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The map label for this gene is 229916465

Identifier: 229916465

GI number: 229916465

Start: 689306

End: 690094

Strand: Reverse

Name: 229916465

Synonym: EAT1b_0735

Alternate gene names: NA

Gene position: 690094-689306 (Counterclockwise)

Preceding gene: 229916466

Following gene: 229916464

Centisome position: 23.0

GC content: 46.13

Gene sequence:

>789_bases
ATGTTTGTTGTCGGTCAGTTCTCATTAAAGGGGATGGGCATGATGAACGAGGAAGTCAATTTACTCGTGTTGGCAACGCA
GTATATGTTTTGGGTTGGTTTTGTAGGAATGGCAGCTGCGACTTTGTATTTTCTCGTTGAGCGGAGCAGTCTTGATCCCG
AGTACCGTTCCGTCGCGACGGTGGCCGCACTCGTTACGTTTGTAGCAGCGATTCATTATTACTTTATGAAAGATGCGGTC
GGCGATTCTGGATTACTATCGGAAATCACCGGATTCCCGACGGAGATTCGGTATATCGATTGGCTTGTCACGACACCTTT
ACTCTTGATCAAGTTTCCGCTACTGCTCAGCCTGCAAGGGAAGATGAAAACCGGTTTATTAACGAAGTTGATTATTGCGG
ATATCATCATGATTGTTGCCGGTTATCTCGGCGAGTCGTCTATTAACTTGAACGGCGGATTCACGCAACTCGGACTTTGG
GGATATCTTGTCGGTTGTATCGCGTGGATTTATATCATTTACTTGCTCTTCACGAACGTCACGAAAGCGGCGGAGACGTC
ACCTCCACCTATTCGGAAGGCGTTACTCAACATGCGTCTCTTCATTTTGATCGGATGGGCGATTTACCCAATCGGCTATG
CGGTGACATTGTTCGCAACAGGGATTGAAGTTCAGCTCGTGCGCGAATTGATTTACAACGTTGCGGATTTAATCAATAAA
GTTGGATTCGGATTGATTGCGTTCTTTGCTGTCAAAACCATCTCAACGCAAAAACAAGTCAAAGCTTGA

Upstream 100 bases:

>100_bases
TTCAAAGTTCATGACTTTGCGCATATTCTCTACAGATTTAAAGCTTCGACCTATTGACTTTCGAGGATAAAATTTAGGTG
AAGGATCCTTTCAACCACAT

Downstream 100 bases:

>100_bases
AAACTTCAAGTTGACGTTGAATTTCAGAATGGGCTAAAATAGACTACGATGAATAGCAAGCGTTGAAGAGGACTAGTAGC
GAACGTTCCGTTTCAAAGAG

Product: rhodopsin

Products: NA

Alternate protein names: GPR [H]

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MFVVGQFSLKGMGMMNEEVNLLVLATQYMFWVGFVGMAAATLYFLVERSSLDPEYRSVATVAALVTFVAAIHYYFMKDAV
GDSGLLSEITGFPTEIRYIDWLVTTPLLLIKFPLLLSLQGKMKTGLLTKLIIADIIMIVAGYLGESSINLNGGFTQLGLW
GYLVGCIAWIYIIYLLFTNVTKAAETSPPPIRKALLNMRLFILIGWAIYPIGYAVTLFATGIEVQLVRELIYNVADLINK
VGFGLIAFFAVKTISTQKQVKA

Sequences:

>Translated_262_residues
MFVVGQFSLKGMGMMNEEVNLLVLATQYMFWVGFVGMAAATLYFLVERSSLDPEYRSVATVAALVTFVAAIHYYFMKDAV
GDSGLLSEITGFPTEIRYIDWLVTTPLLLIKFPLLLSLQGKMKTGLLTKLIIADIIMIVAGYLGESSINLNGGFTQLGLW
GYLVGCIAWIYIIYLLFTNVTKAAETSPPPIRKALLNMRLFILIGWAIYPIGYAVTLFATGIEVQLVRELIYNVADLINK
VGFGLIAFFAVKTISTQKQVKA
>Mature_262_residues
MFVVGQFSLKGMGMMNEEVNLLVLATQYMFWVGFVGMAAATLYFLVERSSLDPEYRSVATVAALVTFVAAIHYYFMKDAV
GDSGLLSEITGFPTEIRYIDWLVTTPLLLIKFPLLLSLQGKMKTGLLTKLIIADIIMIVAGYLGESSINLNGGFTQLGLW
GYLVGCIAWIYIIYLLFTNVTKAAETSPPPIRKALLNMRLFILIGWAIYPIGYAVTLFATGIEVQLVRELIYNVADLINK
VGFGLIAFFAVKTISTQKQVKA

Specific function: Light-driven proton pump that generates photothrophic energy [H]

COG id: COG5524

COG function: function code R; Bacteriorhodopsin

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal/bacterial/fungal opsin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001425
- InterPro:   IPR017402
- InterPro:   IPR018229 [H]

Pfam domain/function: PF01036 Bac_rhodopsin [H]

EC number: NA

Molecular weight: Translated: 28985; Mature: 28985

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS00950 BACTERIAL_OPSIN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVVGQFSLKGMGMMNEEVNLLVLATQYMFWVGFVGMAAATLYFLVERSSLDPEYRSVAT
CEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VAALVTFVAAIHYYFMKDAVGDSGLLSEITGFPTEIRYIDWLVTTPLLLIKFPLLLSLQG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
KMKTGLLTKLIIADIIMIVAGYLGESSINLNGGFTQLGLWGYLVGCIAWIYIIYLLFTNV
HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKAAETSPPPIRKALLNMRLFILIGWAIYPIGYAVTLFATGIEVQLVRELIYNVADLINK
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
VGFGLIAFFAVKTISTQKQVKA
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFVVGQFSLKGMGMMNEEVNLLVLATQYMFWVGFVGMAAATLYFLVERSSLDPEYRSVAT
CEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VAALVTFVAAIHYYFMKDAVGDSGLLSEITGFPTEIRYIDWLVTTPLLLIKFPLLLSLQG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
KMKTGLLTKLIIADIIMIVAGYLGESSINLNGGFTQLGLWGYLVGCIAWIYIIYLLFTNV
HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKAAETSPPPIRKALLNMRLFILIGWAIYPIGYAVTLFATGIEVQLVRELIYNVADLINK
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
VGFGLIAFFAVKTISTQKQVKA
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10988064; 11969395; 12547799; 12206764; 12719254; 12767242; 11459054; 12682005 [H]