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The map label for this gene is ycbK [H]

Identifier: 227081441

GI number: 227081441

Start: 1302193

End: 1302741

Strand: Direct

Name: ycbK [H]

Synonym: VCM66_1224

Alternate gene names: 227081441

Gene position: 1302193-1302741 (Clockwise)

Preceding gene: 227081440

Following gene: 227081442

Centisome position: 45.02

GC content: 48.09

Gene sequence:

>549_bases
GTGCAAACAACACGTCGAGATTTCTTAAAACTGACTGCGGGCGGATTAATTTTAGCCGCCTGTACGCCCAGCATCGCGTT
CGCGAGTTATGCCGCCAAGCCAAGAGAATTGGCATTAAGCAACTTACATACAGGCGAAAGCATTGAAACGCGCTATTTTA
ATGGCAAAAATTACGTTCGTTCTGAATTGAAACGGCTGAATCATTTATGCCGTGATTTTCGTCGTGACGAAGTGCATGCC
ATGGATAAGTTGCTGTTTGATCAACTGTGCCAAATCCAATTGCTACTTGGCACTCAAGCCGAGGTGCATATTGTCTCTGG
TTACCGCTCTCCCGCGACCAACAAGCAGCTACGCAGTAAATCAAAAGGCGTGGCGAAGAAAAGTTACCACATGTCTGGGC
AGGCCATCGATTTCCGTTTGGATGGTGTGTCGCTAAAGAAAATCCGTGAAGCGGCGATCAGTTTGCAAGCGGGCGGTGTT
GGTTACTATCCGAAAAGCCAATTTATCCACATTGATACCGGCCCTGTACGCCAATGGGTCGGTGCCTAA

Upstream 100 bases:

>100_bases
TCTAGAATCAGTGATAGTTAGCACGTTTTATGCATTTGATATCGAACCCAGAGTCCGGTACTTTCCGTATCGATAGAGCC
CAGTTCGGTAGGTAATTAAA

Downstream 100 bases:

>100_bases
CTTGTCAAAGGCGGGCGTTAATGACATAGTGCCTGCCAGTTAAGAATCAGACAGGATAGGTTTATGTCTTTACAATATCA
GGTGGTGCCTGTTACGGCCT

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MQTTRRDFLKLTAGGLILAACTPSIAFASYAAKPRELALSNLHTGESIETRYFNGKNYVRSELKRLNHLCRDFRRDEVHA
MDKLLFDQLCQIQLLLGTQAEVHIVSGYRSPATNKQLRSKSKGVAKKSYHMSGQAIDFRLDGVSLKKIREAAISLQAGGV
GYYPKSQFIHIDTGPVRQWVGA

Sequences:

>Translated_182_residues
MQTTRRDFLKLTAGGLILAACTPSIAFASYAAKPRELALSNLHTGESIETRYFNGKNYVRSELKRLNHLCRDFRRDEVHA
MDKLLFDQLCQIQLLLGTQAEVHIVSGYRSPATNKQLRSKSKGVAKKSYHMSGQAIDFRLDGVSLKKIREAAISLQAGGV
GYYPKSQFIHIDTGPVRQWVGA
>Mature_182_residues
MQTTRRDFLKLTAGGLILAACTPSIAFASYAAKPRELALSNLHTGESIETRYFNGKNYVRSELKRLNHLCRDFRRDEVHA
MDKLLFDQLCQIQLLLGTQAEVHIVSGYRSPATNKQLRSKSKGVAKKSYHMSGQAIDFRLDGVSLKKIREAAISLQAGGV
GYYPKSQFIHIDTGPVRQWVGA

Specific function: Unknown

COG id: COG3108

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1666 [H]

Homologues:

Organism=Escherichia coli, GI1787157, Length=181, Percent_Identity=53.0386740331492, Blast_Score=204, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010275
- InterPro:   IPR009045
- InterPro:   IPR006311 [H]

Pfam domain/function: PF05951 Peptidase_M15_2 [H]

EC number: NA

Molecular weight: Translated: 20341; Mature: 20341

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTTRRDFLKLTAGGLILAACTPSIAFASYAAKPRELALSNLHTGESIETRYFNGKNYVR
CCCHHHHHHHHHCCCEEEEECCCHHHHHHHCCCHHHHHHHHCCCCCCCEEEEECCHHHHH
SELKRLNHLCRDFRRDEVHAMDKLLFDQLCQIQLLLGTQAEVHIVSGYRSPATNKQLRSK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCHHHHHH
SKGVAKKSYHMSGQAIDFRLDGVSLKKIREAAISLQAGGVGYYPKSQFIHIDTGPVRQWV
HCCCHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHH
GA
CC
>Mature Secondary Structure
MQTTRRDFLKLTAGGLILAACTPSIAFASYAAKPRELALSNLHTGESIETRYFNGKNYVR
CCCHHHHHHHHHCCCEEEEECCCHHHHHHHCCCHHHHHHHHCCCCCCCEEEEECCHHHHH
SELKRLNHLCRDFRRDEVHAMDKLLFDQLCQIQLLLGTQAEVHIVSGYRSPATNKQLRSK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCHHHHHH
SKGVAKKSYHMSGQAIDFRLDGVSLKKIREAAISLQAGGVGYYPKSQFIHIDTGPVRQWV
HCCCHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHH
GA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]