Click here to switch to the map view.

The map label for this gene is glyQ [H]

Identifier: 227080258

GI number: 227080258

Start: 18950

End: 19942

Strand: Reverse

Name: glyQ [H]

Synonym: VCM66_0021

Alternate gene names: 227080258

Gene position: 19942-18950 (Counterclockwise)

Preceding gene: 227080261

Following gene: 227080257

Centisome position: 0.69

GC content: 49.95

Gene sequence:

>993_bases
TTGTCAGGGAATATCTGGGTATACTTCAGTGTTATTTTTTATCAATTCAGACAGAAGAATCGCGCGAACCTGACTATGCA
AAAATACGACATCAAAACCTTTCAGGGTATGATCCTCGCGCTGCAGGATTATTGGGCCCAACAAGGCTGTACTATTGTGC
AACCTCTCGACATGGAAGTGGGTGCAGGTACTTCTCACCCGATGACTTGCTTACGAGCATTAGGCCCTGAACCTATCGCA
ACCGCGTACGTTCAACCCTCACGCCGCCCAACTGACGGCCGCTACGGTGAAAACCCAAACCGTCTGCAGCACTACTACCA
GTTCCAGGTGATCATCAAACCCTCACCAGACAACATCCAAGAGCTGTACCTAGGTTCACTGCGTGTACTGGGTGTTGACC
CTTGTGTGCATGACATCCGCTTTGTGGAAGACAACTGGGAAAACCCAACCTTAGGTGCTTGGGGTCTTGGCTGGGAAGTG
TGGCTAAACGGCATGGAAGTGACTCAGTTCACTTACTTCCAGCAAGTTGGCGGTCTTGAGTGTAAGCCTGTGACCGGCGA
AATCACTTACGGTATTGAGCGTCTGGCAATGTACATTCAGGGCGTGGATTCGGTTTACGATCTGGTCTGGACCGATGGCC
CACTGGGCAAAGTGACTTACGGCGACATCTTCCACCAAAACGAAGTTGAACAATCCACTTACAACTTTGAACACGCGGAT
GTGGATTTCCTCTTCACTTACTTCGACCAGTGTGAAAAAGAGTGTAAATACCTGCTAGAGCTTGAAAAGCCACTGCCTCT
GCCAGCCTACGAGCGTATTTTGAAAGCGGCACACGCCTTCAACTTGCTCGATGCACGCAAAGCGATCTCAGTGACTGAGC
GTCAGCGCTACATTCTGCGCATTCGCAACCTAACCAAATCGGTCGCCGAAGCTTATTACGCATCCCGTGAAGCTCTGGGC
TTCCCTATGTGTAAGAAGTCAGAACAGAAGTAA

Upstream 100 bases:

>100_bases
ACCCACTTTTCCATGACTCAGAGAGAAATTGGCACAAAAGTCGGGAAAAATGAGCGTAAAAGAAATTATTGTCGATTAAT
TCAGCAAGATTTCCGCTACT

Downstream 100 bases:

>100_bases
GGGGAAGACGTCACATGGCAAAAGAATTTTTAATTGAGCTAGGCACAGAAGAGCTGCCACCAAAGCAACTGCGCACACTG
GCTGAAGCCTTTGCGGCGAA

Product: glycyl-tRNA synthetase subunit alpha

Products: NA

Alternate protein names: Glycine--tRNA ligase alpha subunit; GlyRS [H]

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MSGNIWVYFSVIFYQFRQKNRANLTMQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPIA
TAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLRVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEV
WLNGMEVTQFTYFQQVGGLECKPVTGEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHAD
VDFLFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALG
FPMCKKSEQK

Sequences:

>Translated_330_residues
MSGNIWVYFSVIFYQFRQKNRANLTMQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPIA
TAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLRVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEV
WLNGMEVTQFTYFQQVGGLECKPVTGEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHAD
VDFLFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALG
FPMCKKSEQK
>Mature_329_residues
SGNIWVYFSVIFYQFRQKNRANLTMQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPIAT
AYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLRVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVW
LNGMEVTQFTYFQQVGGLECKPVTGEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHADV
DFLFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGF
PMCKKSEQK

Specific function: Unknown

COG id: COG0752

COG function: function code J; Glycyl-tRNA synthetase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]

Homologues:

Organism=Escherichia coli, GI1789983, Length=303, Percent_Identity=88.7788778877888, Blast_Score=577, Evalue=1e-166,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006194
- InterPro:   IPR002310 [H]

Pfam domain/function: PF02091 tRNA-synt_2e [H]

EC number: =6.1.1.14 [H]

Molecular weight: Translated: 38104; Mature: 37973

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGNIWVYFSVIFYQFRQKNRANLTMQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEV
CCCCEEEHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
GAGTSHPMTCLRALGPEPIATAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQ
CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHEEEEEEEEEEECCCCCHH
ELYLGSLRVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLE
HHHHCCEEEEECCHHHHHHEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCE
CKPVTGEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHAD
EECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHCCCCHHHHHCCCCCCC
VDFLFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILR
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNLTKSVAEAYYASREALGFPMCKKSEQK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SGNIWVYFSVIFYQFRQKNRANLTMQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEV
CCCEEEHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
GAGTSHPMTCLRALGPEPIATAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQ
CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHEEEEEEEEEEECCCCCHH
ELYLGSLRVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLE
HHHHCCEEEEECCHHHHHHEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCE
CKPVTGEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHAD
EECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHCCCCHHHHHCCCCCCC
VDFLFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILR
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNLTKSVAEAYYASREALGFPMCKKSEQK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA