| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is 227081735
Identifier: 227081735
GI number: 227081735
Start: 1640487
End: 1643075
Strand: Direct
Name: 227081735
Synonym: VCM66_1522
Alternate gene names: NA
Gene position: 1640487-1643075 (Clockwise)
Preceding gene: 227081734
Following gene: 227081740
Centisome position: 56.71
GC content: 54.07
Gene sequence:
>2589_bases TTGGCCCGTGCAATTAACTCTGCCTACCGCTCTTTCATCAACTCAAGCGCAACCGACGACAGGAGAACGCGTATGAATGC GCCACGTTCGCTCTCAGCTTTAAGCACCACCGCTAACCCAGCATTATCGACACTTGTCGAACAAGTCTGCGCCTTGATTG CTCCTAACTGGCCGCTGGATCGCATGATTGCGGTGAGCCCTTATTGGAAACGGATTGATAAGCCCTTTGCACAAGCCGCC GCCGAGCTCAAACAATTGGCCGCCTCCCCCATGACCATGACGCTCAGTGATTACCACCTTCGTTGGCAAAATAAGCAAAT CCAATCAGCGGATTTGCAACAAGCCATCGCTGAACAAAACAGTGACCTTAGCGAATCTACCTTGATTGCCGCTTTACAAC AGCCCACAGCGCCGAGTCATCCTTGGCCATTGCTGTGCGACACCGTCGATAGCCGGCGTGATCTTGAGCATCATCCCGCA TGGAATGACGCCATCACCCATCAAATTTCGCAATTTTGCGCCGCCTATTTTGACCATCATCAAGCCGATTGGAGCCCAGA TCAGCAAACCGGACTCTTTGCCACTTGGCGTGAGGCGATGATCCACGATCGCAGCATTACGCTGCTGCTCAACGAGACAA GCGTAAAACAAAAAGCCACCAAGCTTCCCGAGGATGCTATGGCCGCCATCGAGCAAACTCTAGCGCAACTCGCTATTGCC CCTGCGCAACAAGAAACGTATTTACAAGCCGTGTTAATGCGCATCAGTGGCTGGGCATCCTGGTGTGCTTATCTCGCATG GCAGGCAGGGTTTGAGGGTCGGCACGATGAGCACCTGCGCGATCTGTTGGCGATTCGTCTCTGCTGGGAGAACTTACTTG ATGATGGTGAGCGCGGTATGGGCTCTGTGTGGTTACAATGGCAGCAATCTTGGGCACCGCGCCAATCGTGCGAGGAGGAT CGCGCACTACGCATTGCGCTACTGTGGCAACGCAGTGCGGAAATCGCCTATCAACGCCAACTTTTTGCTGCGCTGACATC AGCACAAGAGTCGGCTCCCCAATCAAGTTATCCCGAGGTGCAAGCGGCTTTTTGTATCGATGTGCGTTCAGAAGTCATTC GCCGCCACTTAGAAGCGCAATCACCCCATATTCAAACCCTTGGCTTCGCAGGCTTTTTTGGCTTACCGATCCGCTATCAG TTATTGGGCACCGAAGCAAGCCGCCCACAGTTACCGGGCTTATTAGCGCCGAGCTTGATCGTCTCTGACAGCACAGGGAA TGAAGATCAAGACGCGAAATTGGCCTTGCGTCGCCGTGCTCGACTCAAGCGACACTTTAGCTGGCGCGCGTTTCATCACC TCCCCGCCTCCACGTTTACTCTGGTGGAAACCACGGGGTTGGCGTATTTAACCAAGCTCCTTAAACGCACCTTATCCTAC CCTGCATTGAGTGCATCGGTGGAGCGTTTCGCCTTTACGGAACATGAGTGGCAGAGTGTCAAACCGCAATTCACGCGCGA TCCACAGACGTTAGCGCAGCGTGCTCAAATGGCGGCCAACATTCTGCGAGCGTTGGGGATCGCCACCGAGCAAGCACGCT TGGTGCTACTCGTGGGGCACGGCTCACAGACGCAAAATAATCCGCAGCGTGCAGGGCTGGATTGTGGAGCCTGCTGCGGT CAAAGCGGCGAAGTCAACGCTCGCACGTTAGCAGCATTGCTAAATGATCAGGCGGTGCGCCAAGCGTTGCCTGAATATGG AATTTCGCTGCGCGATGACGTCCACTTTATCGCGGCGCTACACAACACCACGACAGAAGCGATGAGGCTTTTTGATCGCC ATGAGATCCCAACAAGCCATCGCGAGGCGCTAGAACAACTTGATCAGCAGCTCACGGCCGCCAGCCATGGCGCACGTCAA GAACGCGCGCCAAGTCTTGAATTGAATCACAACCACCAAGCGCCTCCAAGCAAGGACAACGCCCTATCTGCCCAGCAGTT GGAGCAAGCGTTTCTGCGTCGAGCCCATGATTGGGCGCAAACTCGCCCTGAATGGGGGCTGACCAACAATGCCGCTTTTA TCATTGCACCGCGCCAACGTTCAAAGCAGGCGAAACTCGATGGTCGAGTGTTTTTGCATGAATACCAACCGGAGCGCGAT CCCGAAGGGCAATTACTGACACAAATTATGACAGCCCCAATGCTGGTCACACACTGGATTAACATGCAGTATTTTGCCTC CACCGTCGATAATCGCCGCTTCGGCAGTGGCAATAAAACCTTGCATAATGTGGTAGGAGGAAATATCGGTCTTTTTGAAG GCAACGGAGGCGATCTGCGCTGTGGCTTAGCCCTGCAATCGCTGCATGATGGCCAAGGGTGGCGACATGAAGCCTTACGT CTCACTGTGGTGATTGATGCGCCGCGCGAACGGATTGAGCAAGTGATGGCTTCACACCGCGTGGTTGAACATTTGGTTAA GCATGAATGGCTCTATCTGGCCCGTTTTGCTGATCAAGGGATTGAGATATATCTCCAAGGCACTTGGCAACGCATCACTC AGCCCAGCTCAGATTCCAGTGCGAGATAA
Upstream 100 bases:
>100_bases TCTGCCTCTACCCCAAAAGCCGTTTATCACTGTGGCTCTATCCTTGGGTTTACCATGGTTTTTATCTTGATGAGACTTTT ACGCGCCTGACCTTCAAATA
Downstream 100 bases:
>100_bases AATATTGTTGGCCATCTAGGATGGCCAACAATATTTAAAGCGTTTTATAAACCAATCACACCACATACGATGCGCGCACC ACCGCCACCCAAAGGCATTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 862; Mature: 861
Protein sequence:
>862_residues MARAINSAYRSFINSSATDDRRTRMNAPRSLSALSTTANPALSTLVEQVCALIAPNWPLDRMIAVSPYWKRIDKPFAQAA AELKQLAASPMTMTLSDYHLRWQNKQIQSADLQQAIAEQNSDLSESTLIAALQQPTAPSHPWPLLCDTVDSRRDLEHHPA WNDAITHQISQFCAAYFDHHQADWSPDQQTGLFATWREAMIHDRSITLLLNETSVKQKATKLPEDAMAAIEQTLAQLAIA PAQQETYLQAVLMRISGWASWCAYLAWQAGFEGRHDEHLRDLLAIRLCWENLLDDGERGMGSVWLQWQQSWAPRQSCEED RALRIALLWQRSAEIAYQRQLFAALTSAQESAPQSSYPEVQAAFCIDVRSEVIRRHLEAQSPHIQTLGFAGFFGLPIRYQ LLGTEASRPQLPGLLAPSLIVSDSTGNEDQDAKLALRRRARLKRHFSWRAFHHLPASTFTLVETTGLAYLTKLLKRTLSY PALSASVERFAFTEHEWQSVKPQFTRDPQTLAQRAQMAANILRALGIATEQARLVLLVGHGSQTQNNPQRAGLDCGACCG QSGEVNARTLAALLNDQAVRQALPEYGISLRDDVHFIAALHNTTTEAMRLFDRHEIPTSHREALEQLDQQLTAASHGARQ ERAPSLELNHNHQAPPSKDNALSAQQLEQAFLRRAHDWAQTRPEWGLTNNAAFIIAPRQRSKQAKLDGRVFLHEYQPERD PEGQLLTQIMTAPMLVTHWINMQYFASTVDNRRFGSGNKTLHNVVGGNIGLFEGNGGDLRCGLALQSLHDGQGWRHEALR LTVVIDAPRERIEQVMASHRVVEHLVKHEWLYLARFADQGIEIYLQGTWQRITQPSSDSSAR
Sequences:
>Translated_862_residues MARAINSAYRSFINSSATDDRRTRMNAPRSLSALSTTANPALSTLVEQVCALIAPNWPLDRMIAVSPYWKRIDKPFAQAA AELKQLAASPMTMTLSDYHLRWQNKQIQSADLQQAIAEQNSDLSESTLIAALQQPTAPSHPWPLLCDTVDSRRDLEHHPA WNDAITHQISQFCAAYFDHHQADWSPDQQTGLFATWREAMIHDRSITLLLNETSVKQKATKLPEDAMAAIEQTLAQLAIA PAQQETYLQAVLMRISGWASWCAYLAWQAGFEGRHDEHLRDLLAIRLCWENLLDDGERGMGSVWLQWQQSWAPRQSCEED RALRIALLWQRSAEIAYQRQLFAALTSAQESAPQSSYPEVQAAFCIDVRSEVIRRHLEAQSPHIQTLGFAGFFGLPIRYQ LLGTEASRPQLPGLLAPSLIVSDSTGNEDQDAKLALRRRARLKRHFSWRAFHHLPASTFTLVETTGLAYLTKLLKRTLSY PALSASVERFAFTEHEWQSVKPQFTRDPQTLAQRAQMAANILRALGIATEQARLVLLVGHGSQTQNNPQRAGLDCGACCG QSGEVNARTLAALLNDQAVRQALPEYGISLRDDVHFIAALHNTTTEAMRLFDRHEIPTSHREALEQLDQQLTAASHGARQ ERAPSLELNHNHQAPPSKDNALSAQQLEQAFLRRAHDWAQTRPEWGLTNNAAFIIAPRQRSKQAKLDGRVFLHEYQPERD PEGQLLTQIMTAPMLVTHWINMQYFASTVDNRRFGSGNKTLHNVVGGNIGLFEGNGGDLRCGLALQSLHDGQGWRHEALR LTVVIDAPRERIEQVMASHRVVEHLVKHEWLYLARFADQGIEIYLQGTWQRITQPSSDSSAR >Mature_861_residues ARAINSAYRSFINSSATDDRRTRMNAPRSLSALSTTANPALSTLVEQVCALIAPNWPLDRMIAVSPYWKRIDKPFAQAAA ELKQLAASPMTMTLSDYHLRWQNKQIQSADLQQAIAEQNSDLSESTLIAALQQPTAPSHPWPLLCDTVDSRRDLEHHPAW NDAITHQISQFCAAYFDHHQADWSPDQQTGLFATWREAMIHDRSITLLLNETSVKQKATKLPEDAMAAIEQTLAQLAIAP AQQETYLQAVLMRISGWASWCAYLAWQAGFEGRHDEHLRDLLAIRLCWENLLDDGERGMGSVWLQWQQSWAPRQSCEEDR ALRIALLWQRSAEIAYQRQLFAALTSAQESAPQSSYPEVQAAFCIDVRSEVIRRHLEAQSPHIQTLGFAGFFGLPIRYQL LGTEASRPQLPGLLAPSLIVSDSTGNEDQDAKLALRRRARLKRHFSWRAFHHLPASTFTLVETTGLAYLTKLLKRTLSYP ALSASVERFAFTEHEWQSVKPQFTRDPQTLAQRAQMAANILRALGIATEQARLVLLVGHGSQTQNNPQRAGLDCGACCGQ SGEVNARTLAALLNDQAVRQALPEYGISLRDDVHFIAALHNTTTEAMRLFDRHEIPTSHREALEQLDQQLTAASHGARQE RAPSLELNHNHQAPPSKDNALSAQQLEQAFLRRAHDWAQTRPEWGLTNNAAFIIAPRQRSKQAKLDGRVFLHEYQPERDP EGQLLTQIMTAPMLVTHWINMQYFASTVDNRRFGSGNKTLHNVVGGNIGLFEGNGGDLRCGLALQSLHDGQGWRHEALRL TVVIDAPRERIEQVMASHRVVEHLVKHEWLYLARFADQGIEIYLQGTWQRITQPSSDSSAR
Specific function: Unknown
COG id: COG3002
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0753 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1522_VIBCM (C3LMQ9)
Other databases:
- EMBL: CP001233 - RefSeq: YP_002810286.1 - GeneID: 7772796 - GenomeReviews: CP001233_GR - KEGG: vcm:VCM66_1522 - OMA: FAEDWSE - ProtClustDB: CLSK874437 - HAMAP: MF_01871 - InterPro: IPR018752
Pfam domain/function: PF10070 DUF2309
EC number: NA
Molecular weight: Translated: 96975; Mature: 96844
Theoretical pI: Translated: 7.12; Mature: 7.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARAINSAYRSFINSSATDDRRTRMNAPRSLSALSTTANPALSTLVEQVCALIAPNWPLD CCCHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCHH RMIAVSPYWKRIDKPFAQAAAELKQLAASPMTMTLSDYHLRWQNKQIQSADLQQAIAEQN HEEECCHHHHHHCCHHHHHHHHHHHHHCCCCEEEECHHEEEECCCCHHHHHHHHHHHHCC SDLSESTLIAALQQPTAPSHPWPLLCDTVDSRRDLEHHPAWNDAITHQISQFCAAYFDHH CCCHHHHHHHHHHCCCCCCCCCCEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC QADWSPDQQTGLFATWREAMIHDRSITLLLNETSVKQKATKLPEDAMAAIEQTLAQLAIA CCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHC PAQQETYLQAVLMRISGWASWCAYLAWQAGFEGRHDEHLRDLLAIRLCWENLLDDGERGM CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC GSVWLQWQQSWAPRQSCEEDRALRIALLWQRSAEIAYQRQLFAALTSAQESAPQSSYPEV CHHHHHHHHCCCCHHCCCHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH QAAFCIDVRSEVIRRHLEAQSPHIQTLGFAGFFGLPIRYQLLGTEASRPQLPGLLAPSLI HHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHCCCEEEEEECCCCCCCCCCCCCCCCEE VSDSTGNEDQDAKLALRRRARLKRHFSWRAFHHLPASTFTLVETTGLAYLTKLLKRTLSY EECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCC PALSASVERFAFTEHEWQSVKPQFTRDPQTLAQRAQMAANILRALGIATEQARLVLLVGH CHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC GSQTQNNPQRAGLDCGACCGQSGEVNARTLAALLNDQAVRQALPEYGISLRDDVHFIAAL CCCCCCCCHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH HNTTTEAMRLFDRHEIPTSHREALEQLDQQLTAASHGARQERAPSLELNHNHQAPPSKDN HCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCC ALSAQQLEQAFLRRAHDWAQTRPEWGLTNNAAFIIAPRQRSKQAKLDGRVFLHEYQPERD CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCC PEGQLLTQIMTAPMLVTHWINMQYFASTVDNRRFGSGNKTLHNVVGGNIGLFEGNGGDLR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEECCCCCEE CGLALQSLHDGQGWRHEALRLTVVIDAPRERIEQVMASHRVVEHLVKHEWLYLARFADQG EHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IEIYLQGTWQRITQPSSDSSAR EEEEEEECHHHHCCCCCCCCCC >Mature Secondary Structure ARAINSAYRSFINSSATDDRRTRMNAPRSLSALSTTANPALSTLVEQVCALIAPNWPLD CCHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCHH RMIAVSPYWKRIDKPFAQAAAELKQLAASPMTMTLSDYHLRWQNKQIQSADLQQAIAEQN HEEECCHHHHHHCCHHHHHHHHHHHHHCCCCEEEECHHEEEECCCCHHHHHHHHHHHHCC SDLSESTLIAALQQPTAPSHPWPLLCDTVDSRRDLEHHPAWNDAITHQISQFCAAYFDHH CCCHHHHHHHHHHCCCCCCCCCCEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC QADWSPDQQTGLFATWREAMIHDRSITLLLNETSVKQKATKLPEDAMAAIEQTLAQLAIA CCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHC PAQQETYLQAVLMRISGWASWCAYLAWQAGFEGRHDEHLRDLLAIRLCWENLLDDGERGM CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC GSVWLQWQQSWAPRQSCEEDRALRIALLWQRSAEIAYQRQLFAALTSAQESAPQSSYPEV CHHHHHHHHCCCCHHCCCHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH QAAFCIDVRSEVIRRHLEAQSPHIQTLGFAGFFGLPIRYQLLGTEASRPQLPGLLAPSLI HHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHCCCEEEEEECCCCCCCCCCCCCCCCEE VSDSTGNEDQDAKLALRRRARLKRHFSWRAFHHLPASTFTLVETTGLAYLTKLLKRTLSY EECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCC PALSASVERFAFTEHEWQSVKPQFTRDPQTLAQRAQMAANILRALGIATEQARLVLLVGH CHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC GSQTQNNPQRAGLDCGACCGQSGEVNARTLAALLNDQAVRQALPEYGISLRDDVHFIAAL CCCCCCCCHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH HNTTTEAMRLFDRHEIPTSHREALEQLDQQLTAASHGARQERAPSLELNHNHQAPPSKDN HCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCC ALSAQQLEQAFLRRAHDWAQTRPEWGLTNNAAFIIAPRQRSKQAKLDGRVFLHEYQPERD CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCC PEGQLLTQIMTAPMLVTHWINMQYFASTVDNRRFGSGNKTLHNVVGGNIGLFEGNGGDLR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEECCCCCEE CGLALQSLHDGQGWRHEALRLTVVIDAPRERIEQVMASHRVVEHLVKHEWLYLARFADQG EHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IEIYLQGTWQRITQPSSDSSAR EEEEEEECHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA