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The map label for this gene is rnfD [H]

Identifier: 227081188

GI number: 227081188

Start: 1039796

End: 1040842

Strand: Reverse

Name: rnfD [H]

Synonym: VCM66_0970

Alternate gene names: 227081188

Gene position: 1040842-1039796 (Counterclockwise)

Preceding gene: 227081189

Following gene: 227081187

Centisome position: 35.98

GC content: 53.39

Gene sequence:

>1047_bases
GTGGCCTTCTTTATTGCTAGCTCCCCACATTTACGCAGTAAGCGCAGCACGGCTGACGTTATGCGTTGGGTATTAGCCTG
CGCACTGCCCGGCCTGATCGCTCAGACCTACTTTTTTGGCTACGGCACACTGATCCAGTTACTGCTGGCCATCTCGGTCG
CGGTGGCACTCGAAGCGGGCATTATGCTGCTGCGTAAACGATCACCAATCTCAGCACTGCGCGATTACAGCGCGGTGGTT
ACCGCATGGTTACTCGCGGTCGCTATCCCGCCCCTCTCACCATGGTGGGTCGTCGTGATCGGTCTGATTTTTGCGATCGT
GATTGCCAAACATTTGTATGGTGGACTTGGGCAAAACCCTTTTAACCCAGCGATGATCGCCTACGTAGTGTTGTTGATCT
CCTTTCCGGTTCAGATGACCAGTTGGATGGCGCCCATTAAGTTAACCGCCGAACCAAGCTCACTGGTAGACTCGTTCTCA
CTGATCTTCGGCGGTTTTGACAGTGATGGTCTATCGCTACAGCAAATCCGTACGGGCATCGATGGCATTACCATGGCAAC
CCCGCTCGATGCGTTCAAGACCTCGCTCAAAGCAGGACATACCATGAGTGAAACCTTGACCCAGCCTCAGTTTAGTGGCT
TTGCGGGTATCGGTTGGGAATGGGTCAATATTGCCTATCTACTCGGTGGCCTGATTCTGCTGAAACTGCGTATTATCCGT
TGGCACATTCCAATGGCAATGCTGGCAGGTTTGGTTTTCACAGCGTTACTGGCACAACTTTTTGCACCGGGAACAACCGC
GTCCCCCATGATCCATCTACTCTCGGGCGCAACCATGCTGGGCGCATTTTTTATCGCGACCGATCCGGTCAGTGCCAGCA
CGACGGATAAAGGCCGCTTGATTTACGGTTTCTTCATCGGTGCCATGGTGTTTCTGATCCGTAGTTGGGGCGGCTTCCCT
GATGGTGTCGCCTTTGCCGTACTGCTCGCCAACATGTGCGTACCGCTGATTGACTACTACACCAAACCGAGAACTTACGG
ACACTAA

Upstream 100 bases:

>100_bases
ACCCGAAAAAAGCTGCGGTGGCCGCCGCGATTGCTCGCGCCAAAGCACGGAAAGCCGCCCAACAATCATCATCTAATTTA
AACGCTGAGGAGAAAGACTA

Downstream 100 bases:

>100_bases
GAGCGCGACTTATGCTGACAGCAATTCGAAAAAATGGCCTGATTCTCGCCGTCTTTGCCTGTGTTTCAACGGGTTTGGTG
GCGCTGACTTACGCCCTCAC

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MAFFIASSPHLRSKRSTADVMRWVLACALPGLIAQTYFFGYGTLIQLLLAISVAVALEAGIMLLRKRSPISALRDYSAVV
TAWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNPFNPAMIAYVVLLISFPVQMTSWMAPIKLTAEPSSLVDSFS
LIFGGFDSDGLSLQQIRTGIDGITMATPLDAFKTSLKAGHTMSETLTQPQFSGFAGIGWEWVNIAYLLGGLILLKLRIIR
WHIPMAMLAGLVFTALLAQLFAPGTTASPMIHLLSGATMLGAFFIATDPVSASTTDKGRLIYGFFIGAMVFLIRSWGGFP
DGVAFAVLLANMCVPLIDYYTKPRTYGH

Sequences:

>Translated_348_residues
MAFFIASSPHLRSKRSTADVMRWVLACALPGLIAQTYFFGYGTLIQLLLAISVAVALEAGIMLLRKRSPISALRDYSAVV
TAWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNPFNPAMIAYVVLLISFPVQMTSWMAPIKLTAEPSSLVDSFS
LIFGGFDSDGLSLQQIRTGIDGITMATPLDAFKTSLKAGHTMSETLTQPQFSGFAGIGWEWVNIAYLLGGLILLKLRIIR
WHIPMAMLAGLVFTALLAQLFAPGTTASPMIHLLSGATMLGAFFIATDPVSASTTDKGRLIYGFFIGAMVFLIRSWGGFP
DGVAFAVLLANMCVPLIDYYTKPRTYGH
>Mature_347_residues
AFFIASSPHLRSKRSTADVMRWVLACALPGLIAQTYFFGYGTLIQLLLAISVAVALEAGIMLLRKRSPISALRDYSAVVT
AWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNPFNPAMIAYVVLLISFPVQMTSWMAPIKLTAEPSSLVDSFSL
IFGGFDSDGLSLQQIRTGIDGITMATPLDAFKTSLKAGHTMSETLTQPQFSGFAGIGWEWVNIAYLLGGLILLKLRIIRW
HIPMAMLAGLVFTALLAQLFAPGTTASPMIHLLSGATMLGAFFIATDPVSASTTDKGRLIYGFFIGAMVFLIRSWGGFPD
GVAFAVLLANMCVPLIDYYTKPRTYGH

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=349, Percent_Identity=58.7392550143267, Blast_Score=416, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 37642; Mature: 37511

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFFIASSPHLRSKRSTADVMRWVLACALPGLIAQTYFFGYGTLIQLLLAISVAVALEAG
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMLLRKRSPISALRDYSAVVTAWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNP
HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMIAYVVLLISFPVQMTSWMAPIKLTAEPSSLVDSFSLIFGGFDSDGLSLQQIRTGI
CCHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHCC
DGITMATPLDAFKTSLKAGHTMSETLTQPQFSGFAGIGWEWVNIAYLLGGLILLKLRIIR
CCCCHHCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
WHIPMAMLAGLVFTALLAQLFAPGTTASPMIHLLSGATMLGAFFIATDPVSASTTDKGRL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
IYGFFIGAMVFLIRSWGGFPDGVAFAVLLANMCVPLIDYYTKPRTYGH
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AFFIASSPHLRSKRSTADVMRWVLACALPGLIAQTYFFGYGTLIQLLLAISVAVALEAG
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMLLRKRSPISALRDYSAVVTAWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNP
HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMIAYVVLLISFPVQMTSWMAPIKLTAEPSSLVDSFSLIFGGFDSDGLSLQQIRTGI
CCHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHCC
DGITMATPLDAFKTSLKAGHTMSETLTQPQFSGFAGIGWEWVNIAYLLGGLILLKLRIIR
CCCCHHCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
WHIPMAMLAGLVFTALLAQLFAPGTTASPMIHLLSGATMLGAFFIATDPVSASTTDKGRL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
IYGFFIGAMVFLIRSWGGFPDGVAFAVLLANMCVPLIDYYTKPRTYGH
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA