Click here to switch to the map view.

The map label for this gene is 227081333

Identifier: 227081333

GI number: 227081333

Start: 1190079

End: 1191587

Strand: Reverse

Name: 227081333

Synonym: VCM66_1116

Alternate gene names: NA

Gene position: 1191587-1190079 (Counterclockwise)

Preceding gene: 227081334

Following gene: 227081332

Centisome position: 41.2

GC content: 49.11

Gene sequence:

>1509_bases
ATGACTTCGAAAATTCCTTTTTATATTTCTGTCTTTCTGCTCTTTGCTACAGGTATCACATTGAGTGTTTTGCGCCACCA
AGATTATGGTGTGCCATGGACCCCCGGCGAAACTCGTCAAGTCTGGGATATTGAAGCGAGGATCGAGTTTGCAGCGCAAG
GGAAGGAGGCCAAAGTTTCCCTTGCCGCACCGCTCACGCAAGAAGGCTATACCCTGATCAACGAAACCGCGTCCTCCCCG
GGCTACGGCATTTCTTACCTGAATACCGAATCAGGTCGCCGTATTGAGTGGTCGATTCGTCAGGCGAGCGGCCCGCAAAC
CATCTACTACAAAGCGCAATTTCTGGTCGACCCACAAGCCAAAGCAGTACAAATTCCGCCAACACAACCGATCACAAAAC
CCGCCTTTGATGGCCCCGAAGAGTCAGCGGCTATCGCCTTGATCGACAGTGCTTCGCAGCGCTCAGCAGATCACGTTACC
TTTGCTCGCGAGCTGATTAAAGGACTCAACGATAGCGAGAGCCAAAACGCCTCTTTGCTGCTGAATAAAATGAGTAAAGT
CGATGCCACGCAAAAACTGCTCTCTTACGCACTCGTACCCAATAAAGTGGTCGGAGTGATCCAGTTAGAAGATGGTCGCC
GCCGTCAGTCGATTCAGCATATGAATGAAGTGTGGAATGGCAGCGCTTGGATCCTGTTTAATCCAGAAACAGGCACCCAA
CCAACACATCCGAATCTTCTGGTGTGGGATGAATCCAACGTCTCTCTACTCGATGTGGTCGGTGGGCAAAATAGCCAAGT
CATGTTCAGTATGATTTCGCAAAAAGTCTCGCCTCAACAAGCCACCGACAGCAAAGTTGAGGCAGACGGTTTACTCAATC
TCTCAATCCATAGCTTGCCGCTTGAAGAGCAAGCCATGTTCAAGACCATCATGTTGATCCCGATTGGTGCCTTGATCGTG
GTGTTTTTGCGCGTGATTGTCGGACTCAAAACCTCGGGGACTTTCATGCCCGTCTTGATCGCGGTGGCCTTTGTACAAAC
CCAGCTCACCACGGGTATTGTCGGCTTTCTGCTGATTGTAGGCACTGGCTTAATCATTCGTAGTTACCTCTCCAAGCTCA
ATCTCTTACTGGTTGCACGGATTTCAGCCGTGATCATCACCGTGATTTTGATTATTTCGGTGTTTACTGTGGTGGCGTTT
AAAGTCGGTTTAACCGAAGGCTTAACCATCACTTTCTTCCCGATGATTATTCTGTCGTGGACCATTGAGCGGATGTCCAT
TCTGTGGGAAGAAGAAGGCGCTAAAGAGGTGCTACTGCAAGGCGGTGGCTCACTGTTTACCGCTATTTTGATCTATCTGG
CGATGACCAACACGTATGTACAACACTTAACCTTTAATTTCATTGGGTTACAGTTGGTTGTTCTCGCGGCAATCCTACTG
TTGGGAACTTACACCGGTTATCGAATTTCTGAGCTACGTCGCTTCAAGCCTTTGGTGGAGGAGAAGTAA

Upstream 100 bases:

>100_bases
TGACACATCCCGTGCTGCTTGGCCGCGAGTTTATCCGTGATATCGCCCTGGTCGATGTCAGTCGCAAATACATTCAGACC
GAACAAAAATAGGCGAGACG

Downstream 100 bases:

>100_bases
TGGGGTTCTCCTTTTCGTTCTCGGATTACACCTCCCCTTTTAAGCTACGCCGCAAAGGTATCATGGGGATGAATAAGCGT
AACCACGCTTATATCGGACG

Product: gonadoliberin III-related protein

Products: NA

Alternate protein names: Membrane-Associated HD Superfamily Hydrolase; GoNADoliberin III-Like Protein; Transglutaminase-Like; Transglutaminase Domain-Containing Protein

Number of amino acids: Translated: 502; Mature: 501

Protein sequence:

>502_residues
MTSKIPFYISVFLLFATGITLSVLRHQDYGVPWTPGETRQVWDIEARIEFAAQGKEAKVSLAAPLTQEGYTLINETASSP
GYGISYLNTESGRRIEWSIRQASGPQTIYYKAQFLVDPQAKAVQIPPTQPITKPAFDGPEESAAIALIDSASQRSADHVT
FARELIKGLNDSESQNASLLLNKMSKVDATQKLLSYALVPNKVVGVIQLEDGRRRQSIQHMNEVWNGSAWILFNPETGTQ
PTHPNLLVWDESNVSLLDVVGGQNSQVMFSMISQKVSPQQATDSKVEADGLLNLSIHSLPLEEQAMFKTIMLIPIGALIV
VFLRVIVGLKTSGTFMPVLIAVAFVQTQLTTGIVGFLLIVGTGLIIRSYLSKLNLLLVARISAVIITVILIISVFTVVAF
KVGLTEGLTITFFPMIILSWTIERMSILWEEEGAKEVLLQGGGSLFTAILIYLAMTNTYVQHLTFNFIGLQLVVLAAILL
LGTYTGYRISELRRFKPLVEEK

Sequences:

>Translated_502_residues
MTSKIPFYISVFLLFATGITLSVLRHQDYGVPWTPGETRQVWDIEARIEFAAQGKEAKVSLAAPLTQEGYTLINETASSP
GYGISYLNTESGRRIEWSIRQASGPQTIYYKAQFLVDPQAKAVQIPPTQPITKPAFDGPEESAAIALIDSASQRSADHVT
FARELIKGLNDSESQNASLLLNKMSKVDATQKLLSYALVPNKVVGVIQLEDGRRRQSIQHMNEVWNGSAWILFNPETGTQ
PTHPNLLVWDESNVSLLDVVGGQNSQVMFSMISQKVSPQQATDSKVEADGLLNLSIHSLPLEEQAMFKTIMLIPIGALIV
VFLRVIVGLKTSGTFMPVLIAVAFVQTQLTTGIVGFLLIVGTGLIIRSYLSKLNLLLVARISAVIITVILIISVFTVVAF
KVGLTEGLTITFFPMIILSWTIERMSILWEEEGAKEVLLQGGGSLFTAILIYLAMTNTYVQHLTFNFIGLQLVVLAAILL
LGTYTGYRISELRRFKPLVEEK
>Mature_501_residues
TSKIPFYISVFLLFATGITLSVLRHQDYGVPWTPGETRQVWDIEARIEFAAQGKEAKVSLAAPLTQEGYTLINETASSPG
YGISYLNTESGRRIEWSIRQASGPQTIYYKAQFLVDPQAKAVQIPPTQPITKPAFDGPEESAAIALIDSASQRSADHVTF
ARELIKGLNDSESQNASLLLNKMSKVDATQKLLSYALVPNKVVGVIQLEDGRRRQSIQHMNEVWNGSAWILFNPETGTQP
THPNLLVWDESNVSLLDVVGGQNSQVMFSMISQKVSPQQATDSKVEADGLLNLSIHSLPLEEQAMFKTIMLIPIGALIVV
FLRVIVGLKTSGTFMPVLIAVAFVQTQLTTGIVGFLLIVGTGLIIRSYLSKLNLLLVARISAVIITVILIISVFTVVAFK
VGLTEGLTITFFPMIILSWTIERMSILWEEEGAKEVLLQGGGSLFTAILIYLAMTNTYVQHLTFNFIGLQLVVLAAILLL
GTYTGYRISELRRFKPLVEEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55261; Mature: 55130

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKIPFYISVFLLFATGITLSVLRHQDYGVPWTPGETRQVWDIEARIEFAAQGKEAKVS
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEE
LAAPLTQEGYTLINETASSPGYGISYLNTESGRRIEWSIRQASGPQTIYYKAQFLVDPQA
EECCCCCCCCCHHHHCCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEEEEEECCCC
KAVQIPPTQPITKPAFDGPEESAAIALIDSASQRSADHVTFARELIKGLNDSESQNASLL
CEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
LNKMSKVDATQKLLSYALVPNKVVGVIQLEDGRRRQSIQHMNEVWNGSAWILFNPETGTQ
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
PTHPNLLVWDESNVSLLDVVGGQNSQVMFSMISQKVSPQQATDSKVEADGLLNLSIHSLP
CCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCC
LEEQAMFKTIMLIPIGALIVVFLRVIVGLKTSGTFMPVLIAVAFVQTQLTTGIVGFLLIV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GTGLIIRSYLSKLNLLLVARISAVIITVILIISVFTVVAFKVGLTEGLTITFFPMIILSW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
TIERMSILWEEEGAKEVLLQGGGSLFTAILIYLAMTNTYVQHLTFNFIGLQLVVLAAILL
HHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGTYTGYRISELRRFKPLVEEK
HHCCCCCHHHHHHHHCHHHCCC
>Mature Secondary Structure 
TSKIPFYISVFLLFATGITLSVLRHQDYGVPWTPGETRQVWDIEARIEFAAQGKEAKVS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEE
LAAPLTQEGYTLINETASSPGYGISYLNTESGRRIEWSIRQASGPQTIYYKAQFLVDPQA
EECCCCCCCCCHHHHCCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEEEEEECCCC
KAVQIPPTQPITKPAFDGPEESAAIALIDSASQRSADHVTFARELIKGLNDSESQNASLL
CEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
LNKMSKVDATQKLLSYALVPNKVVGVIQLEDGRRRQSIQHMNEVWNGSAWILFNPETGTQ
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
PTHPNLLVWDESNVSLLDVVGGQNSQVMFSMISQKVSPQQATDSKVEADGLLNLSIHSLP
CCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCC
LEEQAMFKTIMLIPIGALIVVFLRVIVGLKTSGTFMPVLIAVAFVQTQLTTGIVGFLLIV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GTGLIIRSYLSKLNLLLVARISAVIITVILIISVFTVVAFKVGLTEGLTITFFPMIILSW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
TIERMSILWEEEGAKEVLLQGGGSLFTAILIYLAMTNTYVQHLTFNFIGLQLVVLAAILL
HHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGTYTGYRISELRRFKPLVEEK
HHCCCCCHHHHHHHHCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA