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The map label for this gene is ycbB [H]

Identifier: 227081440

GI number: 227081440

Start: 1300473

End: 1302047

Strand: Direct

Name: ycbB [H]

Synonym: VCM66_1223

Alternate gene names: 227081440

Gene position: 1300473-1302047 (Clockwise)

Preceding gene: 227081439

Following gene: 227081441

Centisome position: 44.96

GC content: 47.68

Gene sequence:

>1575_bases
TTGATGAAAAGCCGAGTCGTTGCCGCTATCGCATTGTTATTCTTTGTTATTCCGTGTTCTGCCACCCAGCGTTTTGTTGA
ATTGGGGTGGATTGATAGCACTTCGCCGGTCAATGAACAGATCACCAACCCGGCTTTGGTTGAGCAAATCTATCACAGTA
ACAATGATCAGTTACTGTGGAGCGATCTTGCCACAGCGAACCATTTTGAAGCTCAGCTTGAGGTGATTCACCGTGCGAGT
TTCAGCCCTTTATTTAGCCGACAACTTTTCGCGCTCAAAAGCTATCGTCAGCAAGATAGATGGCATGAGTATGATGTGTT
AGCGACCGACACTTTACTGCAATACCTCAGCTATGCTGAGCAGGCACCAAAAGTCGGTATTGCTTGGTTTTTTGAAGGTC
AACTTGATCAACCTCTTGCTCCGCCGAGTGAAGAGGCGCAACTGGCTTTGCATATGGCGATCGGTAACCAGTCGCTCGCT
CGCTTAATGGATGAATACACCCCACAAGACCCTGCTTATCAACAACTGCTGCAAGCGTATCAATCACTCTCGAGCATTGA
GTTTAATGAGGTGGCACTATACGAGCAGATGGAGCGGCTTAAGCGTCCGGGTGACCCATTAAGTCACCGTGAAGCTTTAG
TGCAGCGTTTAGCTCTGGTGAATCTGGATACCACATCCATCTTGAATGATGTGGCCTATTACGACGCCTCGCTTGAAAAA
CCGATCAAGCAGTTTCAGAAGATGCATGGCTTGCAGACTGATGGTGTGATTGGCCCACAAACCATGAAGTGGTTGAACAC
ATCCGTAACTGAGCGCCTTGCCTTATTAGCGCTTAATGCAGAGCGGATTCGCTTATGGCCAACCCAGCAAGACAGCATGA
TTGTGGTCAATGTGCCCGGTTTTGATATGAAGTATTGGGATGCCGGCCGCGAAGTCTTTGAATCCAAGGTGGTGGTAGGC
AAAACCACCAGACCGACACCGGTGATGAATACCAAACTCGATTCACTGATCATCAATCCAACTTGGAATGTGCCGCATAA
AATCATGGTGGAAGATATCCTACCAATGGTGAAACGTGATAGTGAGTATCTCGCCAATCATCATATGGAAATCATTCGTG
GTTGGAGCGATCCAGAAGTGATTGACCCTGCGCTGATTGATTGGGAAGCCGTTGAACCGGAAACCTTCCCATACCGTCTG
CGCCAACAGGCTGGCGTGCAAAATGCGCTTGGGACCTATAAGTTTAATACGCCCAATTCACGCGCTATCTATCTGCATGA
TACGCCGAGCAAGCATCTATTTAATAACGCGTCTCGGGCGTTCAGTTCTGGCTGTATTCGGGTAGAAAACGCTGAAAAGT
TTGCGCAAACCTTGCTCGCTAATCAGGGCATTACGCTCGACGATTTTCCAGTGAGCACCCAAGCGATTGCGCTCAAAAAG
CGTATTCCAGTCCACATCATCTATCAGACCGTGTGGTATGAAGAAGGTGTGCTGCATTATCGTGATGATATTTATCACTA
TGATGCTTTAGCACTCGGCAATGGTGACGCGTCTCCAAATTTGACTAAAATTTGA

Upstream 100 bases:

>100_bases
GACGATAAAGATGAGACACGAGTGAAAATAGTCCTATCAATAGCTTAATTTTGCGGCTGAGTTTTGCCATACTTAGTGCA
TCTTCAGCCAGTAGGGCGTT

Downstream 100 bases:

>100_bases
CAGCAGATATTTTTCCTTTCTGCTCAAGGAATAAGCGAGATTCTCTCTAGAATCAGTGATAGTTAGCACGTTTTATGCAT
TTGATATCGAACCCAGAGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MMKSRVVAAIALLFFVIPCSATQRFVELGWIDSTSPVNEQITNPALVEQIYHSNNDQLLWSDLATANHFEAQLEVIHRAS
FSPLFSRQLFALKSYRQQDRWHEYDVLATDTLLQYLSYAEQAPKVGIAWFFEGQLDQPLAPPSEEAQLALHMAIGNQSLA
RLMDEYTPQDPAYQQLLQAYQSLSSIEFNEVALYEQMERLKRPGDPLSHREALVQRLALVNLDTTSILNDVAYYDASLEK
PIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSMIVVNVPGFDMKYWDAGREVFESKVVVG
KTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRL
RQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPVSTQAIALKK
RIPVHIIYQTVWYEEGVLHYRDDIYHYDALALGNGDASPNLTKI

Sequences:

>Translated_524_residues
MMKSRVVAAIALLFFVIPCSATQRFVELGWIDSTSPVNEQITNPALVEQIYHSNNDQLLWSDLATANHFEAQLEVIHRAS
FSPLFSRQLFALKSYRQQDRWHEYDVLATDTLLQYLSYAEQAPKVGIAWFFEGQLDQPLAPPSEEAQLALHMAIGNQSLA
RLMDEYTPQDPAYQQLLQAYQSLSSIEFNEVALYEQMERLKRPGDPLSHREALVQRLALVNLDTTSILNDVAYYDASLEK
PIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSMIVVNVPGFDMKYWDAGREVFESKVVVG
KTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRL
RQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPVSTQAIALKK
RIPVHIIYQTVWYEEGVLHYRDDIYHYDALALGNGDASPNLTKI
>Mature_524_residues
MMKSRVVAAIALLFFVIPCSATQRFVELGWIDSTSPVNEQITNPALVEQIYHSNNDQLLWSDLATANHFEAQLEVIHRAS
FSPLFSRQLFALKSYRQQDRWHEYDVLATDTLLQYLSYAEQAPKVGIAWFFEGQLDQPLAPPSEEAQLALHMAIGNQSLA
RLMDEYTPQDPAYQQLLQAYQSLSSIEFNEVALYEQMERLKRPGDPLSHREALVQRLALVNLDTTSILNDVAYYDASLEK
PIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSMIVVNVPGFDMKYWDAGREVFESKVVVG
KTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRL
RQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPVSTQAIALKK
RIPVHIIYQTVWYEEGVLHYRDDIYHYDALALGNGDASPNLTKI

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=509, Percent_Identity=32.6129666011788, Blast_Score=266, Evalue=2e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 59734; Mature: 59734

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKSRVVAAIALLFFVIPCSATQRFVELGWIDSTSPVNEQITNPALVEQIYHSNNDQLLW
CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCEEE
SDLATANHFEAQLEVIHRASFSPLFSRQLFALKSYRQQDRWHEYDVLATDTLLQYLSYAE
HHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
QAPKVGIAWFFEGQLDQPLAPPSEEAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAY
HCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHH
QSLSSIEFNEVALYEQMERLKRPGDPLSHREALVQRLALVNLDTTSILNDVAYYDASLEK
HHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
PIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSMIVVNVPG
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCEEEEECCC
FDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRD
CCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCC
SEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNS
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHCCCEEECCCCC
RAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPVSTQAIALKK
CEEEEECCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
RIPVHIIYQTVWYEEGVLHYRDDIYHYDALALGNGDASPNLTKI
CCCEEEEEEEHHHHCCCCHHHCCCEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MMKSRVVAAIALLFFVIPCSATQRFVELGWIDSTSPVNEQITNPALVEQIYHSNNDQLLW
CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCEEE
SDLATANHFEAQLEVIHRASFSPLFSRQLFALKSYRQQDRWHEYDVLATDTLLQYLSYAE
HHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
QAPKVGIAWFFEGQLDQPLAPPSEEAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAY
HCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHH
QSLSSIEFNEVALYEQMERLKRPGDPLSHREALVQRLALVNLDTTSILNDVAYYDASLEK
HHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
PIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSMIVVNVPG
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCEEEEECCC
FDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRD
CCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCC
SEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNS
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHCCCEEECCCCC
RAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPVSTQAIALKK
CEEEEECCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
RIPVHIIYQTVWYEEGVLHYRDDIYHYDALALGNGDASPNLTKI
CCCEEEEEEEHHHHCCCCHHHCCCEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]