT GTCTGGAGAAGGATATAAGGGGCATACATTCTGGGACACAGAAATTTTTATCTTGCCTTACTACACATATACGAACCCAA AAATTGCTCGCAGTTTGCTCGAGTATCGCTATCTTTCACTACCTGGGGCACATCGGAAAGCCAAAGAGAATGGATACGAT GGCGCAATGTTCCCATGGGAATCAGCATGGCTCGATGATGGTGAAGTCACGCCAGTCTGGGGTGCCGCAGACATCGTGAC GGGCGAGGCGACCAAAATTTGGTCCGGTTTTATCGAACAACACATCACCTCAGATGTCGCTTTCGCTGCTTGGCAATATT ACCACATCACCGGTGACCAAGAATTTATGGACCATTACGGTTATGAACTTTTGATTGATACAGCAAAATTCTGGGCGAGC CGACTCGAATGGAATGAGTCTGAAAATCGTTATGAAATCAATCAGGTCGTTGGACCAGATGAATATAAGGAACACGTCAA TAATAACGCGTTTACGAATTATACAGCTCACTGGAATATTCAAAAGGCAATTGAGTATGTAGAACTGTTACGTATTGAAA AACCGAATCTGTTCGAGCAATTGAACGCTAAGCTTGATTTAGAAACAGCCGAAGCAAGATTCCGACATGTCCTTGACTTA ATTTATTTGCCACAAGTGCGCGAAGACGGAGTATTGCCACAAGATGATACGTATTTGCAAAAAGAAATCATCGATTTGAG CAAATACAAAAATCAAGAAAACGTTGGCTCCATGTTCTATGACTATAATCTGGAACAAGTAAACGAGATTCAAGTATCAA AGCAGGCAGACGTGATGATTTTAATGTATCTGCTTGAAGATTTGTTCTCAGCAGATGTCAAACGAGCAAACTGGGAATAC TATGAGCCGAAGACATTACACGACTCCTCGCTCTCCCTTTCAACTCATAGCGTCCTTGCATCGGATCTTGGTAACCGCGA ACTTGCTTACAGCTTATTCCGTCGGGCCTCTGAAATTGATCTTGGACCAAACATGAAAACGTCTGATGCAGGTATTCATG CGGCTTCACTCGGTGGGATTTGGCAAGCTGTCATAAACGGTTTTGGCGGCGTACGTATGACCAGTGGAAACTTACGAATT TCTCCAATGTTGCCGGAAGCTTGGGATGAACTCACTTTCTCAATCAATTGGAAAGGTGAAACGCTCGACATTTATGCATC ACATGACAAAGTTGTACTTACGCGTCGTGCGCCTTCAATTGAGCCACTCACTGTCGAAATTTATGGAGAAAAGCAGACTA TTACGGAAACATTTACAAGTGAAGTGTTATCAGTATGA
Upstream 100 bases:
>100_bases CAATTGAAAGAAAATATAGCAAAATCACTATTGAATATCCGAAACGTTTCGGATAGAATGGTGACGAATCAAGAAAGCGC TTTATCATACAGGAGGTTAT
Downstream 100 bases:
>100_bases CCTATCGTCCTATCTACCATTTCGCACCAGCTTTTGGATGGATGAACGATCCTAATGGACTTTGTCAGTTCAACGGTGTC TACCATCTGTTTTATCAGTA
Product: glycoside hydrolase family 65 central catalytic
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 785; Mature: 785
Protein sequence:
>785_residues MVTNTLMNYTTGRENLQHWLVSEDGFRPEWLGKGESVFSLGNGYMGLRSVTEEHYANETRNLFVAGTFNKFAENEVTELP NAADLIWMEFKLDGIRFDLTQGNILSYRRTLNLKEAELVRDITWQSSNGNVYDLTFRRFVSMDNLHVIAQRVTITPKQNS VLSLTSGIDGQTTNSGVQHFLEGNKRLYDGRFMQQIQTTTESGIDFVFHSVHRFYQRESMNPTSIIKMDRRQIFFDYSDI EIPANEVFTIEKYSTVFTSRDKELNAVTTEELANHALNVTRNVESKGYENLFIEHIQAWDELVWSRTPINIKSKEMFDQL AIRFAQYHLAVMTPKHDNRMNVGAKGLSGEGYKGHTFWDTEIFILPYYTYTNPKIARSLLEYRYLSLPGAHRKAKENGYD GAMFPWESAWLDDGEVTPVWGAADIVTGEATKIWSGFIEQHITSDVAFAAWQYYHITGDQEFMDHYGYELLIDTAKFWAS RLEWNESENRYEINQVVGPDEYKEHVNNNAFTNYTAHWNIQKAIEYVELLRIEKPNLFEQLNAKLDLETAEARFRHVLDL IYLPQVREDGVLPQDDTYLQKEIIDLSKYKNQENVGSMFYDYNLEQVNEIQVSKQADVMILMYLLEDLFSADVKRANWEY YEPKTLHDSSLSLSTHSVLASDLGNRELAYSLFRRASEIDLGPNMKTSDAGIHAASLGGIWQAVINGFGGVRMTSGNLRI SPMLPEAWDELTFSINWKGETLDIYASHDKVVLTRRAPSIEPLTVEIYGEKQTITETFTSEVLSV
Sequences:
>Translated_785_residues MVTNTLMNYTTGRENLQHWLVSEDGFRPEWLGKGESVFSLGNGYMGLRSVTEEHYANETRNLFVAGTFNKFAENEVTELP NAADLIWMEFKLDGIRFDLTQGNILSYRRTLNLKEAELVRDITWQSSNGNVYDLTFRRFVSMDNLHVIAQRVTITPKQNS VLSLTSGIDGQTTNSGVQHFLEGNKRLYDGRFMQQIQTTTESGIDFVFHSVHRFYQRESMNPTSIIKMDRRQIFFDYSDI EIPANEVFTIEKYSTVFTSRDKELNAVTTEELANHALNVTRNVESKGYENLFIEHIQAWDELVWSRTPINIKSKEMFDQL AIRFAQYHLAVMTPKHDNRMNVGAKGLSGEGYKGHTFWDTEIFILPYYTYTNPKIARSLLEYRYLSLPGAHRKAKENGYD GAMFPWESAWLDDGEVTPVWGAADIVTGEATKIWSGFIEQHITSDVAFAAWQYYHITGDQEFMDHYGYELLIDTAKFWAS RLEWNESENRYEINQVVGPDEYKEHVNNNAFTNYTAHWNIQKAIEYVELLRIEKPNLFEQLNAKLDLETAEARFRHVLDL IYLPQVREDGVLPQDDTYLQKEIIDLSKYKNQENVGSMFYDYNLEQVNEIQVSKQADVMILMYLLEDLFSADVKRANWEY YEPKTLHDSSLSLSTHSVLASDLGNRELAYSLFRRASEIDLGPNMKTSDAGIHAASLGGIWQAVINGFGGVRMTSGNLRI SPMLPEAWDELTFSINWKGETLDIYASHDKVVLTRRAPSIEPLTVEIYGEKQTITETFTSEVLSV >Mature_785_residues MVTNTLMNYTTGRENLQHWLVSEDGFRPEWLGKGESVFSLGNGYMGLRSVTEEHYANETRNLFVAGTFNKFAENEVTELP NAADLIWMEFKLDGIRFDLTQGNILSYRRTLNLKEAELVRDITWQSSNGNVYDLTFRRFVSMDNLHVIAQRVTITPKQNS VLSLTSGIDGQTTNSGVQHFLEGNKRLYDGRFMQQIQTTTESGIDFVFHSVHRFYQRESMNPTSIIKMDRRQIFFDYSDI EIPANEVFTIEKYSTVFTSRDKELNAVTTEELANHALNVTRNVESKGYENLFIEHIQAWDELVWSRTPINIKSKEMFDQL AIRFAQYHLAVMTPKHDNRMNVGAKGLSGEGYKGHTFWDTEIFILPYYTYTNPKIARSLLEYRYLSLPGAHRKAKENGYD GAMFPWESAWLDDGEVTPVWGAADIVTGEATKIWSGFIEQHITSDVAFAAWQYYHITGDQEFMDHYGYELLIDTAKFWAS RLEWNESENRYEINQVVGPDEYKEHVNNNAFTNYTAHWNIQKAIEYVELLRIEKPNLFEQLNAKLDLETAEARFRHVLDL IYLPQVREDGVLPQDDTYLQKEIIDLSKYKNQENVGSMFYDYNLEQVNEIQVSKQADVMILMYLLEDLFSADVKRANWEY YEPKTLHDSSLSLSTHSVLASDLGNRELAYSLFRRASEIDLGPNMKTSDAGIHAASLGGIWQAVINGFGGVRMTSGNLRI SPMLPEAWDELTFSINWKGETLDIYASHDKVVLTRRAPSIEPLTVEIYGEKQTITETFTSEVLSV
Specific function: Unknown
COG id: COG1554
COG function: function code G; Trehalose and maltose hydrolases (possible phosphorylases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 65 family [H]
Homologues:
Organism=Homo sapiens, GI187829418, Length=533, Percent_Identity=28.3302063789869, Blast_Score=156, Evalue=7e-38, Organism=Escherichia coli, GI1787575, Length=757, Percent_Identity=37.3844121532365, Blast_Score=536, Evalue=1e-153, Organism=Saccharomyces cerevisiae, GI6325283, Length=239, Percent_Identity=30.9623430962343, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI24583760, Length=448, Percent_Identity=24.7767857142857, Blast_Score=103, Evalue=7e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR012341 - InterPro: IPR011013 - InterPro: IPR005194 - InterPro: IPR005195 - InterPro: IPR005196 - InterPro: IPR017045 [H]
Pfam domain/function: PF03633 Glyco_hydro_65C; PF03632 Glyco_hydro_65m; PF03636 Glyco_hydro_65N [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 90448; Mature: 90448
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: PS00063 ALDOKETO_REDUCTASE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTNTLMNYTTGRENLQHWLVSEDGFRPEWLGKGESVFSLGNGYMGLRSVTEEHYANETR CCCCCHHHCCCCHHHHHHHHCCCCCCCCHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCC NLFVAGTFNKFAENEVTELPNAADLIWMEFKLDGIRFDLTQGNILSYRRTLNLKEAELVR EEEEEECCHHHHCCHHHHCCCCCCEEEEEEEECCEEEEECCCCEEEHHHHCCCHHHHHHH DITWQSSNGNVYDLTFRRFVSMDNLHVIAQRVTITPKQNSVLSLTSGIDGQTTNSGVQHF HHEEECCCCCEEEEEHHHHHCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHH LEGNKRLYDGRFMQQIQTTTESGIDFVFHSVHRFYQRESMNPTSIIKMDRRQIFFDYSDI HCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEECCCEEEEECCCC EIPANEVFTIEKYSTVFTSRDKELNAVTTEELANHALNVTRNVESKGYENLFIEHIQAWD CCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH ELVWSRTPINIKSKEMFDQLAIRFAQYHLAVMTPKHDNRMNVGAKGLSGEGYKGHTFWDT HHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECC EIFILPYYTYTNPKIARSLLEYRYLSLPGAHRKAKENGYDGAMFPWESAWLDDGEVTPVW EEEEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEC GAADIVTGEATKIWSGFIEQHITSDVAFAAWQYYHITGDQEFMDHYGYELLIDTAKFWAS CCHHEECCCHHHHHHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHCCEEEEEEHHHHHHH RLEWNESENRYEINQVVGPDEYKEHVNNNAFTNYTAHWNIQKAIEYVELLRIEKPNLFEQ HHCCCCCCCCEEEEECCCCHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCHHHH LNAKLDLETAEARFRHVLDLIYLPQVREDGVLPQDDTYLQKEIIDLSKYKNQENVGSMFY CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEE DYNLEQVNEIQVSKQADVMILMYLLEDLFSADVKRANWEYYEPKTLHDSSLSLSTHSVLA ECCHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH SDLGNRELAYSLFRRASEIDLGPNMKTSDAGIHAASLGGIWQAVINGFGGVRMTSGNLRI HHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCEEE SPMLPEAWDELTFSINWKGETLDIYASHDKVVLTRRAPSIEPLTVEIYGEKQTITETFTS ECCCCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHH EVLSV HHHCC >Mature Secondary Structure MVTNTLMNYTTGRENLQHWLVSEDGFRPEWLGKGESVFSLGNGYMGLRSVTEEHYANETR CCCCCHHHCCCCHHHHHHHHCCCCCCCCHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCC NLFVAGTFNKFAENEVTELPNAADLIWMEFKLDGIRFDLTQGNILSYRRTLNLKEAELVR EEEEEECCHHHHCCHHHHCCCCCCEEEEEEEECCEEEEECCCCEEEHHHHCCCHHHHHHH DITWQSSNGNVYDLTFRRFVSMDNLHVIAQRVTITPKQNSVLSLTSGIDGQTTNSGVQHF HHEEECCCCCEEEEEHHHHHCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHH LEGNKRLYDGRFMQQIQTTTESGIDFVFHSVHRFYQRESMNPTSIIKMDRRQIFFDYSDI HCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEECCCEEEEECCCC EIPANEVFTIEKYSTVFTSRDKELNAVTTEELANHALNVTRNVESKGYENLFIEHIQAWD CCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH ELVWSRTPINIKSKEMFDQLAIRFAQYHLAVMTPKHDNRMNVGAKGLSGEGYKGHTFWDT HHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECC EIFILPYYTYTNPKIARSLLEYRYLSLPGAHRKAKENGYDGAMFPWESAWLDDGEVTPVW EEEEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEC GAADIVTGEATKIWSGFIEQHITSDVAFAAWQYYHITGDQEFMDHYGYELLIDTAKFWAS CCHHEECCCHHHHHHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHCCEEEEEEHHHHHHH RLEWNESENRYEINQVVGPDEYKEHVNNNAFTNYTAHWNIQKAIEYVELLRIEKPNLFEQ HHCCCCCCCCEEEEECCCCHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCHHHH LNAKLDLETAEARFRHVLDLIYLPQVREDGVLPQDDTYLQKEIIDLSKYKNQENVGSMFY CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEE DYNLEQVNEIQVSKQADVMILMYLLEDLFSADVKRANWEYYEPKTLHDSSLSLSTHSVLA ECCHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH SDLGNRELAYSLFRRASEIDLGPNMKTSDAGIHAASLGGIWQAVINGFGGVRMTSGNLRI HHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCEEE SPMLPEAWDELTFSINWKGETLDIYASHDKVVLTRRAPSIEPLTVEIYGEKQTITETFTS ECCCCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHH EVLSV HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]