| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is yvrG [H]
Identifier: 229916896
GI number: 229916896
Start: 1136837
End: 1138213
Strand: Direct
Name: yvrG [H]
Synonym: EAT1b_1169
Alternate gene names: 229916896
Gene position: 1136837-1138213 (Clockwise)
Preceding gene: 229916895
Following gene: 229916898
Centisome position: 37.9
GC content: 52.58
Gene sequence:
>1377_bases ATGATGAAATGGAAACTGACCGGTCGCTATTTGTTGTCAATCCTCCTCATTGTGGCGCTCGTTGTCTTCTTAAACATTAC GATTTTGTTCGGGCTCCTCGTCAATGACCGGACGGGACTTGACGATGTGGAAAGCAACTCGGGCGAGACCTTTACCCGAA ACTTCAGTACGTATCTTTCACTCGAGGATGGCGAACCGGTCGTGTCAGAAGCGGGGCGCGAGGCCCTTCGCCAATCGGGT GCATTCGTCCGCTTTTTAGATGAGACGGGACGAGTCGTCAGCGAGGTCGACGCTCCAAGCGGATTACCGGACGCCTATTC TCCGATTGAGTTGATTCAAATCTATAAATACATGGATGACGACCTCCGACTCTACTTCATCGGGGAATATGAATCGTACA GTTATCTCATCGGTGTGCCGGAGGCAAGTGAACGTCGAATACTCTTTATGTTAGACGAACAGGCGGTTCTTTCGTATATC ACGAAGGCGTTCCTCTGGATACTTGTTGTCGATTTGCTCGTCGCCGCTTTGATCGGTGTATTGTTCAGCTCACGATTGAC GCGCCCCGTCTACCGCTTGACCGAGCGTATTCAACAACTGAAGCAACGCGACTTCTCGACCGCTGAACCGAAGCAATCTG GGATTTATCGCCCTGTCTTCCACGACTTGAATGCCGTCTCACAGACACTCAAAACGTATGAACGTCAGCGTGCAGAACTC GATGACCGGCGGAAAGAGTGGATGAGCAACGTATCACACGACTTGAAGACCCCGCTCGCCTCCATCCAAGGGTACGCCGA ACTGCTCGACGATGATTCGCTCGACGACACCGAGCGCAGACAATACGTACATGTGATCGAGCGTCAGGCTAAGTATATGA AGGAACTGCTCGACGATTTCAATTTGACGATGCGTCTGCAGCACGACGACTTCCCGCTTACCCTCGAAGAGACAAACCTC GAGCCGTTCGTCCGTGAGCTCGTGATTGACGTATTGAACGATTCTCGTTTCGGCGAACGCCACATCGAGTTTGAGGCCAC TCAAGCAGCGACCGTCTCGCTCGATCGGCACTTTATGAAGCGGGCCTTGCTCAACTTCTTGTATAACGCCCTTCTCCATA ACGACGAGTCGGTGCAGGTGACAGTCCACATCGAGGGTGACATCGTGACGATTGGAGATGATGGACATGGGATTGCTGAA TCCGAATTGCCCTATATCTTTGAACGCTATTACCGGGGCACGAATACAGACGACGCACGCGGAAGTGGTCTCGGCATGGC CATCTCACGGGACATCATCGAAGCCCACGGCGGGAAGGTCGAAGTCGACAGTGCACCGGGACACGGCACTTCGATTCGAA TCACATTCATGCCATAA
Upstream 100 bases:
>100_bases CGACGTCTCCGTGAAAAAGTCGAACCGAATCCATCCGAGCCGACTTATATCAAGACGGTCAAGGGACTTGGCTATCGGTT GACGGTATAAAGGAGCGATC
Downstream 100 bases:
>100_bases CAAAAGGGACGCTCAGGCGTCCCTTGTCTGTGTCGTATAGTCAGCAATCCATGTTTCTAGTTCTTCAAGCGGTAACGGTC TAGAGAAATAATACCCCTGC
Product: histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 458; Mature: 458
Protein sequence:
>458_residues MMKWKLTGRYLLSILLIVALVVFLNITILFGLLVNDRTGLDDVESNSGETFTRNFSTYLSLEDGEPVVSEAGREALRQSG AFVRFLDETGRVVSEVDAPSGLPDAYSPIELIQIYKYMDDDLRLYFIGEYESYSYLIGVPEASERRILFMLDEQAVLSYI TKAFLWILVVDLLVAALIGVLFSSRLTRPVYRLTERIQQLKQRDFSTAEPKQSGIYRPVFHDLNAVSQTLKTYERQRAEL DDRRKEWMSNVSHDLKTPLASIQGYAELLDDDSLDDTERRQYVHVIERQAKYMKELLDDFNLTMRLQHDDFPLTLEETNL EPFVRELVIDVLNDSRFGERHIEFEATQAATVSLDRHFMKRALLNFLYNALLHNDESVQVTVHIEGDIVTIGDDGHGIAE SELPYIFERYYRGTNTDDARGSGLGMAISRDIIEAHGGKVEVDSAPGHGTSIRITFMP
Sequences:
>Translated_458_residues MMKWKLTGRYLLSILLIVALVVFLNITILFGLLVNDRTGLDDVESNSGETFTRNFSTYLSLEDGEPVVSEAGREALRQSG AFVRFLDETGRVVSEVDAPSGLPDAYSPIELIQIYKYMDDDLRLYFIGEYESYSYLIGVPEASERRILFMLDEQAVLSYI TKAFLWILVVDLLVAALIGVLFSSRLTRPVYRLTERIQQLKQRDFSTAEPKQSGIYRPVFHDLNAVSQTLKTYERQRAEL DDRRKEWMSNVSHDLKTPLASIQGYAELLDDDSLDDTERRQYVHVIERQAKYMKELLDDFNLTMRLQHDDFPLTLEETNL EPFVRELVIDVLNDSRFGERHIEFEATQAATVSLDRHFMKRALLNFLYNALLHNDESVQVTVHIEGDIVTIGDDGHGIAE SELPYIFERYYRGTNTDDARGSGLGMAISRDIIEAHGGKVEVDSAPGHGTSIRITFMP >Mature_458_residues MMKWKLTGRYLLSILLIVALVVFLNITILFGLLVNDRTGLDDVESNSGETFTRNFSTYLSLEDGEPVVSEAGREALRQSG AFVRFLDETGRVVSEVDAPSGLPDAYSPIELIQIYKYMDDDLRLYFIGEYESYSYLIGVPEASERRILFMLDEQAVLSYI TKAFLWILVVDLLVAALIGVLFSSRLTRPVYRLTERIQQLKQRDFSTAEPKQSGIYRPVFHDLNAVSQTLKTYERQRAEL DDRRKEWMSNVSHDLKTPLASIQGYAELLDDDSLDDTERRQYVHVIERQAKYMKELLDDFNLTMRLQHDDFPLTLEETNL EPFVRELVIDVLNDSRFGERHIEFEATQAATVSLDRHFMKRALLNFLYNALLHNDESVQVTVHIEGDIVTIGDDGHGIAE SELPYIFERYYRGTNTDDARGSGLGMAISRDIIEAHGGKVEVDSAPGHGTSIRITFMP
Specific function: Member of the two-component regulatory system YvrG/YvrH that positively regulates 7 transcriptional units (wprA, wapA- yxxG, dltABCDE, sunA, sunT-bdbA-yolJ-bdbB, sigO-rsoA, and sigX- rsiX), and negatively regulates the lytABC operon. Probably activates yv
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1786600, Length=231, Percent_Identity=28.5714285714286, Blast_Score=103, Evalue=3e-23, Organism=Escherichia coli, GI1788393, Length=279, Percent_Identity=27.9569892473118, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1790436, Length=242, Percent_Identity=26.8595041322314, Blast_Score=85, Evalue=8e-18, Organism=Escherichia coli, GI1788549, Length=241, Percent_Identity=26.1410788381743, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1786912, Length=229, Percent_Identity=27.0742358078603, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI87082128, Length=300, Percent_Identity=25, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788713, Length=232, Percent_Identity=26.7241379310345, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI48994928, Length=231, Percent_Identity=27.7056277056277, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1789808, Length=225, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787894, Length=218, Percent_Identity=25.6880733944954, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790861, Length=282, Percent_Identity=24.113475177305, Blast_Score=69, Evalue=8e-13, Organism=Escherichia coli, GI1790346, Length=227, Percent_Identity=26.431718061674, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1790300, Length=219, Percent_Identity=26.027397260274, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI1789403, Length=306, Percent_Identity=24.1830065359477, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI87081816, Length=320, Percent_Identity=24.0625, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 52320; Mature: 52320
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKWKLTGRYLLSILLIVALVVFLNITILFGLLVNDRTGLDDVESNSGETFTRNFSTYLS CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEEEEE LEDGEPVVSEAGREALRQSGAFVRFLDETGRVVSEVDAPSGLPDAYSPIELIQIYKYMDD ECCCCHHHHHHHHHHHHHCCCEEEEHHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC DLRLYFIGEYESYSYLIGVPEASERRILFMLDEQAVLSYITKAFLWILVVDLLVAALIGV CEEEEEEECCCCCEEEEECCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFSSRLTRPVYRLTERIQQLKQRDFSTAEPKQSGIYRPVFHDLNAVSQTLKTYERQRAEL HHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH DDRRKEWMSNVSHDLKTPLASIQGYAELLDDDSLDDTERRQYVHVIERQAKYMKELLDDF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC NLTMRLQHDDFPLTLEETNLEPFVRELVIDVLNDSRFGERHIEFEATQAATVSLDRHFMK CEEEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHH RALLNFLYNALLHNDESVQVTVHIEGDIVTIGDDGHGIAESELPYIFERYYRGTNTDDAR HHHHHHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC GSGLGMAISRDIIEAHGGKVEVDSAPGHGTSIRITFMP CCCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECC >Mature Secondary Structure MMKWKLTGRYLLSILLIVALVVFLNITILFGLLVNDRTGLDDVESNSGETFTRNFSTYLS CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEEEEE LEDGEPVVSEAGREALRQSGAFVRFLDETGRVVSEVDAPSGLPDAYSPIELIQIYKYMDD ECCCCHHHHHHHHHHHHHCCCEEEEHHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC DLRLYFIGEYESYSYLIGVPEASERRILFMLDEQAVLSYITKAFLWILVVDLLVAALIGV CEEEEEEECCCCCEEEEECCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFSSRLTRPVYRLTERIQQLKQRDFSTAEPKQSGIYRPVFHDLNAVSQTLKTYERQRAEL HHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH DDRRKEWMSNVSHDLKTPLASIQGYAELLDDDSLDDTERRQYVHVIERQAKYMKELLDDF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC NLTMRLQHDDFPLTLEETNLEPFVRELVIDVLNDSRFGERHIEFEATQAATVSLDRHFMK CEEEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHH RALLNFLYNALLHNDESVQVTVHIEGDIVTIGDDGHGIAESELPYIFERYYRGTNTDDAR HHHHHHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC GSGLGMAISRDIIEAHGGKVEVDSAPGHGTSIRITFMP CCCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9639930; 9384377 [H]