BacMap

Definition	Exiguobacterium sp. AT1b, complete genome.
Accession	NC_012673
Length	2,999,895

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The map label for this gene is yybJ [H]

Identifier: 229916560

GI number: 229916560

Start: 789121

End: 789762

Strand: Reverse

Name: yybJ [H]

Synonym: EAT1b_0831

Alternate gene names: 229916560

Gene position: 789762-789121 (Counterclockwise)

Preceding gene: 229916561

Following gene: 229916559

Centisome position: 26.33

GC content: 39.1

Gene sequence:

>642_bases
ATGACTGCAGTGATCGAATTAAAAAATGTAACGAAATCCTACAAAGGCAATTTGTTATTTGATGCGGTGGATTTGACTGT
TCCGCAAGGGCGGATTGTCGGAATTGTTGGACCGAACGGATCTGGCAAATCCGTCTTGTTCAAAATGATGTGTGGATTTG
TGTTCCCTGATCATGGAGAAGTGTACGTTGAGGAGAAACAAATTGGAAAAGAGCAGCGCTTCCCGGAAGGTGTCGGTATA
ATTATCGATCGTCCAGGTTATATTGCCAATAAGACAGGATTTGAAAACTTAAAAGAACTGGCACAAATTCAAAATCAGAT
TGATGAAGAGGCAATTCGAAAGACAATGTTGATTTTAGGATTAAACCCAGACAATTCACAAAAAGTGAAAAACTATTCGC
TTGGAATGAAGCAAAAACTTGCTATCGCACAGGCGATTATGGAAAACCAACACATCTTGATTTTGGATGAAGCGTTCAAT
GCATTAGATCATGATAGTGTCGAATCGTTACGTGAACTATTACTTGCTTTCCGAGAAGAAGGGAAGACTATTGTAATGAC
GAGTCACAATCAAGAAGATATCGATTACTTATGTGAGGATGTCTATCGAATCAACCGTGGCAAGCTTGAGAAAATTGTAT
GA

Upstream 100 bases:

>100_bases
TGTGGACCGTGTTTATACAATTGATTGGGGCACTGATTGTACTGATGCTCGGGATCACGTTGTTGCTAAAAAGAAGTTTA
CATGTATGAGGAGGATGAAT

Downstream 100 bases:

>100_bases
ATTGTACCGTGTGGACGTATCTAAGAGGTGCGTCTTTCTGTATGTTTCAATCAAATTGATGATAGATGAGAAGAATTATT
CACGTCTTATTCAACAAAAG

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MTAVIELKNVTKSYKGNLLFDAVDLTVPQGRIVGIVGPNGSGKSVLFKMMCGFVFPDHGEVYVEEKQIGKEQRFPEGVGI
IIDRPGYIANKTGFENLKELAQIQNQIDEEAIRKTMLILGLNPDNSQKVKNYSLGMKQKLAIAQAIMENQHILILDEAFN
ALDHDSVESLRELLLAFREEGKTIVMTSHNQEDIDYLCEDVYRINRGKLEKIV

Sequences:

>Translated_213_residues
MTAVIELKNVTKSYKGNLLFDAVDLTVPQGRIVGIVGPNGSGKSVLFKMMCGFVFPDHGEVYVEEKQIGKEQRFPEGVGI
IIDRPGYIANKTGFENLKELAQIQNQIDEEAIRKTMLILGLNPDNSQKVKNYSLGMKQKLAIAQAIMENQHILILDEAFN
ALDHDSVESLRELLLAFREEGKTIVMTSHNQEDIDYLCEDVYRINRGKLEKIV
>Mature_212_residues
TAVIELKNVTKSYKGNLLFDAVDLTVPQGRIVGIVGPNGSGKSVLFKMMCGFVFPDHGEVYVEEKQIGKEQRFPEGVGII
IDRPGYIANKTGFENLKELAQIQNQIDEEAIRKTMLILGLNPDNSQKVKNYSLGMKQKLAIAQAIMENQHILILDEAFNA
LDHDSVESLRELLLAFREEGKTIVMTSHNQEDIDYLCEDVYRINRGKLEKIV

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI150417984, Length=213, Percent_Identity=28.6384976525822, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI21536376, Length=205, Percent_Identity=28.780487804878, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI116734710, Length=218, Percent_Identity=27.0642201834862, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI105990541, Length=211, Percent_Identity=27.0142180094787, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI27881501, Length=217, Percent_Identity=24.8847926267281, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI30795238, Length=217, Percent_Identity=25.3456221198157, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI31657092, Length=212, Percent_Identity=26.4150943396226, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI45446740, Length=220, Percent_Identity=26.3636363636364, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI47078218, Length=220, Percent_Identity=26.3636363636364, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI10947137, Length=222, Percent_Identity=24.7747747747748, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI27881506, Length=222, Percent_Identity=24.7747747747748, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI171184400, Length=213, Percent_Identity=27.2300469483568, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI255708477, Length=209, Percent_Identity=28.7081339712919, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI27262624, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI27262626, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI27477115, Length=209, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI10947135, Length=233, Percent_Identity=24.8927038626609, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI69354671, Length=233, Percent_Identity=24.8927038626609, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI42741659, Length=198, Percent_Identity=29.7979797979798, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI27436953, Length=224, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI153792144, Length=216, Percent_Identity=23.6111111111111, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87081782, Length=217, Percent_Identity=30.8755760368664, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1786398, Length=222, Percent_Identity=30.6306306306306, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1789593, Length=214, Percent_Identity=28.5046728971963, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI87081791, Length=221, Percent_Identity=25.3393665158371, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1790525, Length=212, Percent_Identity=31.6037735849057, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786563, Length=211, Percent_Identity=25.1184834123223, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788761, Length=215, Percent_Identity=26.5116279069767, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790190, Length=223, Percent_Identity=28.2511210762332, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87081709, Length=213, Percent_Identity=23.0046948356808, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI48995001, Length=195, Percent_Identity=26.1538461538462, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790467, Length=214, Percent_Identity=23.8317757009346, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI2367384, Length=203, Percent_Identity=30.0492610837438, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787370, Length=218, Percent_Identity=24.3119266055046, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786319, Length=224, Percent_Identity=29.0178571428571, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786654, Length=217, Percent_Identity=26.2672811059908, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1788225, Length=223, Percent_Identity=24.6636771300448, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1789751, Length=214, Percent_Identity=26.1682242990654, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1787164, Length=204, Percent_Identity=25.9803921568627, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787758, Length=203, Percent_Identity=27.0935960591133, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788472, Length=216, Percent_Identity=26.3888888888889, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1786345, Length=217, Percent_Identity=25.3456221198157, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787041, Length=210, Percent_Identity=29.0476190476191, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786803, Length=201, Percent_Identity=27.363184079602, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789991, Length=223, Percent_Identity=27.3542600896861, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787182, Length=235, Percent_Identity=27.6595744680851, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI87082267, Length=215, Percent_Identity=24.6511627906977, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1790544, Length=233, Percent_Identity=22.3175965665236, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1788210, Length=226, Percent_Identity=24.7787610619469, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788450, Length=217, Percent_Identity=25.8064516129032, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787029, Length=214, Percent_Identity=24.7663551401869, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787712, Length=220, Percent_Identity=22.7272727272727, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788897, Length=206, Percent_Identity=27.1844660194175, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787547, Length=231, Percent_Identity=23.8095238095238, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787105, Length=222, Percent_Identity=25.6756756756757, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1786253, Length=195, Percent_Identity=29.2307692307692, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI48994943, Length=204, Percent_Identity=25.4901960784314, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788540, Length=192, Percent_Identity=29.6875, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789586, Length=209, Percent_Identity=23.444976076555, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1789873, Length=214, Percent_Identity=25.2336448598131, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI87082268, Length=211, Percent_Identity=26.0663507109005, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1788053, Length=194, Percent_Identity=25.7731958762887, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1788165, Length=196, Percent_Identity=25.5102040816327, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786698, Length=200, Percent_Identity=23, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787792, Length=205, Percent_Identity=23.4146341463415, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI87082064, Length=172, Percent_Identity=26.7441860465116, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1786703, Length=203, Percent_Identity=24.1379310344828, Blast_Score=60, Evalue=7e-11,
Organism=Escherichia coli, GI1787143, Length=228, Percent_Identity=25.4385964912281, Blast_Score=60, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=213, Percent_Identity=26.7605633802817, Blast_Score=85, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71983510, Length=212, Percent_Identity=27.3584905660377, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71983516, Length=212, Percent_Identity=27.3584905660377, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71983523, Length=212, Percent_Identity=27.3584905660377, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI212646699, Length=199, Percent_Identity=30.6532663316583, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17559834, Length=226, Percent_Identity=26.9911504424779, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI115533592, Length=231, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17511077, Length=231, Percent_Identity=28.1385281385281, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI71992290, Length=223, Percent_Identity=26.9058295964126, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=195, Percent_Identity=25.1282051282051, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=213, Percent_Identity=25.3521126760563, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=223, Percent_Identity=30.0448430493274, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17543740, Length=181, Percent_Identity=27.6243093922652, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17565938, Length=183, Percent_Identity=26.2295081967213, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=211, Percent_Identity=27.0142180094787, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=201, Percent_Identity=26.865671641791, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71984940, Length=223, Percent_Identity=26.0089686098655, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6325030, Length=204, Percent_Identity=29.4117647058824, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI221512771, Length=193, Percent_Identity=26.9430051813472, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI28574150, Length=209, Percent_Identity=28.2296650717703, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007328, Length=209, Percent_Identity=28.2296650717703, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28573571, Length=208, Percent_Identity=27.4038461538462, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28573573, Length=208, Percent_Identity=27.4038461538462, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24643674, Length=211, Percent_Identity=27.4881516587678, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24650855, Length=205, Percent_Identity=25.8536585365854, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24650853, Length=205, Percent_Identity=25.8536585365854, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281362751, Length=205, Percent_Identity=25.8536585365854, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24659289, Length=221, Percent_Identity=27.1493212669683, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21357907, Length=202, Percent_Identity=29.2079207920792, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85726357, Length=179, Percent_Identity=29.0502793296089, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24666092, Length=219, Percent_Identity=24.2009132420091, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221474134, Length=213, Percent_Identity=31.4553990610329, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24666836, Length=229, Percent_Identity=25.764192139738, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28571209, Length=216, Percent_Identity=22.6851851851852, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24641342, Length=191, Percent_Identity=29.8429319371728, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 23968; Mature: 23837

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAVIELKNVTKSYKGNLLFDAVDLTVPQGRIVGIVGPNGSGKSVLFKMMCGFVFPDHGE
CCEEEEHHHHHHHHCCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCC
VYVEEKQIGKEQRFPEGVGIIIDRPGYIANKTGFENLKELAQIQNQIDEEAIRKTMLILG
EEEEHHHCCHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEE
LNPDNSQKVKNYSLGMKQKLAIAQAIMENQHILILDEAFNALDHDSVESLRELLLAFREE
CCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHC
GKTIVMTSHNQEDIDYLCEDVYRINRGKLEKIV
CCEEEEECCCCHHHHHHHHHHHHCCCCHHHHCC
>Mature Secondary Structure 
TAVIELKNVTKSYKGNLLFDAVDLTVPQGRIVGIVGPNGSGKSVLFKMMCGFVFPDHGE
CEEEEHHHHHHHHCCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCC
VYVEEKQIGKEQRFPEGVGIIIDRPGYIANKTGFENLKELAQIQNQIDEEAIRKTMLILG
EEEEHHHCCHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEE
LNPDNSQKVKNYSLGMKQKLAIAQAIMENQHILILDEAFNALDHDSVESLRELLLAFREE
CCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHC
GKTIVMTSHNQEDIDYLCEDVYRINRGKLEKIV
CCEEEEECCCCHHHHHHHHHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938973; 7584024; 9384377 [H]