Click here to switch to the map view.

The map label for this gene is oadB-2

Identifier: 227080971

GI number: 227080971

Start: 805507

End: 806808

Strand: Reverse

Name: oadB-2

Synonym: VCM66_0750

Alternate gene names: 227080971

Gene position: 806808-805507 (Counterclockwise)

Preceding gene: 227080972

Following gene: 227080970

Centisome position: 27.89

GC content: 52.53

Gene sequence:

>1302_bases
ATGGAAAATATTTTAGCCATGGTGCGTGATTTTGGCCTGTTCCACCTTCAGTGGGGACAGGGCATCATGATCCTTGTTGG
GTTAGTGCTGCTCTATCTTGCCATCGTCAAACGTTTCGAGCCTTTGCTGCTGGTACCGATTGGTTTTGGTGGCATTTTAT
CTAACCTGCCCGATGCCGGGCTTGCCATGTCAGCCATCGAAAATGCCGTGTATGCGGCCAAACCGGAAGTGATGACGGCG
TTTTCAGAAGTGCTGCAACTCAGCTCCTACATGCCTGCAGACATCAAGCAAGCCTTGAGCAGCGCAACGCCACTGCAGAT
GACCACCTTGCACCTGCTCGCTGAGCAGTACCAATACAGTGATGGCATGCTCTATCTGTTTTACAGCATTGCCATTGCCT
CTGGCGCTGGCCCATTAATCATCTTTATGGGCGTAGGCGCGATGACCGATTTTGGTCCTCTGCTCGCCAACCCCAAAACG
CTACTGCTCGGTGCGGCAGCTCAGTTTGGTATTTTCACCACCGTACTGGGCGCATTGGCATTAAGCAGTTTAGGGGTGAT
GGATTTTAGCGTGGCGCAAGCAGCAGCGATTGGCATCATAGGTGGCGCTGATGGCCCAACCGCCATTTACGTATCGAGCA
TGCTCGCGCCGGAATTGTTGGGTGCCATTGCGGTGGCGGCTTACTCCTACATGGCGTTAGTCCCTATGATTCAGCCGCCG
ATCATGCGCGCGTTGACCACGCAAGAAGAACGCAAAATTCAGATGCAGCAACTTCGTCAGGTGCACAAGCTGGAAAAAAT
CGGCTTCCCGCTCCTGCTACTGATTTTGATCGCACTGCTGCTGCCTTCGGCAACGCCGCTGCTGGGTATGTTCTGCTTTG
GTAACTTGATGCGTGAATGTGGCGTGGTGGAACGTTTATCTGACACTGCACAAAACGCCCTCATCAACATAGTGACCATT
TTCCTTGGCTTGTCAGTGGGTTCCAAACTGATGGCGGATAAGTTCCTGCAACCCCAAACCATCGGTATTTTGGTGCTAGG
CATTGTTGCTTTCTGTGTTGGTACGGCGGCTGGGGTGTTAATGGCGAAACTGATGAACCGCTTTTCCACCACCAAACTCA
ATCCGTTGATTGGTTCAGCAGGCGTTTCCGCTGTTCCCATGGCCGCACGGGTATCGAATAAGGTCGGGTTAGAAGCCAAC
GCACAGAACTTTTTGCTGATGCATGCAATGGGGCCTAACGTCGCAGGAGTGATCGGCTCTGCGGTAGCTGCCGGGGTAAT
GATCAAATATGTGATGGGCTAA

Upstream 100 bases:

>100_bases
GCCACGTGCCGGAGTGATCAGTGCCATTGAAGTCAATGAAGGCGATGCCGTACAAGTCGGTGATGCTTTGTTGGTATTGG
CGTAATCAGAGGCGGAAAGT

Downstream 100 bases:

>100_bases
ACATAAATGGTTGGGGTTTCTTAGACCCCAATCAATAAGCCCCGTTAATAGCAAGGATAGACTCGCCGGCATGAAAATAT
CACTAGCGCAATTTTTACAT

Product: oxaloacetate decarboxylase, beta subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MENILAMVRDFGLFHLQWGQGIMILVGLVLLYLAIVKRFEPLLLVPIGFGGILSNLPDAGLAMSAIENAVYAAKPEVMTA
FSEVLQLSSYMPADIKQALSSATPLQMTTLHLLAEQYQYSDGMLYLFYSIAIASGAGPLIIFMGVGAMTDFGPLLANPKT
LLLGAAAQFGIFTTVLGALALSSLGVMDFSVAQAAAIGIIGGADGPTAIYVSSMLAPELLGAIAVAAYSYMALVPMIQPP
IMRALTTQEERKIQMQQLRQVHKLEKIGFPLLLLILIALLLPSATPLLGMFCFGNLMRECGVVERLSDTAQNALINIVTI
FLGLSVGSKLMADKFLQPQTIGILVLGIVAFCVGTAAGVLMAKLMNRFSTTKLNPLIGSAGVSAVPMAARVSNKVGLEAN
AQNFLLMHAMGPNVAGVIGSAVAAGVMIKYVMG

Sequences:

>Translated_433_residues
MENILAMVRDFGLFHLQWGQGIMILVGLVLLYLAIVKRFEPLLLVPIGFGGILSNLPDAGLAMSAIENAVYAAKPEVMTA
FSEVLQLSSYMPADIKQALSSATPLQMTTLHLLAEQYQYSDGMLYLFYSIAIASGAGPLIIFMGVGAMTDFGPLLANPKT
LLLGAAAQFGIFTTVLGALALSSLGVMDFSVAQAAAIGIIGGADGPTAIYVSSMLAPELLGAIAVAAYSYMALVPMIQPP
IMRALTTQEERKIQMQQLRQVHKLEKIGFPLLLLILIALLLPSATPLLGMFCFGNLMRECGVVERLSDTAQNALINIVTI
FLGLSVGSKLMADKFLQPQTIGILVLGIVAFCVGTAAGVLMAKLMNRFSTTKLNPLIGSAGVSAVPMAARVSNKVGLEAN
AQNFLLMHAMGPNVAGVIGSAVAAGVMIKYVMG
>Mature_433_residues
MENILAMVRDFGLFHLQWGQGIMILVGLVLLYLAIVKRFEPLLLVPIGFGGILSNLPDAGLAMSAIENAVYAAKPEVMTA
FSEVLQLSSYMPADIKQALSSATPLQMTTLHLLAEQYQYSDGMLYLFYSIAIASGAGPLIIFMGVGAMTDFGPLLANPKT
LLLGAAAQFGIFTTVLGALALSSLGVMDFSVAQAAAIGIIGGADGPTAIYVSSMLAPELLGAIAVAAYSYMALVPMIQPP
IMRALTTQEERKIQMQQLRQVHKLEKIGFPLLLLILIALLLPSATPLLGMFCFGNLMRECGVVERLSDTAQNALINIVTI
FLGLSVGSKLMADKFLQPQTIGILVLGIVAFCVGTAAGVLMAKLMNRFSTTKLNPLIGSAGVSAVPMAARVSNKVGLEAN
AQNFLLMHAMGPNVAGVIGSAVAAGVMIKYVMG

Specific function: Lyase and sodium transporter

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OADB_VIBCH (Q9KTU5)

Other databases:

- EMBL:   AE003852
- PIR:   D82280
- RefSeq:   NP_230441.1
- GeneID:   2615335
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC0792
- TIGR:   VC_0792
- HOGENOM:   HBG474553
- OMA:   AAPLIIF
- ProtClustDB:   CLSK2517505
- BRENDA:   4.1.1.3
- InterPro:   IPR005661
- PIRSF:   PIRSF015658
- TIGRFAMs:   TIGR01109

Pfam domain/function: PF03977 OAD_beta

EC number: =4.1.1.3

Molecular weight: Translated: 45599; Mature: 45599

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x25e6d344)-; HASH(0x24bbf2b4)-; HASH(0x24c63070)-; HASH(0x24f456f4)-; HASH(0x25b6116c)-; HASH(0x25e9fb38)-; HASH(0x23d58310)-; HASH(0x25dd0340)-; HASH(0x25ea8be8)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENILAMVRDFGLFHLQWGQGIMILVGLVLLYLAIVKRFEPLLLVPIGFGGILSNLPDAG
CHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCH
LAMSAIENAVYAAKPEVMTAFSEVLQLSSYMPADIKQALSSATPLQMTTLHLLAEQYQYS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC
DGMLYLFYSIAIASGAGPLIIFMGVGAMTDFGPLLANPKTLLLGAAAQFGIFTTVLGALA
CCHHHHHHHHHHHCCCCCEEEEECCCCHHHCCHHHCCCCHHEEEHHHHHHHHHHHHHHHH
LSSLGVMDFSVAQAAAIGIIGGADGPTAIYVSSMLAPELLGAIAVAAYSYMALVPMIQPP
HHHCCCHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
IMRALTTQEERKIQMQQLRQVHKLEKIGFPLLLLILIALLLPSATPLLGMFCFGNLMREC
HHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
GVVERLSDTAQNALINIVTIFLGLSVGSKLMADKFLQPQTIGILVLGIVAFCVGTAAGVL
CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
MAKLMNRFSTTKLNPLIGSAGVSAVPMAARVSNKVGLEANAQNFLLMHAMGPNVAGVIGS
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHH
AVAAGVMIKYVMG
HHHHHHHHHHHCH
>Mature Secondary Structure
MENILAMVRDFGLFHLQWGQGIMILVGLVLLYLAIVKRFEPLLLVPIGFGGILSNLPDAG
CHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCH
LAMSAIENAVYAAKPEVMTAFSEVLQLSSYMPADIKQALSSATPLQMTTLHLLAEQYQYS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC
DGMLYLFYSIAIASGAGPLIIFMGVGAMTDFGPLLANPKTLLLGAAAQFGIFTTVLGALA
CCHHHHHHHHHHHCCCCCEEEEECCCCHHHCCHHHCCCCHHEEEHHHHHHHHHHHHHHHH
LSSLGVMDFSVAQAAAIGIIGGADGPTAIYVSSMLAPELLGAIAVAAYSYMALVPMIQPP
HHHCCCHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
IMRALTTQEERKIQMQQLRQVHKLEKIGFPLLLLILIALLLPSATPLLGMFCFGNLMREC
HHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
GVVERLSDTAQNALINIVTIFLGLSVGSKLMADKFLQPQTIGILVLGIVAFCVGTAAGVL
CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
MAKLMNRFSTTKLNPLIGSAGVSAVPMAARVSNKVGLEANAQNFLLMHAMGPNVAGVIGS
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHH
AVAAGVMIKYVMG
HHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301