Click here to switch to the map view.

The map label for this gene is 226950888

Identifier: 226950888

GI number: 226950888

Start: 3944111

End: 3945364

Strand: Reverse

Name: 226950888

Synonym: CLM_3903

Alternate gene names: NA

Gene position: 3945364-3944111 (Counterclockwise)

Preceding gene: 226950889

Following gene: 226950887

Centisome position: 94.95

GC content: 20.49

Gene sequence:

>1254_bases
ATGAATAATGAAGCTAAATCTAGAAAAATATATACTAAGGCTTTAGACAATTTTAATAATGGAAATATAGATAAAGCTCT
AGATTTGTGTGAAAAAAGCATATCAATGGATTTAAAGAATAATTCCGCCATAAATTTAAAGGGATTATTGTATTATTTAA
AAGGTGATTTAATAAGTTGTAAAAATTTATGGAAAATGAATTATCATACAAATAAAGATACGGTATCTTATAAATATTTA
CAAGATGCCAAACTAGACGAACAATTTTTAAAAAAATATGCAAATGCTATTACATTAATCAAAAATAACGATATAGAAGG
AGCTATAGATTTATTAAAGCAATGTGAAAAAACAGATTTTAATCGTATAAATGTATGTAATAATTTAGCTATGTGCTATA
TTAAATTAGGTAAATATAATAATGCTTTAGAATATTATGAAAAAGCTTTATCTATAGATAAGAATAATGATATATCTATA
AATATAAAAAAGGAATTATATAAAAAGGGTTTAATAAAGAAACACAAAGGTAAAAAAATATTAATAGCAATATTAGTTAT
TAGCATTATATCTTCAATTTCTATATATTTATTTAATAAATTTAATAAAACGAAAAATATTAGTGAAATAAAAAACAATA
AAATAGCATCAAAAGAAAATAAAAATAAGTCCAATATACCTAAAAAAGAAGAAGCAAAAAAAACAGAGACAAAAAAACAA
GAAATAAAAAAGGAAGAAAAAATAGATATACGAAATTTAAATAATTATATAGAAAAGAAAAATTACATTCAACTATACAA
TATATATTCAAATTATAAAAATAAAAATTTAGATGTTAATAGTAAAAGTGTATTAGTAAAAGCAGAAAAGCTGTTAAAAG
AAGAAGGTGTAGAATATTTTTATAATACTGCTATGGTAAATACTAATAATAAAAAGTATAAAGAGAGTAATGATCTTCTC
TTAAAAGCATATAGTTTGGGTAATGTGAATTATTTATACCCACATATAATATATTTATTAGCTACAAATTATGAAGCATT
AAATAATATAAGCGAAGCTATAAGATATTATGAAATATATGCTAGTAGTTTTATGAAAAATGATTATGGAGACTTAGCAT
TATACAAACTTGCAACATTAAATGAAAAAGTAGATGATGCTAAATCTAAGAATTATGCTAAAAAATTATCACAAATATAT
CCTCAGTCTATGTATAATAACTCCAATATAAAGAGAATTATAAATAACAATTAA

Upstream 100 bases:

>100_bases
TGACAATTTTATTAAATCACATAAAGAAAAAATCACTATTTCTAATGATAAAGTAAAAGAATTTATTAAATAAGAACTAT
AGCTAAGAGAGGAAATTCAG

Downstream 100 bases:

>100_bases
TATTTTAGAATATTTTATTTATAATGTAAAACAATAATATTAGTTCTAATTTTGTTTTACAGGAGAGAATAAAGATGATA
ACAATTATAAAAAATGGATA

Product: tetratricopeptide repeat-containing protein

Products: NA

Alternate protein names: TPR-Repeat-Containing Protein; Tetratricopeptide Repeat Protein; Tetratricopeptide TPR_1 Repeat-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Repeat Domain Protein

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MNNEAKSRKIYTKALDNFNNGNIDKALDLCEKSISMDLKNNSAINLKGLLYYLKGDLISCKNLWKMNYHTNKDTVSYKYL
QDAKLDEQFLKKYANAITLIKNNDIEGAIDLLKQCEKTDFNRINVCNNLAMCYIKLGKYNNALEYYEKALSIDKNNDISI
NIKKELYKKGLIKKHKGKKILIAILVISIISSISIYLFNKFNKTKNISEIKNNKIASKENKNKSNIPKKEEAKKTETKKQ
EIKKEEKIDIRNLNNYIEKKNYIQLYNIYSNYKNKNLDVNSKSVLVKAEKLLKEEGVEYFYNTAMVNTNNKKYKESNDLL
LKAYSLGNVNYLYPHIIYLLATNYEALNNISEAIRYYEIYASSFMKNDYGDLALYKLATLNEKVDDAKSKNYAKKLSQIY
PQSMYNNSNIKRIINNN

Sequences:

>Translated_417_residues
MNNEAKSRKIYTKALDNFNNGNIDKALDLCEKSISMDLKNNSAINLKGLLYYLKGDLISCKNLWKMNYHTNKDTVSYKYL
QDAKLDEQFLKKYANAITLIKNNDIEGAIDLLKQCEKTDFNRINVCNNLAMCYIKLGKYNNALEYYEKALSIDKNNDISI
NIKKELYKKGLIKKHKGKKILIAILVISIISSISIYLFNKFNKTKNISEIKNNKIASKENKNKSNIPKKEEAKKTETKKQ
EIKKEEKIDIRNLNNYIEKKNYIQLYNIYSNYKNKNLDVNSKSVLVKAEKLLKEEGVEYFYNTAMVNTNNKKYKESNDLL
LKAYSLGNVNYLYPHIIYLLATNYEALNNISEAIRYYEIYASSFMKNDYGDLALYKLATLNEKVDDAKSKNYAKKLSQIY
PQSMYNNSNIKRIINNN
>Mature_417_residues
MNNEAKSRKIYTKALDNFNNGNIDKALDLCEKSISMDLKNNSAINLKGLLYYLKGDLISCKNLWKMNYHTNKDTVSYKYL
QDAKLDEQFLKKYANAITLIKNNDIEGAIDLLKQCEKTDFNRINVCNNLAMCYIKLGKYNNALEYYEKALSIDKNNDISI
NIKKELYKKGLIKKHKGKKILIAILVISIISSISIYLFNKFNKTKNISEIKNNKIASKENKNKSNIPKKEEAKKTETKKQ
EIKKEEKIDIRNLNNYIEKKNYIQLYNIYSNYKNKNLDVNSKSVLVKAEKLLKEEGVEYFYNTAMVNTNNKKYKESNDLL
LKAYSLGNVNYLYPHIIYLLATNYEALNNISEAIRYYEIYASSFMKNDYGDLALYKLATLNEKVDDAKSKNYAKKLSQIY
PQSMYNNSNIKRIINNN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48567; Mature: 48567

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNEAKSRKIYTKALDNFNNGNIDKALDLCEKSISMDLKNNSAINLKGLLYYLKGDLISC
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEHHHEEEEHHCCHHHH
KNLWKMNYHTNKDTVSYKYLQDAKLDEQFLKKYANAITLIKNNDIEGAIDLLKQCEKTDF
HHHEEECCCCCCCCEEEHHHHHCCHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHCCC
NRINVCNNLAMCYIKLGKYNNALEYYEKALSIDKNNDISINIKKELYKKGLIKKHKGKKI
CHHHHHHHHEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCHHHCCCCCH
LIAILVISIISSISIYLFNKFNKTKNISEIKNNKIASKENKNKSNIPKKEEAKKTETKKQ
HHHHHHHHHHHHHHEEHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
EIKKEEKIDIRNLNNYIEKKNYIQLYNIYSNYKNKNLDVNSKSVLVKAEKLLKEEGVEYF
HHHHHHCCCHHHHHHHHHCCCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHH
YNTAMVNTNNKKYKESNDLLLKAYSLGNVNYLYPHIIYLLATNYEALNNISEAIRYYEIY
HHEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ASSFMKNDYGDLALYKLATLNEKVDDAKSKNYAKKLSQIYPQSMYNNSNIKRIINNN
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHCCCC
>Mature Secondary Structure
MNNEAKSRKIYTKALDNFNNGNIDKALDLCEKSISMDLKNNSAINLKGLLYYLKGDLISC
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEHHHEEEEHHCCHHHH
KNLWKMNYHTNKDTVSYKYLQDAKLDEQFLKKYANAITLIKNNDIEGAIDLLKQCEKTDF
HHHEEECCCCCCCCEEEHHHHHCCHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHCCC
NRINVCNNLAMCYIKLGKYNNALEYYEKALSIDKNNDISINIKKELYKKGLIKKHKGKKI
CHHHHHHHHEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCHHHCCCCCH
LIAILVISIISSISIYLFNKFNKTKNISEIKNNKIASKENKNKSNIPKKEEAKKTETKKQ
HHHHHHHHHHHHHHEEHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
EIKKEEKIDIRNLNNYIEKKNYIQLYNIYSNYKNKNLDVNSKSVLVKAEKLLKEEGVEYF
HHHHHHCCCHHHHHHHHHCCCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHH
YNTAMVNTNNKKYKESNDLLLKAYSLGNVNYLYPHIIYLLATNYEALNNISEAIRYYEIY
HHEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ASSFMKNDYGDLALYKLATLNEKVDDAKSKNYAKKLSQIYPQSMYNNSNIKRIINNN
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA