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The map label for this gene is rimK [H]

Identifier: 227081334

GI number: 227081334

Start: 1191596

End: 1192333

Strand: Reverse

Name: rimK [H]

Synonym: VCM66_1117

Alternate gene names: 227081334

Gene position: 1192333-1191596 (Counterclockwise)

Preceding gene: 227081335

Following gene: 227081333

Centisome position: 41.22

GC content: 49.05

Gene sequence:

>738_bases
ATGTTTAAGCGAATTGCACCCTTTGCCGCATTGAGTTTGCTTTCGGGCTGCGCACTCACCAATGGCGATGAATACCATCA
AGCGACGCTCTCCGCGATTCAAAGCTCTGAAGCCAATATGACCCAAAAAATGACGAACTTAGAATCACAAATGGGTCTGC
AGAATGATTATATTGAAAGCCTTGAAAAACAAATTACTGAGCTAAAAACTCAAGTTAGCCAAATTAAACTGCCCCCCCCC
CCTGCCCCGAAACGAGTCTCCACTGCGAAACCGTCTAATGATCAGAACACCGCTATCAGCAAGCCTCGCCATGATGTGGT
GCTGGGCGAAATTGAGAGCGTCACCATTGATGCGATTAAGCAAACCTTTGATGCTCGTATCGATACGGGTGCCGCCACCT
CATCACTGAACGCCGTCGATATTGAAGAATTCGAACGCAATGGCAAAAACTGGGTGCGTTTCCACCTCGCTGATGAGAAA
AACCCTAAAACAGAGGCTAACTGGATTGAAGCGCCCGTCTTGCGTTATGTGCGTATTCGTCAATCCACCAACGACAATAC
CGAGCGCCGCGCCGTTGTCGAGCTTTGGGTAAAACTGGGCTCTATTCATGAGAAAGCGCAGTTTACCCTCGCCGACCGTT
CGCAAATGACACATCCCGTGCTGCTTGGCCGCGAGTTTATCCGTGATATCGCCCTGGTCGATGTCAGTCGCAAATACATT
CAGACCGAACAAAAATAG

Upstream 100 bases:

>100_bases
CTTATTCGGGTATCACGTTACCCTTGGTAAAGGATGCGCTAAGCATCCTTTGCTATAACTTATCTATACAATCACTCATT
AGAAAATAATAAGGTCGCAA

Downstream 100 bases:

>100_bases
GCGAGACGATGACTTCGAAAATTCCTTTTTATATTTCTGTCTTTCTGCTCTTTGCTACAGGTATCACATTGAGTGTTTTG
CGCCACCAAGATTATGGTGT

Product: Ribosomal protein S6 modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MFKRIAPFAALSLLSGCALTNGDEYHQATLSAIQSSEANMTQKMTNLESQMGLQNDYIESLEKQITELKTQVSQIKLPPP
PAPKRVSTAKPSNDQNTAISKPRHDVVLGEIESVTIDAIKQTFDARIDTGAATSSLNAVDIEEFERNGKNWVRFHLADEK
NPKTEANWIEAPVLRYVRIRQSTNDNTERRAVVELWVKLGSIHEKAQFTLADRSQMTHPVLLGREFIRDIALVDVSRKYI
QTEQK

Sequences:

>Translated_245_residues
MFKRIAPFAALSLLSGCALTNGDEYHQATLSAIQSSEANMTQKMTNLESQMGLQNDYIESLEKQITELKTQVSQIKLPPP
PAPKRVSTAKPSNDQNTAISKPRHDVVLGEIESVTIDAIKQTFDARIDTGAATSSLNAVDIEEFERNGKNWVRFHLADEK
NPKTEANWIEAPVLRYVRIRQSTNDNTERRAVVELWVKLGSIHEKAQFTLADRSQMTHPVLLGREFIRDIALVDVSRKYI
QTEQK
>Mature_245_residues
MFKRIAPFAALSLLSGCALTNGDEYHQATLSAIQSSEANMTQKMTNLESQMGLQNDYIESLEKQITELKTQVSQIKLPPP
PAPKRVSTAKPSNDQNTAISKPRHDVVLGEIESVTIDAIKQTFDARIDTGAATSSLNAVDIEEFERNGKNWVRFHLADEK
NPKTEANWIEAPVLRYVRIRQSTNDNTERRAVVELWVKLGSIHEKAQFTLADRSQMTHPVLLGREFIRDIALVDVSRKYI
QTEQK

Specific function: Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6 [H]

COG id: COG4067

COG function: function code O; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ATP-grasp domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011761
- InterPro:   IPR013651
- InterPro:   IPR013815
- InterPro:   IPR013816
- InterPro:   IPR008503
- InterPro:   IPR009007
- InterPro:   IPR004666 [H]

Pfam domain/function: PF05618 DUF785; PF08443 RimK [H]

EC number: NA

Molecular weight: Translated: 27603; Mature: 27603

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKRIAPFAALSLLSGCALTNGDEYHQATLSAIQSSEANMTQKMTNLESQMGLQNDYIES
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LEKQITELKTQVSQIKLPPPPAPKRVSTAKPSNDQNTAISKPRHDVVLGEIESVTIDAIK
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHH
QTFDARIDTGAATSSLNAVDIEEFERNGKNWVRFHLADEKNPKTEANWIEAPVLRYVRIR
HHHHHHCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
QSTNDNTERRAVVELWVKLGSIHEKAQFTLADRSQMTHPVLLGREFIRDIALVDVSRKYI
HCCCCCHHHHHHHHHHHHHHHHHHHHHEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
QTEQK
HCCCC
>Mature Secondary Structure
MFKRIAPFAALSLLSGCALTNGDEYHQATLSAIQSSEANMTQKMTNLESQMGLQNDYIES
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LEKQITELKTQVSQIKLPPPPAPKRVSTAKPSNDQNTAISKPRHDVVLGEIESVTIDAIK
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHH
QTFDARIDTGAATSSLNAVDIEEFERNGKNWVRFHLADEKNPKTEANWIEAPVLRYVRIR
HHHHHHCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
QSTNDNTERRAVVELWVKLGSIHEKAQFTLADRSQMTHPVLLGREFIRDIALVDVSRKYI
HCCCCCHHHHHHHHHHHHHHHHHHHHHEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
QTEQK
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA