| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is dinG [H]
Identifier: 227081984
GI number: 227081984
Start: 1930627
End: 1932738
Strand: Direct
Name: dinG [H]
Synonym: VCM66_1778
Alternate gene names: 227081984
Gene position: 1930627-1932738 (Clockwise)
Preceding gene: 227081981
Following gene: 227081985
Centisome position: 66.75
GC content: 46.69
Gene sequence:
>2112_bases GTGCTACCATCGCGCCATCGCACTTTGGACACCTCTATGCTGACAAAAAACATTCAAGATTCCATTCGCAACAGTTATCA AAATCTACAAAATCAATTGGAAAATTTCATTCCTCGTCGCGCTCAAAATTTCCTAGTTGCCGAGATGGCCAAAACCCTTT GTGGGGCTTATCACAAATCGACTCAAATGTTAGTGGCCGAAGCAGGAACAGGCATAGGAAAGTCTCTCTCCTATTTAATG GCGGTTATCCCTGTGGCGGTGGTGAATAAGCGGAAAGTCGTGATCTCCACAGCCACAGTGGCTCTTCAAGAGCAACTGCT CAATAAAGACTTACCGCTTTATCGCAGGATCAGTGATCAAAACTTCTCATTTATTCTTGCGAAAGGCCGTCAACGTTATT GTTGTAGCGAACGTTTAGCCGCAGCCTGTGGGATTGATGATGGGCAAATCGCGCTATTTGAAAGTAAACCCAAACCTCAT GAGACAGAGCTGCTTGCAGAGCTGCATACTGCCCTAAGCCAAGGGAAATGGGATGGTGACCGTGATGGCTGGCCAAGTCC GATTAGTGATGAATTGTGGTCAGTCATTGTCAGCGATAAACATAGTTGTAATGGCAGCTTTAGTGTTCATCGCCACTGTC CGTTTCAGAAGGCACGTTCAGAACTGGATAAGGCCGATGTGATTATTGCTAACCATAGTCTAGTGATGGCCGACGCGGAC TTAGGTGGGGGCGTTATCCTCCCCGCACCCGAAGAAACGATTTATGTTTTTGACGAAGCGCACCATCTCCCTACGGTCGC GCGCGAGCATGCATCGGCAGCCGCGACGTTAAAAGGAGCCGCAAGCTGGCTAGAAAAGCTCAATCAATCCTTATCCAAGT TCACCGCTCTAGGTGATGAAAAACGTGCCGAGCGATTCGCTGAAGAGGCGCGCACGGCGATACAGTACTTAATCCCGACT TTGAATCAGTTACCCAAACAGTTTATGGCTGAACAATTTGTTGAGGGAATTTACCGTTTTGAGCACGGCGAGTTACCACA ATGGCTGGCTGATGAGTCACAAGCACTTAGTAAGTCATCACAAAAAGCGATGCAATCTGTGAGTAAAGTAGCTGATTTAA TTGCTGAAAAAGTAAAAGAAGGCGAACTTGCAACACGCATCGCTGAACCTGCGTTGGGCGAATTGGGGTTTTACGTACAA CGTCTAGAAAACTTGACCCAAGTATGGCAACTGATGGCAAAACCTAACAAAGATAAAGGGGCCCCTTTAGCACGCTGGCT TGAAGTCAGTCCTGAACGAGAAGGTGACTATTTAGTCAGTGTTTCGCCACTCGAAATCGGCTGGCAACTGGATCAGCAGC TTTGGAGCCGCTGTGTGGGCGCGATATTAGTTTCTGCAACCTTAAGAGCATTAAATTCATTCGGCTTCTTCTGTCGGCAA GCTGGGATCAGTGACAAAGCGGAAGATGGAGTGCAATTTTTAGCTTTAGCCTCGCCATTTGATTACCCTACGCAAGGTGA ATTGCTGATCCCAAAAATGGAAATGGAGCCACAAGCCGAGGGCTATACTGCCTATTTAGCCAAAAAAGTATTGTGTTATC TGCAAGCTGACAAAGCCAATTTGGTCCTCTTTGCTTCTTATTGGCAAATGCGTGAAGTGGCAGAGTCTTTAAAAGTCGAG TTCACAAAACGTGGTTGGGCACTGCAGGTGCAAGGTGAGAAATCTCGATCAGAAATTCTAAATAAACATAAAAAGCTGAT TGAAAAACAGAAAACCAGTGTTTTATTTGGCACTGGAAGTTTTTCGGAAGGTCTAGATTTGCCCGGTGAACTCCTCGAAA ATCTGATCATCACCAAAATCCCCTTTGCCGTTCCAACCTCTCCGGTAGAACAAGCACATGCCGAATATATTCAAGAGCTG GGCGGTAACCCTTTCATGCAAATTACCGTTCCTGAAGCCAGCAAAAAGCTCATCCAGTCTGTTGGGCGTCTACTGCGCAA AGAGCGAGATTCTGGTAGAGTGGTCATCCTTGATCGGCGGGTAGTATCAAAGCGTTACGGAAAAGCGTTGTTGGATGCCT TACCGCCCTTTAAGCGCACGATTGAATACTGA
Upstream 100 bases:
>100_bases TAAATTTAAGTCTCTGAAGGTTCAGTTTTTATTTGTGAACAAGATCTAGATTTCTATTAAAAGCATACGATTTCGTGAAG TAGGTATCACTCAGTGATCT
Downstream 100 bases:
>100_bases TAATAACGATTAACTCACCACAATTAGGATTGCGCTTTTGATGGAATGGATAGAACCCACCACGATAATGGTGCTGGCTC TTGTTGCTTTTATTGCCGGA
Product: ATP-dependent DNA helicase DinG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 703; Mature: 703
Protein sequence:
>703_residues MLPSRHRTLDTSMLTKNIQDSIRNSYQNLQNQLENFIPRRAQNFLVAEMAKTLCGAYHKSTQMLVAEAGTGIGKSLSYLM AVIPVAVVNKRKVVISTATVALQEQLLNKDLPLYRRISDQNFSFILAKGRQRYCCSERLAAACGIDDGQIALFESKPKPH ETELLAELHTALSQGKWDGDRDGWPSPISDELWSVIVSDKHSCNGSFSVHRHCPFQKARSELDKADVIIANHSLVMADAD LGGGVILPAPEETIYVFDEAHHLPTVAREHASAAATLKGAASWLEKLNQSLSKFTALGDEKRAERFAEEARTAIQYLIPT LNQLPKQFMAEQFVEGIYRFEHGELPQWLADESQALSKSSQKAMQSVSKVADLIAEKVKEGELATRIAEPALGELGFYVQ RLENLTQVWQLMAKPNKDKGAPLARWLEVSPEREGDYLVSVSPLEIGWQLDQQLWSRCVGAILVSATLRALNSFGFFCRQ AGISDKAEDGVQFLALASPFDYPTQGELLIPKMEMEPQAEGYTAYLAKKVLCYLQADKANLVLFASYWQMREVAESLKVE FTKRGWALQVQGEKSRSEILNKHKKLIEKQKTSVLFGTGSFSEGLDLPGELLENLIITKIPFAVPTSPVEQAHAEYIQEL GGNPFMQITVPEASKKLIQSVGRLLRKERDSGRVVILDRRVVSKRYGKALLDALPPFKRTIEY
Sequences:
>Translated_703_residues MLPSRHRTLDTSMLTKNIQDSIRNSYQNLQNQLENFIPRRAQNFLVAEMAKTLCGAYHKSTQMLVAEAGTGIGKSLSYLM AVIPVAVVNKRKVVISTATVALQEQLLNKDLPLYRRISDQNFSFILAKGRQRYCCSERLAAACGIDDGQIALFESKPKPH ETELLAELHTALSQGKWDGDRDGWPSPISDELWSVIVSDKHSCNGSFSVHRHCPFQKARSELDKADVIIANHSLVMADAD LGGGVILPAPEETIYVFDEAHHLPTVAREHASAAATLKGAASWLEKLNQSLSKFTALGDEKRAERFAEEARTAIQYLIPT LNQLPKQFMAEQFVEGIYRFEHGELPQWLADESQALSKSSQKAMQSVSKVADLIAEKVKEGELATRIAEPALGELGFYVQ RLENLTQVWQLMAKPNKDKGAPLARWLEVSPEREGDYLVSVSPLEIGWQLDQQLWSRCVGAILVSATLRALNSFGFFCRQ AGISDKAEDGVQFLALASPFDYPTQGELLIPKMEMEPQAEGYTAYLAKKVLCYLQADKANLVLFASYWQMREVAESLKVE FTKRGWALQVQGEKSRSEILNKHKKLIEKQKTSVLFGTGSFSEGLDLPGELLENLIITKIPFAVPTSPVEQAHAEYIQEL GGNPFMQITVPEASKKLIQSVGRLLRKERDSGRVVILDRRVVSKRYGKALLDALPPFKRTIEY >Mature_703_residues MLPSRHRTLDTSMLTKNIQDSIRNSYQNLQNQLENFIPRRAQNFLVAEMAKTLCGAYHKSTQMLVAEAGTGIGKSLSYLM AVIPVAVVNKRKVVISTATVALQEQLLNKDLPLYRRISDQNFSFILAKGRQRYCCSERLAAACGIDDGQIALFESKPKPH ETELLAELHTALSQGKWDGDRDGWPSPISDELWSVIVSDKHSCNGSFSVHRHCPFQKARSELDKADVIIANHSLVMADAD LGGGVILPAPEETIYVFDEAHHLPTVAREHASAAATLKGAASWLEKLNQSLSKFTALGDEKRAERFAEEARTAIQYLIPT LNQLPKQFMAEQFVEGIYRFEHGELPQWLADESQALSKSSQKAMQSVSKVADLIAEKVKEGELATRIAEPALGELGFYVQ RLENLTQVWQLMAKPNKDKGAPLARWLEVSPEREGDYLVSVSPLEIGWQLDQQLWSRCVGAILVSATLRALNSFGFFCRQ AGISDKAEDGVQFLALASPFDYPTQGELLIPKMEMEPQAEGYTAYLAKKVLCYLQADKANLVLFASYWQMREVAESLKVE FTKRGWALQVQGEKSRSEILNKHKKLIEKQKTSVLFGTGSFSEGLDLPGELLENLIITKIPFAVPTSPVEQAHAEYIQEL GGNPFMQITVPEASKKLIQSVGRLLRKERDSGRVVILDRRVVSKRYGKALLDALPPFKRTIEY
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787018, Length=714, Percent_Identity=34.8739495798319, Blast_Score=344, Evalue=1e-95, Organism=Escherichia coli, GI1788110, Length=682, Percent_Identity=28.7390029325513, Blast_Score=211, Evalue=9e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 78490; Mature: 78490
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPSRHRTLDTSMLTKNIQDSIRNSYQNLQNQLENFIPRRAQNFLVAEMAKTLCGAYHKS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TQMLVAEAGTGIGKSLSYLMAVIPVAVVNKRKVVISTATVALQEQLLNKDLPLYRRISDQ HHEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCHHHHHCCC NFSFILAKGRQRYCCSERLAAACGIDDGQIALFESKPKPHETELLAELHTALSQGKWDGD CCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC RDGWPSPISDELWSVIVSDKHSCNGSFSVHRHCPFQKARSELDKADVIIANHSLVMADAD CCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHCCCCCEEEECCEEEEEECC LGGGVILPAPEETIYVFDEAHHLPTVAREHASAAATLKGAASWLEKLNQSLSKFTALGDE CCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH KRAERFAEEARTAIQYLIPTLNQLPKQFMAEQFVEGIYRFEHGELPQWLADESQALSKSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH QKAMQSVSKVADLIAEKVKEGELATRIAEPALGELGFYVQRLENLTQVWQLMAKPNKDKG HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC APLARWLEVSPEREGDYLVSVSPLEIGWQLDQQLWSRCVGAILVSATLRALNSFGFFCRQ CCHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGISDKAEDGVQFLALASPFDYPTQGELLIPKMEMEPQAEGYTAYLAKKVLCYLQADKAN CCCCCCHHCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCC LVLFASYWQMREVAESLKVEFTKRGWALQVQGEKSRSEILNKHKKLIEKQKTSVLFGTGS EEEEHHHHHHHHHHHHHHEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCEEEEECCC FSEGLDLPGELLENLIITKIPFAVPTSPVEQAHAEYIQELGGNPFMQITVPEASKKLIQS CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH VGRLLRKERDSGRVVILDRRVVSKRYGKALLDALPPFKRTIEY HHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCHHHHCCC >Mature Secondary Structure MLPSRHRTLDTSMLTKNIQDSIRNSYQNLQNQLENFIPRRAQNFLVAEMAKTLCGAYHKS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TQMLVAEAGTGIGKSLSYLMAVIPVAVVNKRKVVISTATVALQEQLLNKDLPLYRRISDQ HHEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCHHHHHCCC NFSFILAKGRQRYCCSERLAAACGIDDGQIALFESKPKPHETELLAELHTALSQGKWDGD CCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC RDGWPSPISDELWSVIVSDKHSCNGSFSVHRHCPFQKARSELDKADVIIANHSLVMADAD CCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHCCCCCEEEECCEEEEEECC LGGGVILPAPEETIYVFDEAHHLPTVAREHASAAATLKGAASWLEKLNQSLSKFTALGDE CCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH KRAERFAEEARTAIQYLIPTLNQLPKQFMAEQFVEGIYRFEHGELPQWLADESQALSKSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH QKAMQSVSKVADLIAEKVKEGELATRIAEPALGELGFYVQRLENLTQVWQLMAKPNKDKG HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC APLARWLEVSPEREGDYLVSVSPLEIGWQLDQQLWSRCVGAILVSATLRALNSFGFFCRQ CCHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGISDKAEDGVQFLALASPFDYPTQGELLIPKMEMEPQAEGYTAYLAKKVLCYLQADKAN CCCCCCHHCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCC LVLFASYWQMREVAESLKVEFTKRGWALQVQGEKSRSEILNKHKKLIEKQKTSVLFGTGS EEEEHHHHHHHHHHHHHHEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCEEEEECCC FSEGLDLPGELLENLIITKIPFAVPTSPVEQAHAEYIQELGGNPFMQITVPEASKKLIQS CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH VGRLLRKERDSGRVVILDRRVVSKRYGKALLDALPPFKRTIEY HHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396546; 8385320 [H]