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The map label for this gene is ispD [H]

Identifier: 226950958

GI number: 226950958

Start: 4001003

End: 4001692

Strand: Reverse

Name: ispD [H]

Synonym: CLM_3975

Alternate gene names: 226950958

Gene position: 4001692-4001003 (Counterclockwise)

Preceding gene: 226950959

Following gene: 226950957

Centisome position: 96.3

GC content: 28.26

Gene sequence:

>690_bases
ATGAGTAAAAATTCTGTTATTATAGTTGCTGCCGGAAAAGGTAAAAGAATGAATAGCAGTATAAGTAAGCAGTTTTTGCA
GATAAAAAACAAACCTATTCTTTATTATACTTTAAGCAAATTTTCAACTCATGAATCTATAGATGAAATAGTGCTAGTTA
CCTTAGAAGATAAAATAGAAGTTTGCGGTGATATTATAGATAAATATAATATCAATAAGGTATCTAAAATAGTTCCAGGA
GGTAAGGAAAGACAAGATTCTGTTTATAATGGACTAAAGGCTGTATCAAAGGATTGTGAGGTAGTATTAATTCATGATGC
AGCAAGACCTTTTGTTACTAGTGATATTATAGAGAATGGTATAAGATATACGAATCAATATGGGGCTGCTGCTTGTGGGG
TAATTCCAAAAGATACCATAAAAATAAAAAATGAAAAAGGATTTGCAATAGATACTCCTAACAGAGAGGATCTATTTATA
GTTCAAACTCCCCAGTGTTTTAATTACAATATAATATTAAGTTGTCATGAAAAGTTAAAAAAACATAATAAAAAAGTAAC
AGATGATACTATGGTTTTAGAGAATTACGGTAAATCAGTATATTTATATGAAGGAAGCTATAGTAATATAAAAATAACAA
CTCCTGAAGATTTAATATTAGGAGAACAAATATTAGAAAAGCTAACTTAG

Upstream 100 bases:

>100_bases
AAAAAGCGTATAGGGCAAAATTTAGACGTAGTAGTAACCTCTGTTTTACAAACAGCGGCAGGAAGAATGATTTTTGCTAA
GAGAAAAGAGGAGTCTTAGC

Downstream 100 bases:

>100_bases
CAATAAAACTCGTCCTAATAAGGGGCGAGTTTTGTTTATATATTGAATGTTTAAAATTTCTATCGAGAATATTTTTAAAT
ATAATGAATAGTTTGTTAGG

Product: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Products: NA

Alternate protein names: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT [H]

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MSKNSVIIVAAGKGKRMNSSISKQFLQIKNKPILYYTLSKFSTHESIDEIVLVTLEDKIEVCGDIIDKYNINKVSKIVPG
GKERQDSVYNGLKAVSKDCEVVLIHDAARPFVTSDIIENGIRYTNQYGAAACGVIPKDTIKIKNEKGFAIDTPNREDLFI
VQTPQCFNYNIILSCHEKLKKHNKKVTDDTMVLENYGKSVYLYEGSYSNIKITTPEDLILGEQILEKLT

Sequences:

>Translated_229_residues
MSKNSVIIVAAGKGKRMNSSISKQFLQIKNKPILYYTLSKFSTHESIDEIVLVTLEDKIEVCGDIIDKYNINKVSKIVPG
GKERQDSVYNGLKAVSKDCEVVLIHDAARPFVTSDIIENGIRYTNQYGAAACGVIPKDTIKIKNEKGFAIDTPNREDLFI
VQTPQCFNYNIILSCHEKLKKHNKKVTDDTMVLENYGKSVYLYEGSYSNIKITTPEDLILGEQILEKLT
>Mature_228_residues
SKNSVIIVAAGKGKRMNSSISKQFLQIKNKPILYYTLSKFSTHESIDEIVLVTLEDKIEVCGDIIDKYNINKVSKIVPGG
KERQDSVYNGLKAVSKDCEVVLIHDAARPFVTSDIIENGIRYTNQYGAAACGVIPKDTIKIKNEKGFAIDTPNREDLFIV
QTPQCFNYNIILSCHEKLKKHNKKVTDDTMVLENYGKSVYLYEGSYSNIKITTPEDLILGEQILEKLT

Specific function: Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) [H]

COG id: COG1211

COG function: function code I; 4-diphosphocytidyl-2-methyl-D-erithritol synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ispD family [H]

Homologues:

Organism=Homo sapiens, GI157412259, Length=233, Percent_Identity=27.8969957081545, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI157671913, Length=134, Percent_Identity=33.5820895522388, Blast_Score=80, Evalue=1e-15,
Organism=Escherichia coli, GI1789104, Length=226, Percent_Identity=32.3008849557522, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001228
- InterPro:   IPR018294 [H]

Pfam domain/function: PF01128 IspD [H]

EC number: =2.7.7.60 [H]

Molecular weight: Translated: 25744; Mature: 25613

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS01295 ISPD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNSVIIVAAGKGKRMNSSISKQFLQIKNKPILYYTLSKFSTHESIDEIVLVTLEDKIE
CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEECHHHH
VCGDIIDKYNINKVSKIVPGGKERQDSVYNGLKAVSKDCEVVLIHDAARPFVTSDIIENG
HHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCC
IRYTNQYGAAACGVIPKDTIKIKNEKGFAIDTPNREDLFIVQTPQCFNYNIILSCHEKLK
HHCCCCCCCEECCCCCCCEEEEECCCCCEEECCCCCCEEEEECCCCCCEEEEEEHHHHHH
KHNKKVTDDTMVLENYGKSVYLYEGSYSNIKITTPEDLILGEQILEKLT
HCCCCCCCHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKNSVIIVAAGKGKRMNSSISKQFLQIKNKPILYYTLSKFSTHESIDEIVLVTLEDKIE
CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEECHHHH
VCGDIIDKYNINKVSKIVPGGKERQDSVYNGLKAVSKDCEVVLIHDAARPFVTSDIIENG
HHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCC
IRYTNQYGAAACGVIPKDTIKIKNEKGFAIDTPNREDLFIVQTPQCFNYNIILSCHEKLK
HHCCCCCCCEECCCCCCCEEEEECCCCCEEECCCCCCEEEEECCCCCCEEEEEEHHHHHH
KHNKKVTDDTMVLENYGKSVYLYEGSYSNIKITTPEDLILGEQILEKLT
HCCCCCCCHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA