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The map label for this gene is yacL [H]

Identifier: 226950959

GI number: 226950959

Start: 4001694

End: 4002794

Strand: Reverse

Name: yacL [H]

Synonym: CLM_3976

Alternate gene names: 226950959

Gene position: 4002794-4001694 (Counterclockwise)

Preceding gene: 226950961

Following gene: 226950958

Centisome position: 96.33

GC content: 30.15

Gene sequence:

>1101_bases
ATGTTAAATAAAATATTAAGATGGCTTTTTACAATAATAGGATTAGCGTTAGGGTATATAATTGGAGGATTAATTATGTC
AACCACTTATTTCTCTAATTTATCTTATTTTAATGGAAGTCAAGTTAAGTCAGCTTTCTTTTTAATTTTATGTTCTATAG
TTTTTGGAATAATATTATTTCTTATATCCCCATGGATAAATTCTATAATATTGAAAATAATGGATTATATAGTAAGAAGT
TTGCAAAAATTATCTGCCAATGAAATTGTATTCGGAACTGTTGGAGCTATATTGGGATTGGCTATATCAGCTTTATTCGT
TAATCTGTTAGCTCAGATACCTATAGTAGGAGTAATATTAGCCGTAGTTGTTGCTATTATTATGGCTGCATTAGGAGCAA
ATATAGCAATCAAAAGAAAAGAAGAATTAATATCACTTTTTTCTAATATAAAAAGAAGTTCAGGAACAAAGGAAAAAAAG
ACAAAGTCTAGTAAAAATAATGCAACCCCTAAAGTATTAGATACATCTGTTATAATAGATGGAAGAATATTTGATATATG
TCAGACTGAATTTATAGAAGGAACTTTGGTAATACCTACTTTTGTTCTAGCGGAGCTTAGGCATATTGCAGATTCCTCAG
ATGGCTTAAAGAGAAATAGAGGGAGAAGAGGTTTAGATATACTAAATAAAATACAAAAAGAGCTAAATATAGATGTACAA
ATATATGAAAAGGACTTTCCTGAAATAGCAGAGGTAGATAGTAAATTATTAAAATTGGCTCAGGTTTTAAACGGTAAAGT
AATAACTAATGATTATAACTTAAATAAAGTAGCTGAATTTCAAGGGGTACCTGTATTGAATATAAATGAATTAGCAAATG
CAGTAAAACCTGTTGTGTTGCCGGGAGAGGAAATGAATATCCAAATTGTTAAAGATGGTAAGGAGGCTAATCAAGGAATA
GCTTACTTTGATGATGGAACTATGATTGTAGTAGAAGGTGCTAAAAAGCGTATAGGGCAAAATTTAGACGTAGTAGTAAC
CTCTGTTTTACAAACAGCGGCAGGAAGAATGATTTTTGCTAAGAGAAAAGAGGAGTCTTAG

Upstream 100 bases:

>100_bases
TCATGATTGTTGAAAATTGATAATTATTAATATATATTAAATATAAAAAGGATTGAAAATCTTAATAATTGTTAACAATT
ATTAAGAGGAGGTGAAATGG

Downstream 100 bases:

>100_bases
CATGAGTAAAAATTCTGTTATTATAGTTGCTGCCGGAAAAGGTAAAAGAATGAATAGCAGTATAAGTAAGCAGTTTTTGC
AGATAAAAAACAAACCTATT

Product: PIN/TRAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MLNKILRWLFTIIGLALGYIIGGLIMSTTYFSNLSYFNGSQVKSAFFLILCSIVFGIILFLISPWINSIILKIMDYIVRS
LQKLSANEIVFGTVGAILGLAISALFVNLLAQIPIVGVILAVVVAIIMAALGANIAIKRKEELISLFSNIKRSSGTKEKK
TKSSKNNATPKVLDTSVIIDGRIFDICQTEFIEGTLVIPTFVLAELRHIADSSDGLKRNRGRRGLDILNKIQKELNIDVQ
IYEKDFPEIAEVDSKLLKLAQVLNGKVITNDYNLNKVAEFQGVPVLNINELANAVKPVVLPGEEMNIQIVKDGKEANQGI
AYFDDGTMIVVEGAKKRIGQNLDVVVTSVLQTAAGRMIFAKRKEES

Sequences:

>Translated_366_residues
MLNKILRWLFTIIGLALGYIIGGLIMSTTYFSNLSYFNGSQVKSAFFLILCSIVFGIILFLISPWINSIILKIMDYIVRS
LQKLSANEIVFGTVGAILGLAISALFVNLLAQIPIVGVILAVVVAIIMAALGANIAIKRKEELISLFSNIKRSSGTKEKK
TKSSKNNATPKVLDTSVIIDGRIFDICQTEFIEGTLVIPTFVLAELRHIADSSDGLKRNRGRRGLDILNKIQKELNIDVQ
IYEKDFPEIAEVDSKLLKLAQVLNGKVITNDYNLNKVAEFQGVPVLNINELANAVKPVVLPGEEMNIQIVKDGKEANQGI
AYFDDGTMIVVEGAKKRIGQNLDVVVTSVLQTAAGRMIFAKRKEES
>Mature_366_residues
MLNKILRWLFTIIGLALGYIIGGLIMSTTYFSNLSYFNGSQVKSAFFLILCSIVFGIILFLISPWINSIILKIMDYIVRS
LQKLSANEIVFGTVGAILGLAISALFVNLLAQIPIVGVILAVVVAIIMAALGANIAIKRKEELISLFSNIKRSSGTKEKK
TKSSKNNATPKVLDTSVIIDGRIFDICQTEFIEGTLVIPTFVLAELRHIADSSDGLKRNRGRRGLDILNKIQKELNIDVQ
IYEKDFPEIAEVDSKLLKLAQVLNGKVITNDYNLNKVAEFQGVPVLNINELANAVKPVVLPGEEMNIQIVKDGKEANQGI
AYFDDGTMIVVEGAKKRIGQNLDVVVTSVLQTAAGRMIFAKRKEES

Specific function: Unknown

COG id: COG4956

COG function: function code R; Integral membrane protein (PIN domain superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596
- InterPro:   IPR002792 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 40200; Mature: 40200

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50926 TRAM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKILRWLFTIIGLALGYIIGGLIMSTTYFSNLSYFNGSQVKSAFFLILCSIVFGIILF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LISPWINSIILKIMDYIVRSLQKLSANEIVFGTVGAILGLAISALFVNLLAQIPIVGVIL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVVVAIIMAALGANIAIKRKEELISLFSNIKRSSGTKEKKTKSSKNNATPKVLDTSVIID
HHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEEEEEEC
GRIFDICQTEFIEGTLVIPTFVLAELRHIADSSDGLKRNRGRRGLDILNKIQKELNIDVQ
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHCCCEE
IYEKDFPEIAEVDSKLLKLAQVLNGKVITNDYNLNKVAEFQGVPVLNINELANAVKPVVL
EECCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHCCCCCEEHHHHHHHHCCEEE
PGEEMNIQIVKDGKEANQGIAYFDDGTMIVVEGAKKRIGQNLDVVVTSVLQTAAGRMIFA
CCCCCEEEEEECCCCCCCCEEEECCCCEEEEECHHHHHCCCHHHHHHHHHHHHHCCEEEH
KRKEES
HCCCCC
>Mature Secondary Structure
MLNKILRWLFTIIGLALGYIIGGLIMSTTYFSNLSYFNGSQVKSAFFLILCSIVFGIILF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LISPWINSIILKIMDYIVRSLQKLSANEIVFGTVGAILGLAISALFVNLLAQIPIVGVIL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVVVAIIMAALGANIAIKRKEELISLFSNIKRSSGTKEKKTKSSKNNATPKVLDTSVIID
HHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEEEEEEC
GRIFDICQTEFIEGTLVIPTFVLAELRHIADSSDGLKRNRGRRGLDILNKIQKELNIDVQ
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHCCCEE
IYEKDFPEIAEVDSKLLKLAQVLNGKVITNDYNLNKVAEFQGVPVLNINELANAVKPVVL
EECCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHCCCCCEEHHHHHHHHCCEEE
PGEEMNIQIVKDGKEANQGIAYFDDGTMIVVEGAKKRIGQNLDVVVTSVLQTAAGRMIFA
CCCCCEEEEEECCCCCCCCEEEECCCCEEEEECHHHHHCCCHHHHHHHHHHHHHCCEEEH
KRKEES
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 7510287 [H]