| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is yesP [H]
Identifier: 229916995
GI number: 229916995
Start: 1243884
End: 1244849
Strand: Reverse
Name: yesP [H]
Synonym: EAT1b_1269
Alternate gene names: 229916995
Gene position: 1244849-1243884 (Counterclockwise)
Preceding gene: 229916996
Following gene: 229916994
Centisome position: 41.5
GC content: 42.34
Gene sequence:
>966_bases ATGGGCACACAGCTCGAAATCAACCGACGTACGGACACAGCATCACAGGCACCATCACCTAAGAAAAAGAAAGGTAGTGA ACGTGATCGCCGTGAAGCTGTACAAGGCATGACATTTATGCTGCCGACGATAATCATTTTAGTGACGTTCACGTTGCTTC CGACTGCGTATTCACTTTTCTTATCATTTACACGCGTGAATTTGTTTGGCGGCATCGATTTCCAATGGGTCGGCTTTGAA AATTACATCAACGCATGGAACGATGATCGGGTCTGGACGGCTTTAAAAAATACGTTTCGTTATGCTCTTTTTGTTGTACC GATTCAGACGGCAATTGCACTTCTTATGGCGGCTGTCTTAAATTCCGGGATTCGTTTTCAAAATACATTCCGTACCATTT ATTTCTTGCCGACGCTGACTTCAAGTTCAGCACTCACCATGATTTTCATGTTTTTATTCAGTCTAAATGGACCGATCAAC AATGTTCTTGTCAGTTTTGGGTTGTTAGATGCACCAATCAATTTCATCAATGAGACCGATTTTGCCCTCACGACCATTAT GGTCATGAATATTTGGTCTACTGTCCCATTCTTCATGACAATCTATTTAGCGGGTCTCCAGGATATCCCGTCATCACTTT ACGAGGCGGCATCGCTTGATGGAGCGAATGCATGGCAAAAGCTAATGAAAATTACAGTTCCAAACCTTACGCCTGTAACG AACTATGTCCTGTTGATGGGAATCATCGGTTGTTTCCAATTATTTGACCAAGCATATATCATCTCAGGAGGAACCGGTGG GCCGAACAACGCAACACTTACATTCTCGCTTATCATTTATCAGTATGCGTTTAAGACCATTGGAACGATGGGATATGCGT CAGCACTGGCAATTATTTTGACAATCATCATCTTCACGGTTTCGATGATTGCTCGTAAGTTGAATAAAGAAGAATCGAAC TATTAA
Upstream 100 bases:
>100_bases ACTGCGAATAAAGATATCGAGACGCAATTGAAATGAAGAAACAATTGGGCTCGCGTAATCGCGCGGGCCTCGTTTTGTTC GGGAAGGAAGGATCGATCAT
Downstream 100 bases:
>100_bases GGAGGAATGGATATGAAAAAGAAAAAATGGCCGCGTATTGTCATGTATGTCATCCTCGTCTCTTACGCGCTCGTCACACT GTATCCATTCCTATGGGCAG
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MGTQLEINRRTDTASQAPSPKKKKGSERDRREAVQGMTFMLPTIIILVTFTLLPTAYSLFLSFTRVNLFGGIDFQWVGFE NYINAWNDDRVWTALKNTFRYALFVVPIQTAIALLMAAVLNSGIRFQNTFRTIYFLPTLTSSSALTMIFMFLFSLNGPIN NVLVSFGLLDAPINFINETDFALTTIMVMNIWSTVPFFMTIYLAGLQDIPSSLYEAASLDGANAWQKLMKITVPNLTPVT NYVLLMGIIGCFQLFDQAYIISGGTGGPNNATLTFSLIIYQYAFKTIGTMGYASALAIILTIIIFTVSMIARKLNKEESN Y
Sequences:
>Translated_321_residues MGTQLEINRRTDTASQAPSPKKKKGSERDRREAVQGMTFMLPTIIILVTFTLLPTAYSLFLSFTRVNLFGGIDFQWVGFE NYINAWNDDRVWTALKNTFRYALFVVPIQTAIALLMAAVLNSGIRFQNTFRTIYFLPTLTSSSALTMIFMFLFSLNGPIN NVLVSFGLLDAPINFINETDFALTTIMVMNIWSTVPFFMTIYLAGLQDIPSSLYEAASLDGANAWQKLMKITVPNLTPVT NYVLLMGIIGCFQLFDQAYIISGGTGGPNNATLTFSLIIYQYAFKTIGTMGYASALAIILTIIIFTVSMIARKLNKEESN Y >Mature_320_residues GTQLEINRRTDTASQAPSPKKKKGSERDRREAVQGMTFMLPTIIILVTFTLLPTAYSLFLSFTRVNLFGGIDFQWVGFEN YINAWNDDRVWTALKNTFRYALFVVPIQTAIALLMAAVLNSGIRFQNTFRTIYFLPTLTSSSALTMIFMFLFSLNGPINN VLVSFGLLDAPINFINETDFALTTIMVMNIWSTVPFFMTIYLAGLQDIPSSLYEAASLDGANAWQKLMKITVPNLTPVTN YVLLMGIIGCFQLFDQAYIISGGTGGPNNATLTFSLIIYQYAFKTIGTMGYASALAIILTIIIFTVSMIARKLNKEESNY
Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787570, Length=263, Percent_Identity=30.7984790874525, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1789861, Length=282, Percent_Identity=25.886524822695, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1790465, Length=266, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 35837; Mature: 35706
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTQLEINRRTDTASQAPSPKKKKGSERDRREAVQGMTFMLPTIIILVTFTLLPTAYSLF CCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSFTRVNLFGGIDFQWVGFENYINAWNDDRVWTALKNTFRYALFVVPIQTAIALLMAAVL HHHHHHHHCCCCCEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NSGIRFQNTFRTIYFLPTLTSSSALTMIFMFLFSLNGPINNVLVSFGLLDAPINFINETD HCCCCEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCH FALTTIMVMNIWSTVPFFMTIYLAGLQDIPSSLYEAASLDGANAWQKLMKITVPNLTPVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHH NYVLLMGIIGCFQLFDQAYIISGGTGGPNNATLTFSLIIYQYAFKTIGTMGYASALAIIL HHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH TIIIFTVSMIARKLNKEESNY HHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure GTQLEINRRTDTASQAPSPKKKKGSERDRREAVQGMTFMLPTIIILVTFTLLPTAYSLF CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSFTRVNLFGGIDFQWVGFENYINAWNDDRVWTALKNTFRYALFVVPIQTAIALLMAAVL HHHHHHHHCCCCCEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NSGIRFQNTFRTIYFLPTLTSSSALTMIFMFLFSLNGPINNVLVSFGLLDAPINFINETD HCCCCEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCH FALTTIMVMNIWSTVPFFMTIYLAGLQDIPSSLYEAASLDGANAWQKLMKITVPNLTPVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHH NYVLLMGIIGCFQLFDQAYIISGGTGGPNNATLTFSLIIYQYAFKTIGTMGYASALAIIL HHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH TIIIFTVSMIARKLNKEESNY HHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]