| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is pgk
Identifier: 229916591
GI number: 229916591
Start: 816628
End: 817812
Strand: Reverse
Name: pgk
Synonym: EAT1b_0863
Alternate gene names: 229916591
Gene position: 817812-816628 (Counterclockwise)
Preceding gene: 229916592
Following gene: 229916590
Centisome position: 27.26
GC content: 52.15
Gene sequence:
>1185_bases ATGAACAAACAGTCTATTCGTGACATCGATGTAAAAGGGAAACGCGTCTTTTGCCGCGTTGACTTCAACGTTCCACTCAA AGATGGCGTCATCCAAGACGAAACTCGGATCCAAGCCGCACTTCCAACGATCAAGCACTTGCTTGACGGTGGTGCGAAAC TCGTCCTTGCGAGCCACCTCGGCCGTCCAAAAGGCGAGAAGAAACCTGAGTTCTCACTTGCTCCGGTAGCGAAGCGTCTC GCTGAGCTCCTCGGAAAAGATGTACCGCTCGTCGAAGAAGCATACGGTCCGGTCGCAGAAGAAGCGGTCGCTAACCTCTC TGAAGGCGATGTCGTCGTTTTAGAGAACGTTCGTTTCTACCCAGGTGAAACGAAAAACGACCCTGAACTTGCAAAAGGAT TTGCAGCACTTGCTGACGTATACGTCAACGACGCGTTCGGCGCGGCTCACCGTGCACACGCTTCAACTGAAGGGATTGCA CACCACGTGGACACAGCCGTTGCTGGTCTCTTGATGGAAAAAGAACTTGAAGTTCTCGGTAAAGCTCTTTCAAACCCAGA CCGTCCGTTCACGGCGATTATCGGCGGGTCGAAAGTAGCGGATAAGATTGGGGTCATCGACCACCTTCTTGACATCGTTG ACACACTCATCATCGGTGGCGGACTCTCGTACACGTTCTCGAAAGCACTCGGGCACGAAGTCGGAACGTCACTCCTTGAA GAGGATAAGCTTGACCTCGCTCGTCAATTCATGAAGAAAGCAGAAGACAAAGGCGTGAAATTCTTGATGCCTGTCGACTG CGTCATCACGAAAGAATTTGGCGAAGAAACGTATGTCGGGCCAGTCGATATCGACTCGATCCCAGCGGATCACATGGGTC TCGATATCGGACCGAAGACAGTCGAACTTTACGCGGACGCGATTCGCGAATCGAAACTTGTCGTATGGAACGGACCGATG GGCGTATTCGAACTCGATAAATACGCAAACGGAACGAAAGGTGTCGCTCAAGCGCTTGCGGACAGCGATGCATACTCAAT CATCGGTGGTGGCGACTCAGCAGCTGCGGCAGCCAAGTTTGGTCTTGCTGACAAGATGAGTCACATCTCAACTGGTGGCG GCGCGTCACTCGAATTCATGGAAGGCAAAAAACTTCCAGGTGTCGAGGCGTTGAACGACAAGTAA
Upstream 100 bases:
>100_bases TAATTTCGTGAACTAAATAGAATCAAATAGGAGCGGAAACAAGAGATTGTTCTCCGCTCTATTTATGAAATGACACGCAC GACATATGGAGGCGAAAGTT
Downstream 100 bases:
>100_bases TTTAGAGGAGGGTTATCGATGCGTAAACCGATTATTGCAGGTAACTGGAAAATGAACAAAACACTCTCGGAAGCTGTTGC TTTCGTTGAGGAAGTAAAAA
Product: phosphoglycerate kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 394; Mature: 394
Protein sequence:
>394_residues MNKQSIRDIDVKGKRVFCRVDFNVPLKDGVIQDETRIQAALPTIKHLLDGGAKLVLASHLGRPKGEKKPEFSLAPVAKRL AELLGKDVPLVEEAYGPVAEEAVANLSEGDVVVLENVRFYPGETKNDPELAKGFAALADVYVNDAFGAAHRAHASTEGIA HHVDTAVAGLLMEKELEVLGKALSNPDRPFTAIIGGSKVADKIGVIDHLLDIVDTLIIGGGLSYTFSKALGHEVGTSLLE EDKLDLARQFMKKAEDKGVKFLMPVDCVITKEFGEETYVGPVDIDSIPADHMGLDIGPKTVELYADAIRESKLVVWNGPM GVFELDKYANGTKGVAQALADSDAYSIIGGGDSAAAAAKFGLADKMSHISTGGGASLEFMEGKKLPGVEALNDK
Sequences:
>Translated_394_residues MNKQSIRDIDVKGKRVFCRVDFNVPLKDGVIQDETRIQAALPTIKHLLDGGAKLVLASHLGRPKGEKKPEFSLAPVAKRL AELLGKDVPLVEEAYGPVAEEAVANLSEGDVVVLENVRFYPGETKNDPELAKGFAALADVYVNDAFGAAHRAHASTEGIA HHVDTAVAGLLMEKELEVLGKALSNPDRPFTAIIGGSKVADKIGVIDHLLDIVDTLIIGGGLSYTFSKALGHEVGTSLLE EDKLDLARQFMKKAEDKGVKFLMPVDCVITKEFGEETYVGPVDIDSIPADHMGLDIGPKTVELYADAIRESKLVVWNGPM GVFELDKYANGTKGVAQALADSDAYSIIGGGDSAAAAAKFGLADKMSHISTGGGASLEFMEGKKLPGVEALNDK >Mature_394_residues MNKQSIRDIDVKGKRVFCRVDFNVPLKDGVIQDETRIQAALPTIKHLLDGGAKLVLASHLGRPKGEKKPEFSLAPVAKRL AELLGKDVPLVEEAYGPVAEEAVANLSEGDVVVLENVRFYPGETKNDPELAKGFAALADVYVNDAFGAAHRAHASTEGIA HHVDTAVAGLLMEKELEVLGKALSNPDRPFTAIIGGSKVADKIGVIDHLLDIVDTLIIGGGLSYTFSKALGHEVGTSLLE EDKLDLARQFMKKAEDKGVKFLMPVDCVITKEFGEETYVGPVDIDSIPADHMGLDIGPKTVELYADAIRESKLVVWNGPM GVFELDKYANGTKGVAQALADSDAYSIIGGGDSAAAAAKFGLADKMSHISTGGGASLEFMEGKKLPGVEALNDK
Specific function: Second phase of glycolysis; second step. [C]
COG id: COG0126
COG function: function code G; 3-phosphoglycerate kinase
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate kinase family
Homologues:
Organism=Homo sapiens, GI4505763, Length=414, Percent_Identity=48.5507246376812, Blast_Score=370, Evalue=1e-103, Organism=Homo sapiens, GI31543397, Length=413, Percent_Identity=47.2154963680387, Blast_Score=357, Evalue=1e-98, Organism=Escherichia coli, GI1789294, Length=395, Percent_Identity=47.8481012658228, Blast_Score=347, Evalue=6e-97, Organism=Caenorhabditis elegans, GI17508823, Length=414, Percent_Identity=48.0676328502416, Blast_Score=362, Evalue=1e-100, Organism=Saccharomyces cerevisiae, GI6319857, Length=413, Percent_Identity=48.6682808716707, Blast_Score=365, Evalue=1e-102, Organism=Drosophila melanogaster, GI17136394, Length=412, Percent_Identity=48.0582524271845, Blast_Score=349, Evalue=2e-96, Organism=Drosophila melanogaster, GI24581203, Length=415, Percent_Identity=47.9518072289157, Blast_Score=348, Evalue=4e-96,
Paralogues:
None
Copy number: 2990 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1460 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]
Swissprot (AC and ID): PGK_EXISA (C4L5H7)
Other databases:
- EMBL: CP001615 - RefSeq: YP_002885237.1 - GeneID: 7869028 - GenomeReviews: CP001615_GR - KEGG: eat:EAT1b_0863 - OMA: DCIGDEV - ProtClustDB: PRK00073 - GO: GO:0005737 - GO: GO:0006096 - HAMAP: MF_00145 - InterPro: IPR001576 - InterPro: IPR015901 - InterPro: IPR015911 - InterPro: IPR015824 - Gene3D: G3DSA:3.40.50.1270 - Gene3D: G3DSA:3.40.50.1260 - PANTHER: PTHR11406 - PIRSF: PIRSF000724 - PRINTS: PR00477
Pfam domain/function: PF00162 PGK; SSF53748 PGK
EC number: =2.7.2.3
Molecular weight: Translated: 41898; Mature: 41898
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: PS00111 PGLYCERATE_KINASE
Important sites: BINDING 36-36 BINDING 118-118 BINDING 151-151 BINDING 202-202 BINDING 293-293 BINDING 324-324
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKQSIRDIDVKGKRVFCRVDFNVPLKDGVIQDETRIQAALPTIKHLLDGGAKLVLASHL CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHEEHHHHC GRPKGEKKPEFSLAPVAKRLAELLGKDVPLVEEAYGPVAEEAVANLSEGDVVVLENVRFY CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCCCCCEEEEECEEEC PGETKNDPELAKGFAALADVYVNDAFGAAHRAHASTEGIAHHVDTAVAGLLMEKELEVLG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH KALSNPDRPFTAIIGGSKVADKIGVIDHLLDIVDTLIIGGGLSYTFSKALGHEVGTSLLE HHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH EDKLDLARQFMKKAEDKGVKFLMPVDCVITKEFGEETYVGPVDIDSIPADHMGLDIGPKT HHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCHH VELYADAIRESKLVVWNGPMGVFELDKYANGTKGVAQALADSDAYSIIGGGDSAAAAAKF HHHHHHHHHCCCEEEEECCCCCEEHHHHCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHH GLADKMSHISTGGGASLEFMEGKKLPGVEALNDK CHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC >Mature Secondary Structure MNKQSIRDIDVKGKRVFCRVDFNVPLKDGVIQDETRIQAALPTIKHLLDGGAKLVLASHL CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHEEHHHHC GRPKGEKKPEFSLAPVAKRLAELLGKDVPLVEEAYGPVAEEAVANLSEGDVVVLENVRFY CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCCCCCEEEEECEEEC PGETKNDPELAKGFAALADVYVNDAFGAAHRAHASTEGIAHHVDTAVAGLLMEKELEVLG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH KALSNPDRPFTAIIGGSKVADKIGVIDHLLDIVDTLIIGGGLSYTFSKALGHEVGTSLLE HHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH EDKLDLARQFMKKAEDKGVKFLMPVDCVITKEFGEETYVGPVDIDSIPADHMGLDIGPKT HHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCHH VELYADAIRESKLVVWNGPMGVFELDKYANGTKGVAQALADSDAYSIIGGGDSAAAAAKF HHHHHHHHHCCCEEEEECCCCCEEHHHHCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHH GLADKMSHISTGGGASLEFMEGKKLPGVEALNDK CHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA