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The map label for this gene is hspC1 [H]

Identifier: 229586523

GI number: 229586523

Start: 365624

End: 366127

Strand: Direct

Name: hspC1 [H]

Synonym: RAF_ORF0337

Alternate gene names: 229586523

Gene position: 365624-366127 (Clockwise)

Preceding gene: 229586522

Following gene: 229586525

Centisome position: 28.6

GC content: 26.39

Gene sequence:

>504_bases
ATGTTAAAGAGCGTAAGATTATATATTCCGTCTATAGCAGCTATGATTTTATCTAGTAATATTGCAATAGCTAATAAGAA
TTATGATGCCGGTAATGCAACGCCACTGCGTCAGGTAGCAGATTTAATAGATAATCAAATTACAAATATTGATAATTTAT
TTAAAAATAGATTGCCGCTTTATGAATCTAATAGCATAAAAAGCAATTTTATTACTAAAGATAAGCAGTATATTATTGTT
ATGGAAGTACCTGGCTTTGATAAAAGTCAAATTAAGGTTAAAGTAAACGGTAATAAATTATTTATTACAGGGAATATAGA
AGAAAAAAATAAAGCTGATTATTCAGATAATTATATGAATAAAAATTTTAATTATGTAATATCATTATATGAAGATGTAG
ATCAGGCAAATATCTCTTCAAGCCTTAAGAATGGAATACTTACTATTATTCTACCTCGTATTGAGATTAAAGAACAAGAA
GCAAGAGAGATAGTCATTAATTAA

Upstream 100 bases:

>100_bases
GCAGCGTACTTTCAGCAAATTATGGAAATATAAGACTTGAATTTTAAATAGATAATTTTATATATTTAAGTATATAACTA
ACAAAATTAATGGTGGTTTT

Downstream 100 bases:

>100_bases
TCAAGCATTGCTAATTTTGCTGAAACAAAACCTTTCTCTATATATAGTTAGGTAGTTTTATTAGCTCATGCTTTAGTTCA
TTATCTACTCCTATGGTTTC

Product: Small heat shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MLKSVRLYIPSIAAMILSSNIAIANKNYDAGNATPLRQVADLIDNQITNIDNLFKNRLPLYESNSIKSNFITKDKQYIIV
MEVPGFDKSQIKVKVNGNKLFITGNIEEKNKADYSDNYMNKNFNYVISLYEDVDQANISSSLKNGILTIILPRIEIKEQE
AREIVIN

Sequences:

>Translated_167_residues
MLKSVRLYIPSIAAMILSSNIAIANKNYDAGNATPLRQVADLIDNQITNIDNLFKNRLPLYESNSIKSNFITKDKQYIIV
MEVPGFDKSQIKVKVNGNKLFITGNIEEKNKADYSDNYMNKNFNYVISLYEDVDQANISSSLKNGILTIILPRIEIKEQE
AREIVIN
>Mature_167_residues
MLKSVRLYIPSIAAMILSSNIAIANKNYDAGNATPLRQVADLIDNQITNIDNLFKNRLPLYESNSIKSNFITKDKQYIIV
MEVPGFDKSQIKVKVNGNKLFITGNIEEKNKADYSDNYMNKNFNYVISLYEDVDQANISSSLKNGILTIILPRIEIKEQE
AREIVIN

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 18964; Mature: 18964

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKSVRLYIPSIAAMILSSNIAIANKNYDAGNATPLRQVADLIDNQITNIDNLFKNRLPL
CCCCEEEHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCC
YESNSIKSNFITKDKQYIIVMEVPGFDKSQIKVKVNGNKLFITGNIEEKNKADYSDNYMN
EECCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCC
KNFNYVISLYEDVDQANISSSLKNGILTIILPRIEIKEQEAREIVIN
CCCEEEEEEEHHCCHHHHHHHHHCCEEEEEECCCEECCCCCCEEECC
>Mature Secondary Structure
MLKSVRLYIPSIAAMILSSNIAIANKNYDAGNATPLRQVADLIDNQITNIDNLFKNRLPL
CCCCEEEHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCC
YESNSIKSNFITKDKQYIIVMEVPGFDKSQIKVKVNGNKLFITGNIEEKNKADYSDNYMN
EECCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCC
KNFNYVISLYEDVDQANISSSLKNGILTIILPRIEIKEQEAREIVIN
CCCEEEEEEEHHCCHHHHHHHHHCCEEEEEECCCEECCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]