| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is rnfC [H]
Identifier: 227081189
GI number: 227081189
Start: 1040842
End: 1043247
Strand: Reverse
Name: rnfC [H]
Synonym: VCM66_0971
Alternate gene names: 227081189
Gene position: 1043247-1040842 (Counterclockwise)
Preceding gene: 227081190
Following gene: 227081188
Centisome position: 36.07
GC content: 52.91
Gene sequence:
>2406_bases GTGGCAACTCAATGCCATCCCTGTGGTCAATGTGACCGATTCTGCGCCTGCTGCGCAGAAAAGTGCGAATTAAGGATGGG TATGTTGTCATTAATCGAACAAATCAAATCAGGTAAGCTTTGGGACTTCCCCGGCGGCATTCATCCGTTTGAAAATAAAC ACCAATCCAACCGTCAGCCGATTATCAATGCGAGCATTCCGAATGAGCTGGTACTGCCACTCAAGCAGCACATTGGTAAG GCCGGCGATCTACTGGTGAAAGTGGGCGATCGCGTTTTAAAAGGCCAGCCGCTGACGCAATATACGTCGACCTTCATGTT GCCGATTCATGCACCAACTTCAGGCGTTATTAGCGCTATTGAGCCACGTACCGTCGCTCACCCTTCCGGTTTGAGTGAGC TGTGTATCGTACTAACGCCAGACCAACAAGAAGAGTGGTTTGAGTTGCAGCCGCAGCCGGATTTTCAGCAGTTGACCCCT GAAACACTGTTGGAGCTGATCCGTCAGGCCGGTATCTCAGGTATGGGTGGCGCAGGTTTCCCAACTGCGAAGAAACTGCA ATCTGGGCTTTCGCGCACCGAAATCTTGATCATTAACGCCGCCGAGTGTGAGCCTTATATCACCGCAGATGATGTGTTAA TGCGTCAATATGCCCATGAAATTATTCAGGGAATCGAGATTGTTGAGCACATTCTAAAGCCTAAACTCACCATCATCGGG ATTGAAGATAACAAACCGGAAGCCGTTGCAGCGCTGCAGCAAGCCGCGCAAGACAAACCGATGGTGATCCGCGTTATCCC AACCAAATACCCGTCTGGTGGTGAGAAACAACTCATCAAAATCCTGACTAACTTGGAAGTTCCGAAAGGTGGTATTCCTG CCGATATCGGTTTAATGGTGCAAAATGTCGGCTCATTGCAGGCGATTGCGCGCGCGATTGTACATGGTGAACCTCTGATC CGCCGTGTAGTGACACTCACCGGCGATTGTTTCCGTAAACCACGTAACGTTTGGGCATTGCTCGGCACGCCTGTCCAAGC GCTGCTCAATGAGTTTGGCTACAAAGCCGATAAAAAGCTGCCGCGTCTCATCATGGGCGGCCCGATGATGGGCTTCACTC TACCCCATGCGCAAGTGCCGATCACTAAAACCGCTAACTGTATTCTTGCGCCTACACGCAATGAGTTAACCAGTAGTGAT AATGAGATGGCGTGTATCCGCTGCGGTCAATGCGCCGAAGCCTGTCCGGTATCGCTATTACCACAGCAGTTACAGTGGCA CGCGAAAGCCGAAGAATTTGATAAGTGCGAAGAGCTCGATCTAAAAGACTGTATTGAATGCGGCGCTTGTGCTTATGTCT GCCCGAGTGAAATTCCGTTGGTGCAGTACTATCGCCAAGCCAAAGCAGAAATTCGTACCCGCAGCTTAGAAGCGGAAGCC GCTGAACGAGCAAAAGCACGCTTCGAAGAGAAAAAAGCGCGCATGGAGCGGGATAAAGCGGAGCGTGAAAATCGCTTCAA GCAAGCGGCGGAAGATCGCCGCAAAGAGATGCAGCAGCAAGGTGGCTCCGATGCGATTGCGGCGGCCATTGAACGGGTTA AAGCCCAAAAAGCTCAGCTCGAGCCAACCGATAACAGCGTAAAACCGGCTATTGCGGCTGCGATTGCACGCGCTAAAGCC AAACAGGCAGAAGCAGCGCAAAGTGGTGCCAGTGAGCCTGATAATAGTGAAATGGCTAAACTACGTGAAGAGCGTAAACG CCAAGCTCGGGAACGCAAGGCACAAAAAGGTGAAGTGACTGAAGCATCAACCAGTGATGGTGCGGACGATAAGAAATCGG CTGTCGCTGCAGCGATTGCTCGCGCCAAAGCGCGTAAAGCGGAGCAGCAGGAAACCGAAAGCGCAGCTCAGCCAGCACAA GCCACACCAAGCAGTGACGATGCTGATCCGAAAAAAGCTGCGGTCGCCGCCGCCATTGCTCGTGCTAAAGCGCGTAAAGC AGAGCAGCAGGAAACCGAAAGCACAGCTCAGCCAGCACAAGCCACGCCAAGCAGTGACGACGCTGACCCGAAAAAAGCTG CGGTCGCTGCGGCCATTGCTCGCGCTAAAGCGCGTAAAGCAGAGAAGCAGGAAACCGAAAGCGCAGCTCAGCCAACTCAA GCTACGCCAAGCAGTGACGATGCAGACCCGAAAAAAGCTGCGGTGGCCGCCGCGATTGCTCGCGCTAAAGCACGTAAAGC GGAGCAGCAGGAAACCGAAAGCGCAGCTCAGCCAACTCAAGCTACGCCAAGCAGTGACGATGCAGACCCGAAAAAAGCTG CGGTGGCCGCCGCGATTGCTCGCGCCAAAGCACGGAAAGCCGCCCAACAATCATCATCTAATTTAAACGCTGAGGAGAAA GACTAG
Upstream 100 bases:
>100_bases TGATCAAAAATGAGTGCACGGGTTGTGACCTGTGCGTCGCGCCTTGCCCGACCGACTGTATTGAAATGATCCCGGTACAA ACCACGCCAGAGAGCTGGAA
Downstream 100 bases:
>100_bases TGGCCTTCTTTATTGCTAGCTCCCCACATTTACGCAGTAAGCGCAGCACGGCTGACGTTATGCGTTGGGTATTAGCCTGC GCACTGCCCGGCCTGATCGC
Product: electron transport complex protein RnfC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 801; Mature: 800
Protein sequence:
>801_residues MATQCHPCGQCDRFCACCAEKCELRMGMLSLIEQIKSGKLWDFPGGIHPFENKHQSNRQPIINASIPNELVLPLKQHIGK AGDLLVKVGDRVLKGQPLTQYTSTFMLPIHAPTSGVISAIEPRTVAHPSGLSELCIVLTPDQQEEWFELQPQPDFQQLTP ETLLELIRQAGISGMGGAGFPTAKKLQSGLSRTEILIINAAECEPYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIG IEDNKPEAVAALQQAAQDKPMVIRVIPTKYPSGGEKQLIKILTNLEVPKGGIPADIGLMVQNVGSLQAIARAIVHGEPLI RRVVTLTGDCFRKPRNVWALLGTPVQALLNEFGYKADKKLPRLIMGGPMMGFTLPHAQVPITKTANCILAPTRNELTSSD NEMACIRCGQCAEACPVSLLPQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCPSEIPLVQYYRQAKAEIRTRSLEAEA AERAKARFEEKKARMERDKAERENRFKQAAEDRRKEMQQQGGSDAIAAAIERVKAQKAQLEPTDNSVKPAIAAAIARAKA KQAEAAQSGASEPDNSEMAKLREERKRQARERKAQKGEVTEASTSDGADDKKSAVAAAIARAKARKAEQQETESAAQPAQ ATPSSDDADPKKAAVAAAIARAKARKAEQQETESTAQPAQATPSSDDADPKKAAVAAAIARAKARKAEKQETESAAQPTQ ATPSSDDADPKKAAVAAAIARAKARKAEQQETESAAQPTQATPSSDDADPKKAAVAAAIARAKARKAAQQSSSNLNAEEK D
Sequences:
>Translated_801_residues MATQCHPCGQCDRFCACCAEKCELRMGMLSLIEQIKSGKLWDFPGGIHPFENKHQSNRQPIINASIPNELVLPLKQHIGK AGDLLVKVGDRVLKGQPLTQYTSTFMLPIHAPTSGVISAIEPRTVAHPSGLSELCIVLTPDQQEEWFELQPQPDFQQLTP ETLLELIRQAGISGMGGAGFPTAKKLQSGLSRTEILIINAAECEPYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIG IEDNKPEAVAALQQAAQDKPMVIRVIPTKYPSGGEKQLIKILTNLEVPKGGIPADIGLMVQNVGSLQAIARAIVHGEPLI RRVVTLTGDCFRKPRNVWALLGTPVQALLNEFGYKADKKLPRLIMGGPMMGFTLPHAQVPITKTANCILAPTRNELTSSD NEMACIRCGQCAEACPVSLLPQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCPSEIPLVQYYRQAKAEIRTRSLEAEA AERAKARFEEKKARMERDKAERENRFKQAAEDRRKEMQQQGGSDAIAAAIERVKAQKAQLEPTDNSVKPAIAAAIARAKA KQAEAAQSGASEPDNSEMAKLREERKRQARERKAQKGEVTEASTSDGADDKKSAVAAAIARAKARKAEQQETESAAQPAQ ATPSSDDADPKKAAVAAAIARAKARKAEQQETESTAQPAQATPSSDDADPKKAAVAAAIARAKARKAEKQETESAAQPTQ ATPSSDDADPKKAAVAAAIARAKARKAEQQETESAAQPTQATPSSDDADPKKAAVAAAIARAKARKAAQQSSSNLNAEEK D >Mature_800_residues ATQCHPCGQCDRFCACCAEKCELRMGMLSLIEQIKSGKLWDFPGGIHPFENKHQSNRQPIINASIPNELVLPLKQHIGKA GDLLVKVGDRVLKGQPLTQYTSTFMLPIHAPTSGVISAIEPRTVAHPSGLSELCIVLTPDQQEEWFELQPQPDFQQLTPE TLLELIRQAGISGMGGAGFPTAKKLQSGLSRTEILIINAAECEPYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIGI EDNKPEAVAALQQAAQDKPMVIRVIPTKYPSGGEKQLIKILTNLEVPKGGIPADIGLMVQNVGSLQAIARAIVHGEPLIR RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGYKADKKLPRLIMGGPMMGFTLPHAQVPITKTANCILAPTRNELTSSDN EMACIRCGQCAEACPVSLLPQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCPSEIPLVQYYRQAKAEIRTRSLEAEAA ERAKARFEEKKARMERDKAERENRFKQAAEDRRKEMQQQGGSDAIAAAIERVKAQKAQLEPTDNSVKPAIAAAIARAKAK QAEAAQSGASEPDNSEMAKLREERKRQARERKAQKGEVTEASTSDGADDKKSAVAAAIARAKARKAEQQETESAAQPAQA TPSSDDADPKKAAVAAAIARAKARKAEQQETESTAQPAQATPSSDDADPKKAAVAAAIARAKARKAEKQETESAAQPTQA TPSSDDADPKKAAVAAAIARAKARKAEQQETESAAQPTQATPSSDDADPKKAAVAAAIARAKARKAAQQSSSNLNAEEKD
Specific function: May be part of a membrane complex involved in electron transport [H]
COG id: COG4656
COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Escherichia coli, GI1787916, Length=781, Percent_Identity=50.3201024327785, Blast_Score=565, Evalue=1e-162,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR010208 - InterPro: IPR012285 - InterPro: IPR009051 - InterPro: IPR011538 - InterPro: IPR019554 [H]
Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]
EC number: NA
Molecular weight: Translated: 86478; Mature: 86347
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATQCHPCGQCDRFCACCAEKCELRMGMLSLIEQIKSGKLWDFPGGIHPFENKHQSNRQP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC IINASIPNELVLPLKQHIGKAGDLLVKVGDRVLKGQPLTQYTSTFMLPIHAPTSGVISAI EEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCEEEEEEECCCHHHHHHC EPRTVAHPSGLSELCIVLTPDQQEEWFELQPQPDFQQLTPETLLELIRQAGISGMGGAGF CCCCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCC PTAKKLQSGLSRTEILIINAAECEPYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIG CHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE IEDNKPEAVAALQQAAQDKPMVIRVIPTKYPSGGEKQLIKILTNLEVPKGGIPADIGLMV ECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH QNVGSLQAIARAIVHGEPLIRRVVTLTGDCFRKPRNVWALLGTPVQALLNEFGYKADKKL HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCHHHCC PRLIMGGPMMGFTLPHAQVPITKTANCILAPTRNELTSSDNEMACIRCGQCAEACPVSLL CHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCEEEEECCCHHHHCCHHHC PQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCPSEIPLVQYYRQAKAEIRTRSLEAEA HHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH AERAKARFEEKKARMERDKAERENRFKQAAEDRRKEMQQQGGSDAIAAAIERVKAQKAQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC EPTDNSVKPAIAAAIARAKAKQAEAAQSGASEPDNSEMAKLREERKRQARERKAQKGEVT CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC EASTSDGADDKKSAVAAAIARAKARKAEQQETESAAQPAQATPSSDDADPKKAAVAAAIA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH RAKARKAEQQETESTAQPAQATPSSDDADPKKAAVAAAIARAKARKAEKQETESAAQPTQ HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC ATPSSDDADPKKAAVAAAIARAKARKAEQQETESAAQPTQATPSSDDADPKKAAVAAAIA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH RAKARKAAQQSSSNLNAEEKD HHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure ATQCHPCGQCDRFCACCAEKCELRMGMLSLIEQIKSGKLWDFPGGIHPFENKHQSNRQP CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC IINASIPNELVLPLKQHIGKAGDLLVKVGDRVLKGQPLTQYTSTFMLPIHAPTSGVISAI EEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCEEEEEEECCCHHHHHHC EPRTVAHPSGLSELCIVLTPDQQEEWFELQPQPDFQQLTPETLLELIRQAGISGMGGAGF CCCCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCC PTAKKLQSGLSRTEILIINAAECEPYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIG CHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE IEDNKPEAVAALQQAAQDKPMVIRVIPTKYPSGGEKQLIKILTNLEVPKGGIPADIGLMV ECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH QNVGSLQAIARAIVHGEPLIRRVVTLTGDCFRKPRNVWALLGTPVQALLNEFGYKADKKL HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCHHHCC PRLIMGGPMMGFTLPHAQVPITKTANCILAPTRNELTSSDNEMACIRCGQCAEACPVSLL CHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCEEEEECCCHHHHCCHHHC PQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCPSEIPLVQYYRQAKAEIRTRSLEAEA HHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH AERAKARFEEKKARMERDKAERENRFKQAAEDRRKEMQQQGGSDAIAAAIERVKAQKAQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC EPTDNSVKPAIAAAIARAKAKQAEAAQSGASEPDNSEMAKLREERKRQARERKAQKGEVT CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC EASTSDGADDKKSAVAAAIARAKARKAEQQETESAAQPAQATPSSDDADPKKAAVAAAIA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH RAKARKAEQQETESTAQPAQATPSSDDADPKKAAVAAAIARAKARKAEKQETESAAQPTQ HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC ATPSSDDADPKKAAVAAAIARAKARKAEQQETESAAQPTQATPSSDDADPKKAAVAAAIA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH RAKARKAAQQSSSNLNAEEKD HHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: 4Fe-4S clusters [C]
Metal ions: Iron-Sulfur [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]