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The map label for this gene is araQ [H]

Identifier: 229916994

GI number: 229916994

Start: 1243047

End: 1243871

Strand: Reverse

Name: araQ [H]

Synonym: EAT1b_1268

Alternate gene names: 229916994

Gene position: 1243871-1243047 (Counterclockwise)

Preceding gene: 229916995

Following gene: 229916993

Centisome position: 41.46

GC content: 44.97

Gene sequence:

>825_bases
ATGAAAAAGAAAAAATGGCCGCGTATTGTCATGTATGTCATCCTCGTCTCTTACGCGCTCGTCACACTGTATCCATTCCT
ATGGGCAGTGCTCGCATCGTTCAAACCATATAGCGAGATTGTAGCTGGAGGACTTACGCTTTGGCCAGAGAACCCGACGC
TCGCAAACTTTGAACACATCTTTACGAAAGATCCGCTTTTTCCACGTTGGATTATGAACTCCTTCTTAATTGCAACATTA
GGAACTATTGTGAACGTTATTTTTAACACGATGGCAGGTTATTCGCTTGCGCGTCTTCGGTTCCCGGGACGCAACTATTT
ATTCCTGTTGATCTTGGCTGTCATGATGGTACCGGGGCAAATCTTGCTCATCCCGAACTACTTAATCATGCGTTCGCTTG
GAATTCTCGACACATATTCTGCGTTGATCATTCCCGGAGCCATCAACTTCTCCTACATCTTCTTGATGAGACAGTTCTTT
ATCAACTTCCCACGCGAAGTAGAAGAAGCTGCACAAGTAGACGGACTAAATCGATTCCAAACGTTTTGGCGTATTGTCTT
CCCGATGGCGCGTGCATCGGTTGCAACACAGGCTGTCTTCGTGTTCCTCGGGTTCTGGAATGAGTTCTTAAAACCGCTCC
TTTACATCACATCACCCGAAAAATATACGCTTACGCTCGGACTTCAGTCATTTCAAAGTCAGAATGCCACGCAGTGGAAC
TACATCATGGCGGCTTCTGTCGTCAGTATCATCCCAATCATCATTTTGTACATCATGCTGAATAAGTACTTCATGCAAGG
TTTACGAATTGGTGGAGATAAATAA

Upstream 100 bases:

>100_bases
GTCAGCACTGGCAATTATTTTGACAATCATCATCTTCACGGTTTCGATGATTGCTCGTAAGTTGAATAAAGAAGAATCGA
ACTATTAAGGAGGAATGGAT

Downstream 100 bases:

>100_bases
GGAGAATGAAAATGAAAGCTTTTATTTTTGATTTAGACGGTGTCATCACCGACACTGCCGAATATCATTACTTAGCATGG
AAAGCGCTCGGAGAAGATTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MKKKKWPRIVMYVILVSYALVTLYPFLWAVLASFKPYSEIVAGGLTLWPENPTLANFEHIFTKDPLFPRWIMNSFLIATL
GTIVNVIFNTMAGYSLARLRFPGRNYLFLLILAVMMVPGQILLIPNYLIMRSLGILDTYSALIIPGAINFSYIFLMRQFF
INFPREVEEAAQVDGLNRFQTFWRIVFPMARASVATQAVFVFLGFWNEFLKPLLYITSPEKYTLTLGLQSFQSQNATQWN
YIMAASVVSIIPIIILYIMLNKYFMQGLRIGGDK

Sequences:

>Translated_274_residues
MKKKKWPRIVMYVILVSYALVTLYPFLWAVLASFKPYSEIVAGGLTLWPENPTLANFEHIFTKDPLFPRWIMNSFLIATL
GTIVNVIFNTMAGYSLARLRFPGRNYLFLLILAVMMVPGQILLIPNYLIMRSLGILDTYSALIIPGAINFSYIFLMRQFF
INFPREVEEAAQVDGLNRFQTFWRIVFPMARASVATQAVFVFLGFWNEFLKPLLYITSPEKYTLTLGLQSFQSQNATQWN
YIMAASVVSIIPIIILYIMLNKYFMQGLRIGGDK
>Mature_274_residues
MKKKKWPRIVMYVILVSYALVTLYPFLWAVLASFKPYSEIVAGGLTLWPENPTLANFEHIFTKDPLFPRWIMNSFLIATL
GTIVNVIFNTMAGYSLARLRFPGRNYLFLLILAVMMVPGQILLIPNYLIMRSLGILDTYSALIIPGAINFSYIFLMRQFF
INFPREVEEAAQVDGLNRFQTFWRIVFPMARASVATQAVFVFLGFWNEFLKPLLYITSPEKYTLTLGLQSFQSQNATQWN
YIMAASVVSIIPIIILYIMLNKYFMQGLRIGGDK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=278, Percent_Identity=33.0935251798561, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1789860, Length=275, Percent_Identity=29.0909090909091, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1790464, Length=219, Percent_Identity=27.8538812785388, Blast_Score=91, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31553; Mature: 31553

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKKWPRIVMYVILVSYALVTLYPFLWAVLASFKPYSEIVAGGLTLWPENPTLANFEHI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCEEECCCCCCCCCHHHH
FTKDPLFPRWIMNSFLIATLGTIVNVIFNTMAGYSLARLRFPGRNYLFLLILAVMMVPGQ
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCCCHHHHHHHHHHHCCCC
ILLIPNYLIMRSLGILDTYSALIIPGAINFSYIFLMRQFFINFPREVEEAAQVDGLNRFQ
EEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHH
TFWRIVFPMARASVATQAVFVFLGFWNEFLKPLLYITSPEKYTLTLGLQSFQSQNATQWN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEHHHHHCCCCCHHH
YIMAASVVSIIPIIILYIMLNKYFMQGLRIGGDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKKKWPRIVMYVILVSYALVTLYPFLWAVLASFKPYSEIVAGGLTLWPENPTLANFEHI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCEEECCCCCCCCCHHHH
FTKDPLFPRWIMNSFLIATLGTIVNVIFNTMAGYSLARLRFPGRNYLFLLILAVMMVPGQ
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCCCHHHHHHHHHHHCCCC
ILLIPNYLIMRSLGILDTYSALIIPGAINFSYIFLMRQFFINFPREVEEAAQVDGLNRFQ
EEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHH
TFWRIVFPMARASVATQAVFVFLGFWNEFLKPLLYITSPEKYTLTLGLQSFQSQNATQWN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEHHHHHCCCCCHHH
YIMAASVVSIIPIIILYIMLNKYFMQGLRIGGDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]