| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is yvdB [H]
Identifier: 229916559
GI number: 229916559
Start: 787336
End: 788895
Strand: Reverse
Name: yvdB [H]
Synonym: EAT1b_0830
Alternate gene names: 229916559
Gene position: 788895-787336 (Counterclockwise)
Preceding gene: 229916560
Following gene: 229916556
Centisome position: 26.3
GC content: 58.14
Gene sequence:
>1560_bases ATGATGCAAGACTCACTCTCCACGCGTGAGATGTGGCAAAAGGATATCTCAGCCGGAATCACGGTCGGTGTCGTCGCCAT CCCGCTCGCCATGGCATTTGCCATCGCCTCAGGGGTCCCGCCGGTGTATGGGCTCTACACGTCCATTTTTGCCGGAATCC TCGTCAGCCTGTTCGGGGGTTCGACGTTTCAAATTGCCGGACCGACGGGAGCGTTCATCCCAATCGTCTCGGGTGTCGTC CTCGCATATGGATATGAAGGGTTACTCGTCACGACCGTTCTCGCCGGAATTTTGCTGCTCCTCATGAGCGTGCTTCGGGT CGGACGGCTCATCCGTTTCATGCCTCGTGCCGTCACGATTGGCTTCACGGCTGGGATCGCGGTCGTCATCTTCGTCGACC AGCTCGATGAATTGTTCGGGGTCACGTTTGAGAAGGCACCACATTTTCACGAGAACTTGCTTCGTCTCGGTCAAGCGTTG CCCGAAGCGAGCCCTTGGCCGATTGTCATTGCTGGGATTGGCTTTTTGACGCTTTGGATCATCCCAAAGCTGCCGTTCCG TTTACCGCTCTTACTCATGGCGATGCTCGTCCCGACGTTTGTCAGTCTCCTCATCCCGGGTGAGGTCGCGACGATCGGAA GTGCCTACGGCGGTATCCCGAGCGGACTGCCGGAATTCAAATGGCTTGCGATCGACATCAACCTGATCACGACGCTCCTC CCGTCCGCATTCGCCATCGCCTTCCTCGGTGCACTCGAGTCACTTCTTTCGGGAACGGTCGCCGACGGGATGGCAGGGAC GAAGATGAAGCCGGACAAGGAACTGCTCGGGCAAGGGCTTGCGAACGTGATCACACCGTTCTTTGGTGGGATCCCGTCGA CAGGTGCCATCGCCCGGACGGCAACAAACATTCAGGCGGGAGCGGTCAGCCGACGTGCCGGTGTCATCCACGGGATCACG GTCCTCATTGCGGTCTTAGTCCTCGCGCCGTTCGCGAGTTACGTGCCACTCGCTGCACTCGCTCCGATCTTGATGCGGGT CGCCTGGAACATGTCCGAACGCCATCACGTGATGGCGATGTTGCGTCATCGTTCATCCGAGTCGCTCGTCCTTCTTGTCA CATTACTATTGACGGTATTTGTCGACTTGGTCGTCGCCGTCGAGGTCGGCGTCATCTGTGCGCTCGCGCTCTTTGCGAAA CGAATGGCCGATACGATTGACGTGCGTGAACGGACAGAACGGTACGTCACACGAGACGGCCAAATCGTCTTCAGTGTCGA AGGTCCGCTCTTCTTCGGTGCGGTCGAGTTGTTCGAGCACGTCCTCCATCACATTCATCGGGAACCGAACGTGTTCATCT TCAACTTTCATCGTTGTCCCGTCATCGACGTGACCGCGGTCGAAGAGTTGCGGCGTGTCGTCACCGAGCTGAAAGCAGCC GACCGGCATGTCATCTTCGCGCACCTGTCGCCCTCGGTCCGCGCGACGCTTGCTCACTATGGGCTACTCGACGTGATTGA AACGTTCGAGACGACCCAGGAAGCGATCGAGGCATCTTAA
Upstream 100 bases:
>100_bases CTTTTGTACATTCTGTTAACGTTTTTCTCAATCCGTTTACAATCCCTCTTTCCAGGCGTACACTGAACTCGTTTTTGAAC TGATTGGAAAGAAGGAATGT
Downstream 100 bases:
>100_bases CGAACGGACAAGATGTCGCCGAATGGGACGCGGCGCACTTTGCCATCGAACAGCTCGACCTCGCGCTCGGCGTAATAGAT GGCATGGACGTAGCCGCGCA
Product: sulphate transporter
Products: Proton [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 519; Mature: 519
Protein sequence:
>519_residues MMQDSLSTREMWQKDISAGITVGVVAIPLAMAFAIASGVPPVYGLYTSIFAGILVSLFGGSTFQIAGPTGAFIPIVSGVV LAYGYEGLLVTTVLAGILLLLMSVLRVGRLIRFMPRAVTIGFTAGIAVVIFVDQLDELFGVTFEKAPHFHENLLRLGQAL PEASPWPIVIAGIGFLTLWIIPKLPFRLPLLLMAMLVPTFVSLLIPGEVATIGSAYGGIPSGLPEFKWLAIDINLITTLL PSAFAIAFLGALESLLSGTVADGMAGTKMKPDKELLGQGLANVITPFFGGIPSTGAIARTATNIQAGAVSRRAGVIHGIT VLIAVLVLAPFASYVPLAALAPILMRVAWNMSERHHVMAMLRHRSSESLVLLVTLLLTVFVDLVVAVEVGVICALALFAK RMADTIDVRERTERYVTRDGQIVFSVEGPLFFGAVELFEHVLHHIHREPNVFIFNFHRCPVIDVTAVEELRRVVTELKAA DRHVIFAHLSPSVRATLAHYGLLDVIETFETTQEAIEAS
Sequences:
>Translated_519_residues MMQDSLSTREMWQKDISAGITVGVVAIPLAMAFAIASGVPPVYGLYTSIFAGILVSLFGGSTFQIAGPTGAFIPIVSGVV LAYGYEGLLVTTVLAGILLLLMSVLRVGRLIRFMPRAVTIGFTAGIAVVIFVDQLDELFGVTFEKAPHFHENLLRLGQAL PEASPWPIVIAGIGFLTLWIIPKLPFRLPLLLMAMLVPTFVSLLIPGEVATIGSAYGGIPSGLPEFKWLAIDINLITTLL PSAFAIAFLGALESLLSGTVADGMAGTKMKPDKELLGQGLANVITPFFGGIPSTGAIARTATNIQAGAVSRRAGVIHGIT VLIAVLVLAPFASYVPLAALAPILMRVAWNMSERHHVMAMLRHRSSESLVLLVTLLLTVFVDLVVAVEVGVICALALFAK RMADTIDVRERTERYVTRDGQIVFSVEGPLFFGAVELFEHVLHHIHREPNVFIFNFHRCPVIDVTAVEELRRVVTELKAA DRHVIFAHLSPSVRATLAHYGLLDVIETFETTQEAIEAS >Mature_519_residues MMQDSLSTREMWQKDISAGITVGVVAIPLAMAFAIASGVPPVYGLYTSIFAGILVSLFGGSTFQIAGPTGAFIPIVSGVV LAYGYEGLLVTTVLAGILLLLMSVLRVGRLIRFMPRAVTIGFTAGIAVVIFVDQLDELFGVTFEKAPHFHENLLRLGQAL PEASPWPIVIAGIGFLTLWIIPKLPFRLPLLLMAMLVPTFVSLLIPGEVATIGSAYGGIPSGLPEFKWLAIDINLITTLL PSAFAIAFLGALESLLSGTVADGMAGTKMKPDKELLGQGLANVITPFFGGIPSTGAIARTATNIQAGAVSRRAGVIHGIT VLIAVLVLAPFASYVPLAALAPILMRVAWNMSERHHVMAMLRHRSSESLVLLVTLLLTVFVDLVVAVEVGVICALALFAK RMADTIDVRERTERYVTRDGQIVFSVEGPLFFGAVELFEHVLHHIHREPNVFIFNFHRCPVIDVTAVEELRRVVTELKAA DRHVIFAHLSPSVRATLAHYGLLDVIETFETTQEAIEAS
Specific function: Possible Sulfate Transporter. [C]
COG id: COG0659
COG function: function code P; Sulfate permease and related transporters (MFS superfamily)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 STAS domain [H]
Homologues:
Organism=Homo sapiens, GI16306483, Length=615, Percent_Identity=22.4390243902439, Blast_Score=98, Evalue=2e-20, Organism=Homo sapiens, GI20336282, Length=615, Percent_Identity=22.4390243902439, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI4557535, Length=498, Percent_Identity=25.3012048192771, Blast_Score=93, Evalue=5e-19, Organism=Homo sapiens, GI94721259, Length=468, Percent_Identity=23.2905982905983, Blast_Score=91, Evalue=4e-18, Organism=Homo sapiens, GI94721255, Length=468, Percent_Identity=23.2905982905983, Blast_Score=90, Evalue=4e-18, Organism=Homo sapiens, GI94721253, Length=468, Percent_Identity=23.2905982905983, Blast_Score=90, Evalue=4e-18, Organism=Homo sapiens, GI94721257, Length=468, Percent_Identity=23.2905982905983, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI45827800, Length=484, Percent_Identity=21.900826446281, Blast_Score=87, Evalue=4e-17, Organism=Homo sapiens, GI39752683, Length=484, Percent_Identity=21.900826446281, Blast_Score=87, Evalue=4e-17, Organism=Homo sapiens, GI45827802, Length=422, Percent_Identity=23.2227488151659, Blast_Score=83, Evalue=8e-16, Organism=Homo sapiens, GI4505697, Length=379, Percent_Identity=22.9551451187335, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI269784651, Length=352, Percent_Identity=23.2954545454545, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI16418457, Length=428, Percent_Identity=22.6635514018692, Blast_Score=77, Evalue=5e-14, Organism=Homo sapiens, GI301601599, Length=428, Percent_Identity=22.6635514018692, Blast_Score=77, Evalue=5e-14, Organism=Homo sapiens, GI262206105, Length=155, Percent_Identity=37.4193548387097, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI262206075, Length=155, Percent_Identity=37.4193548387097, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI262206069, Length=155, Percent_Identity=37.4193548387097, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI262206063, Length=155, Percent_Identity=37.4193548387097, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI65506789, Length=564, Percent_Identity=24.645390070922, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI47131207, Length=516, Percent_Identity=23.4496124031008, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI20336272, Length=516, Percent_Identity=23.4496124031008, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI100913030, Length=504, Percent_Identity=22.2222222222222, Blast_Score=71, Evalue=3e-12, Organism=Escherichia coli, GI87081859, Length=494, Percent_Identity=43.3198380566802, Blast_Score=305, Evalue=6e-84, Organism=Caenorhabditis elegans, GI86564196, Length=604, Percent_Identity=24.5033112582781, Blast_Score=107, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17566848, Length=547, Percent_Identity=24.1316270566728, Blast_Score=104, Evalue=1e-22, Organism=Caenorhabditis elegans, GI86565215, Length=573, Percent_Identity=21.8150087260035, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562578, Length=498, Percent_Identity=24.2971887550201, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI193203292, Length=506, Percent_Identity=21.3438735177866, Blast_Score=69, Evalue=6e-12, Organism=Caenorhabditis elegans, GI86565213, Length=162, Percent_Identity=28.3950617283951, Blast_Score=66, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6325260, Length=563, Percent_Identity=23.9786856127886, Blast_Score=88, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6323121, Length=215, Percent_Identity=24.6511627906977, Blast_Score=67, Evalue=6e-12, Organism=Drosophila melanogaster, GI85815873, Length=500, Percent_Identity=25, Blast_Score=115, Evalue=1e-25, Organism=Drosophila melanogaster, GI24649801, Length=551, Percent_Identity=23.956442831216, Blast_Score=106, Evalue=3e-23, Organism=Drosophila melanogaster, GI24663084, Length=464, Percent_Identity=22.6293103448276, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI21357695, Length=464, Percent_Identity=22.6293103448276, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI19922482, Length=419, Percent_Identity=25.7756563245823, Blast_Score=97, Evalue=4e-20, Organism=Drosophila melanogaster, GI21358229, Length=528, Percent_Identity=25, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI24647160, Length=140, Percent_Identity=33.5714285714286, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355087, Length=140, Percent_Identity=32.8571428571429, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24666186, Length=262, Percent_Identity=24.8091603053435, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI24651449, Length=134, Percent_Identity=29.8507462686567, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002645 - InterPro: IPR001902 - InterPro: IPR011547 [H]
Pfam domain/function: PF01740 STAS; PF00916 Sulfate_transp [H]
EC number: NA
Molecular weight: Translated: 55857; Mature: 55857
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: PS50801 STAS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMQDSLSTREMWQKDISAGITVGVVAIPLAMAFAIASGVPPVYGLYTSIFAGILVSLFGG CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC STFQIAGPTGAFIPIVSGVVLAYGYEGLLVTTVLAGILLLLMSVLRVGRLIRFMPRAVTI CEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE GFTAGIAVVIFVDQLDELFGVTFEKAPHFHENLLRLGQALPEASPWPIVIAGIGFLTLWI HHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHH IPKLPFRLPLLLMAMLVPTFVSLLIPGEVATIGSAYGGIPSGLPEFKWLAIDINLITTLL HHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHH PSAFAIAFLGALESLLSGTVADGMAGTKMKPDKELLGQGLANVITPFFGGIPSTGAIART HHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH ATNIQAGAVSRRAGVIHGITVLIAVLVLAPFASYVPLAALAPILMRVAWNMSERHHVMAM HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LRHRSSESLVLLVTLLLTVFVDLVVAVEVGVICALALFAKRMADTIDVRERTERYVTRDG HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC QIVFSVEGPLFFGAVELFEHVLHHIHREPNVFIFNFHRCPVIDVTAVEELRRVVTELKAA CEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHC DRHVIFAHLSPSVRATLAHYGLLDVIETFETTQEAIEAS CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MMQDSLSTREMWQKDISAGITVGVVAIPLAMAFAIASGVPPVYGLYTSIFAGILVSLFGG CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC STFQIAGPTGAFIPIVSGVVLAYGYEGLLVTTVLAGILLLLMSVLRVGRLIRFMPRAVTI CEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE GFTAGIAVVIFVDQLDELFGVTFEKAPHFHENLLRLGQALPEASPWPIVIAGIGFLTLWI HHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHH IPKLPFRLPLLLMAMLVPTFVSLLIPGEVATIGSAYGGIPSGLPEFKWLAIDINLITTLL HHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHH PSAFAIAFLGALESLLSGTVADGMAGTKMKPDKELLGQGLANVITPFFGGIPSTGAIART HHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH ATNIQAGAVSRRAGVIHGITVLIAVLVLAPFASYVPLAALAPILMRVAWNMSERHHVMAM HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LRHRSSESLVLLVTLLLTVFVDLVVAVEVGVICALALFAKRMADTIDVRERTERYVTRDG HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC QIVFSVEGPLFFGAVELFEHVLHHIHREPNVFIFNFHRCPVIDVTAVEELRRVVTELKAA CEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHC DRHVIFAHLSPSVRATLAHYGLLDVIETFETTQEAIEAS CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; SO42- [Periplasm] [C]
Specific reaction: Proton [Periplasm] + SO42- [Periplasm] = Proton [Cytoplasm] + SO42- [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]