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The map label for this gene is rnfB

Identifier: 227081190

GI number: 227081190

Start: 1043175

End: 1043762

Strand: Reverse

Name: rnfB

Synonym: VCM66_0972

Alternate gene names: 227081190

Gene position: 1043762-1043175 (Counterclockwise)

Preceding gene: 227081191

Following gene: 227081189

Centisome position: 36.08

GC content: 52.21

Gene sequence:

>588_bases
ATGAGTACCATAGTCATCGCTGTTATTGCGCTGGCGGCATTGGCCGCCGTGTTTGGAGCCATACTCGGCTTTGCTTCGAT
TCGCTTTAAGGTAGAAGCCGACCCTATCGTGGACCAAATAGATGCTATCTTGCCACAAACCCAATGTGGCCAATGCGGCT
ACCCCGGATGTCGCCCTTACGCCGAAGCCATTGCTAATGGTGATGCGATTAACAAATGCCCTCCGGGTGGCCAAGCGACC
ATTGAAAAACTTGCAGATTTGATGGGTGTCGAAGTGCAAGACTCCGCCCACGATCTGGACAACAAAGTCAAAATGGTCGC
CTTTATTCATGAAGACATGTGTATCGGCTGCACCAAGTGTATTCAGGCTTGCCCGGTCGATGCGATTGTGGGCGGTAACA
AAGCCGTACACACAGTGATCAAAAATGAGTGCACGGGTTGTGACCTGTGCGTCGCGCCTTGCCCGACCGACTGTATTGAA
ATGATCCCGGTACAAACCACGCCAGAGAGCTGGAAGTGGCAACTCAATGCCATCCCTGTGGTCAATGTGACCGATTCTGC
GCCTGCTGCGCAGAAAAGTGCGAATTAA

Upstream 100 bases:

>100_bases
CCGATGTCCCCGCTCCCTTTAAGGGCGCATCCATTGCGATGATCACCGCAGGTTTAATGTCTTTGGCCTTTATGGGCTTT
ACCGGATTGGTGAAACTGTA

Downstream 100 bases:

>100_bases
GGATGGGTATGTTGTCATTAATCGAACAAATCAAATCAGGTAAGCTTTGGGACTTCCCCGGCGGCATTCATCCGTTTGAA
AATAAACACCAATCCAACCG

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MSTIVIAVIALAALAAVFGAILGFASIRFKVEADPIVDQIDAILPQTQCGQCGYPGCRPYAEAIANGDAINKCPPGGQAT
IEKLADLMGVEVQDSAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIE
MIPVQTTPESWKWQLNAIPVVNVTDSAPAAQKSAN

Sequences:

>Translated_195_residues
MSTIVIAVIALAALAAVFGAILGFASIRFKVEADPIVDQIDAILPQTQCGQCGYPGCRPYAEAIANGDAINKCPPGGQAT
IEKLADLMGVEVQDSAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIE
MIPVQTTPESWKWQLNAIPVVNVTDSAPAAQKSAN
>Mature_194_residues
STIVIAVIALAALAAVFGAILGFASIRFKVEADPIVDQIDAILPQTQCGQCGYPGCRPYAEAIANGDAINKCPPGGQATI
EKLADLMGVEVQDSAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEM
IPVQTTPESWKWQLNAIPVVNVTDSAPAAQKSAN

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787915, Length=183, Percent_Identity=62.2950819672131, Blast_Score=231, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFB_VIBC3 (A5F2R3)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F2R3
- SMR:   A5F2R3
- STRING:   A5F2R3
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0537
- eggNOG:   COG2878
- HOGENOM:   HBG549899
- OMA:   KFKVEGD
- ProtClustDB:   PRK05113
- BioCyc:   VCHO345073:VC0395_A0537-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00463
- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202
- PIRSF:   PIRSF005784
- TIGRFAMs:   TIGR01944

Pfam domain/function: PF00037 Fer4; PF04060 FeS

EC number: NA

Molecular weight: Translated: 20441; Mature: 20310

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
9.2 %Cys+Met (Translated Protein)
6.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIVIAVIALAALAAVFGAILGFASIRFKVEADPIVDQIDAILPQTQCGQCGYPGCRPY
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHH
AEAIANGDAINKCPPGGQATIEKLADLMGVEVQDSAHDLDNKVKMVAFIHEDMCIGCTKC
HHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHEEHHHHHCCHHHHHHHH
IQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPVQTTPESWKWQLNAIPV
HHHCCCHHEECCCHHHHHHHHCCCCCCCEEECCCCHHHHHHCCCCCCCCCCEEEEECEEE
VNVTDSAPAAQKSAN
EEECCCCCCCCCCCC
>Mature Secondary Structure 
STIVIAVIALAALAAVFGAILGFASIRFKVEADPIVDQIDAILPQTQCGQCGYPGCRPY
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHH
AEAIANGDAINKCPPGGQATIEKLADLMGVEVQDSAHDLDNKVKMVAFIHEDMCIGCTKC
HHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHEEHHHHHCCHHHHHHHH
IQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPVQTTPESWKWQLNAIPV
HHHCCCHHEECCCHHHHHHHHCCCCCCCEEECCCCHHHHHHCCCCCCCCCCEEEEECEEE
VNVTDSAPAAQKSAN
EEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA