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The map label for this gene is mrnC [H]

Identifier: 226950954

GI number: 226950954

Start: 3996051

End: 3996491

Strand: Reverse

Name: mrnC [H]

Synonym: CLM_3971

Alternate gene names: 226950954

Gene position: 3996491-3996051 (Counterclockwise)

Preceding gene: 226950955

Following gene: 226950953

Centisome position: 96.18

GC content: 28.12

Gene sequence:

>441_bases
ATGGATTTTAGTTTATTTCAAAATAAGTTTACTATTAAGGATGGGAAAACATTAAATCCTCTAGTACTTGCATTCATAGG
AGATGCAGTATATGAGGTTTTTATAAGAACATTTCTTGTAGATAATAATAGAGAGTTAAATGTGCATAAACTACATGTGA
ATGCTATAAAATATGTAAAGGCTCATGGACAGAGTGATTGTATAAAAGATATAATGGCAGATTTAAATGAAGATGAGCTT
TATATATTTAAAAGGGGAAGAAATGCTAAATCAGGAACGGTGCCTAAAAATGCTGATGTTCAAGAATATAGATTTGCAAC
GGGTTTTGAAGCCCTTATAGGTTTTTTATATATAACAGATCAACAGGAAAGATTAAATTATTTATTAAATAATATAGTTA
CTTTAAATGGGAAAAAAGGAGCACTTGATAATGAAAGTTAA

Upstream 100 bases:

>100_bases
AGGCATTGTTTTGGAAGATACACCACAGGGAGTAAGATGGAAGCAAATATAAGATATAAGTACTAGTGGATTAATAAAAA
TAGAATGAGTGGAGAGTAAT

Downstream 100 bases:

>100_bases
ATTATTAGAATATACACCAAATGCAGAAAAATTAATAGCTTCCGCAGCAAAATTATGTTATAGTTCATCTGGAATTGAAG
ATTTACAAAATAATTTAGAC

Product: RNase3 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MDFSLFQNKFTIKDGKTLNPLVLAFIGDAVYEVFIRTFLVDNNRELNVHKLHVNAIKYVKAHGQSDCIKDIMADLNEDEL
YIFKRGRNAKSGTVPKNADVQEYRFATGFEALIGFLYITDQQERLNYLLNNIVTLNGKKGALDNES

Sequences:

>Translated_146_residues
MDFSLFQNKFTIKDGKTLNPLVLAFIGDAVYEVFIRTFLVDNNRELNVHKLHVNAIKYVKAHGQSDCIKDIMADLNEDEL
YIFKRGRNAKSGTVPKNADVQEYRFATGFEALIGFLYITDQQERLNYLLNNIVTLNGKKGALDNES
>Mature_146_residues
MDFSLFQNKFTIKDGKTLNPLVLAFIGDAVYEVFIRTFLVDNNRELNVHKLHVNAIKYVKAHGQSDCIKDIMADLNEDEL
YIFKRGRNAKSGTVPKNADVQEYRFATGFEALIGFLYITDQQERLNYLLNNIVTLNGKKGALDNES

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 16666; Mature: 16666

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFSLFQNKFTIKDGKTLNPLVLAFIGDAVYEVFIRTFLVDNNRELNVHKLHVNAIKYVK
CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHH
AHGQSDCIKDIMADLNEDELYIFKRGRNAKSGTVPKNADVQEYRFATGFEALIGFLYITD
HCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
QQERLNYLLNNIVTLNGKKGALDNES
HHHHHHHHHHHEEEECCCCCCCCCCC
>Mature Secondary Structure
MDFSLFQNKFTIKDGKTLNPLVLAFIGDAVYEVFIRTFLVDNNRELNVHKLHVNAIKYVK
CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHH
AHGQSDCIKDIMADLNEDELYIFKRGRNAKSGTVPKNADVQEYRFATGFEALIGFLYITD
HCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
QQERLNYLLNNIVTLNGKKGALDNES
HHHHHHHHHHHEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]